Rmu_co8469863.1_g000001
NAC Family

inactive purple acid phosphatase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8469863.1
OG0015175
Physical Location & Seq
Forward (+)
334 .. 1993
1660 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8469863.1_g000001.1.cds

Sequence Viewer

Length: 822 bp
atgagtcgcatctgtcagtctcagcttgtcaaaagcttcagcagcagcagcagaagctacctgatcaaaagcccaatggactcgtcgtcctcagctgcaaactggaaccactctttcctctatctcatcttcatctacgctcttctctacttcctccacacccaaatcgctcacagattactcataggccatgcacccgtaaccatcaagaagaccagcccaaatctccctcttcgcttccgctccgatgggaccttcaagattctccaggtggctgatatgcattatgggaatggagggttgactcggtgtcgagacgtattggactccgagtttgcggcctgttctgatcggaacacgtcgctattcctcaagaggatgattgaggctgaaaagcctgatttcattgcttttacaggtgataatatatttgggccaagctctaccgacgctgctgaatcaatgattcgagcatttggtcctgccattaaatcaggcattccgtgggcagcagttttgggaaaccacgaccaagaatctacaatgaatcgtgaagaactcatgtcctttatctcccttatggactattcactttcacaagttaatccattagctgaagatcccttaggagaatggatgcaagacattgatggttttggcaattataatctgagagtatatggtgccccaggttcctacttggcaaatagcagcatcctcaaccttttctttcttgacagtggagacagagagactgttcatggagtacgaacttacggttggattaaggaatcacaactccgttggcttcgtggtgtttct
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0003993 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0042578 GO:0044237
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Metallophos

Protein Analysis

274

Amino Acids

30.69

Weight (kDa)

6.38

Isoelectric Point (pI)

50.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015175)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G57140
fragaria_vesca FvH4_4g07080
malus_domestica MD04G1168800.v1.1
prunus_persica Prupe.1G074200_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0399201
rosa_laevigata RLG00000009290
rosa_multiflora Rmu_co8469863.1_g000001 Rmu_sc0002582.1_g000004 Rmu_sc0024868.1_g000004
rosa_roxburghii Rroxscaffold_5G00344160
rosa_rugosa Rorug04G0015100
rosa_samantha Rh4AG093000 Rh4BG090800 Rh4CG101400 Rh4DG085300
rosa_wichuraiana Rw4G007660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 666
AccB1I GGYRCC 1 cut(s) 683
AccBSI CCGCTC 1 cut(s) 243
AciI CCGC 2 cut(s) 241, 338
AclWI GGATC 1 cut(s) 614
AcuI CTGAAG 2 cut(s) 22, 636
AfaI GTAC 1 cut(s) 768
AflIII ACRYGT 1 cut(s) 357
AgsI TTSAA 1 cut(s) 259
AhdI GACNNNNNGTC 2 cut(s) 85, 309
AjiI CACGTC 1 cut(s) 360
AjnI CCWGG 2 cut(s) 267, 688
AjuI GAANNNNNNNTTGG 2 cut(s) 763, 795
AluBI AGCT 6 cut(s) 25, 36, 57, 95, 441, 614
AluI AGCT 6 cut(s) 25, 36, 57, 95, 441, 614
Alw26I GTCTC 4 cut(s) 24, 309, 738, 746
AlwI GGATC 1 cut(s) 614
AoxI GGCC 3 cut(s) 187, 339, 434
ApeKI GCWGC 7 cut(s) 42, 45, 48, 95, 452, 509, 711
ArsI GACNNNNNNTTYG 2 cut(s) 317, 349
AspS9I GGNCC 3 cut(s) 252, 434, 479
AsuHPI GGTGA 1 cut(s) 431
AvaII GGWCC 2 cut(s) 252, 479
AxyI CCTNAGG 1 cut(s) 625
BaeGI GKGCMC 1 cut(s) 688
BanI GGYRCC 1 cut(s) 683
BbsI GAAGAC 1 cut(s) 218
BbvCI CCTCAGC 1 cut(s) 91
BbvI GCAGC 7 cut(s) 54, 57, 60, 82, 439, 521, 723
BccI CCATC 3 cut(s) 212, 242, 644
BciT130I CCWGG 2 cut(s) 269, 690
BclI TGATCA 1 cut(s) 63
BcoDI GTCTC 4 cut(s) 24, 309, 738, 746
BisI GCNGC 8 cut(s) 43, 46, 49, 96, 339, 453, 510, 712
BlsI GCNGC 8 cut(s) 44, 47, 50, 97, 340, 454, 511, 713
Bme1390I CCNGG 2 cut(s) 269, 690
Bme18I GGWCC 2 cut(s) 252, 479
BmeRI GACNNNNNGTC 2 cut(s) 85, 309
BmgBI CACGTC 1 cut(s) 360
BmgT120I GGNCC 3 cut(s) 252, 434, 479
BmiI GGNNCC 4 cut(s) 107, 253, 685, 694
BmrFI CCNGG 2 cut(s) 269, 690
BmsI GCATC 3 cut(s) 18, 627, 723
BpiI GAAGAC 1 cut(s) 218
BpmI CTGGAG 1 cut(s) 251
Bpu10I CCTNAGC 1 cut(s) 91
BpuEI CTTGAG 1 cut(s) 356
BsaJI CCNNGG 2 cut(s) 503, 688
Bse1I ACTGG 1 cut(s) 107
Bse21I CCTNAGG 1 cut(s) 625
Bse3DI GCAATG 1 cut(s) 405
BseBI CCWGG 2 cut(s) 269, 690
BseDI CCNNGG 2 cut(s) 503, 688
BseGI GGATG 3 cut(s) 384, 642, 714
BseMI GCAATG 1 cut(s) 405
BseMII CTCAG 3 cut(s) 35, 105, 662
BseNI ACTGG 1 cut(s) 107
BseSI GKGCMC 1 cut(s) 688
BseXI GCAGC 7 cut(s) 54, 57, 60, 82, 439, 521, 723
BshFI GGCC 3 cut(s) 189, 341, 436
BshNI GGYRCC 1 cut(s) 683
BslFI GGGAC 1 cut(s) 265
BsmAI GTCTC 4 cut(s) 24, 309, 738, 746
BsmBI CGTCTC 1 cut(s) 309
BsmFI GGGAC 1 cut(s) 265
BsmI GAATGC 1 cut(s) 498
BsnI GGCC 3 cut(s) 189, 341, 436
Bsp1286I GDGCHC 1 cut(s) 688
Bsp143I GATC 3 cut(s) 63, 349, 619
BspACI CCGC 2 cut(s) 241, 338
BspANI GGCC 3 cut(s) 189, 341, 436
BspCNI CTCAG 3 cut(s) 34, 104, 663
BspLI GGNNCC 4 cut(s) 107, 253, 685, 694
BspPI GGATC 1 cut(s) 614
BspQI GCTCTTC 1 cut(s) 147
BspT107I GGYRCC 1 cut(s) 683
BsrBI CCGCTC 1 cut(s) 243
BsrDI GCAATG 1 cut(s) 405
BsrI ACTGG 1 cut(s) 107
BssECI CCNNGG 2 cut(s) 503, 688
BssMI GATC 3 cut(s) 63, 349, 619
Bst2UI CCWGG 2 cut(s) 269, 690
Bst4CI ACNGT 3 cut(s) 740, 757, 779
Bst6I CTCTTC 2 cut(s) 147, 237
BstDEI CTNAG 4 cut(s) 21, 91, 625, 671
BstDSI CCRYGG 1 cut(s) 503
BstF5I GGATG 3 cut(s) 384, 642, 714
BstKTI GATC 3 cut(s) 66, 352, 622
BstMAI GTCTC 4 cut(s) 24, 309, 738, 746
BstMBI GATC 3 cut(s) 63, 349, 619
BstMWI GCNNNNNNNGC 3 cut(s) 42, 48, 54
BstNI CCWGG 2 cut(s) 269, 690
BstSCI CCNGG 2 cut(s) 267, 688
BstSLI GKGCMC 1 cut(s) 688
BstV1I GCAGC 7 cut(s) 54, 57, 60, 82, 439, 521, 723
BstV2I GAAGAC 1 cut(s) 218
BstX2I RGATCY 1 cut(s) 619
BstYI RGATCY 1 cut(s) 619
Bsu36I CCTNAGG 1 cut(s) 625
BsuRI GGCC 3 cut(s) 189, 341, 436
BtgI CCRYGG 1 cut(s) 503
BtrI CACGTC 1 cut(s) 360
BtsCI GGATG 3 cut(s) 384, 642, 714
BtsIMutI CAGTG 1 cut(s) 745
Cfr13I GGNCC 3 cut(s) 252, 434, 479
CseI GACGC 1 cut(s) 458
Csp6I GTAC 1 cut(s) 767
CviAII CATG 3 cut(s) 191, 562, 761
CviQI GTAC 1 cut(s) 767
DdeI CTNAG 4 cut(s) 21, 91, 625, 671
DpnI GATC 3 cut(s) 65, 351, 621
DpnII GATC 3 cut(s) 63, 349, 619
DriI GACNNNNNGTC 2 cut(s) 85, 309
Eam1104I CTCTTC 2 cut(s) 147, 237
Eam1105I GACNNNNNGTC 2 cut(s) 85, 309
EarI CTCTTC 2 cut(s) 147, 237
Eco47I GGWCC 2 cut(s) 252, 479
Eco57I CTGAAG 2 cut(s) 22, 636
Eco81I CCTNAGG 1 cut(s) 625
EcoO109I RGGNCCY 1 cut(s) 252
EcoRII CCWGG 2 cut(s) 267, 688
EcoT22I ATGCAT 1 cut(s) 285
Esp3I CGTCTC 1 cut(s) 309
FaeI CATG 3 cut(s) 194, 565, 764
FaqI GGGAC 1 cut(s) 265
FatI CATG 3 cut(s) 190, 561, 760
FbaI TGATCA 1 cut(s) 63
Fnu4HI GCNGC 8 cut(s) 43, 46, 49, 96, 339, 453, 510, 712
FokI GGATG 3 cut(s) 391, 649, 701
Fsp4HI GCNGC 8 cut(s) 43, 46, 49, 96, 339, 453, 510, 712
GluI GCNGC 8 cut(s) 43, 46, 49, 96, 339, 453, 510, 712
GsuI CTGGAG 1 cut(s) 251
HaeIII GGCC 3 cut(s) 189, 341, 436
HgaI GACGC 1 cut(s) 458
Hin1II CATG 3 cut(s) 194, 565, 764
HincII GTYRAC 1 cut(s) 303
HindII GTYRAC 1 cut(s) 303
HindIII AAGCTT 1 cut(s) 34
HphI GGTGA 1 cut(s) 431
Hpy166II GTNNAC 1 cut(s) 303
Hpy188I TCNGA 5 cut(s) 247, 331, 349, 354, 672
Hpy188III TCNNGA 6 cut(s) 208, 259, 314, 373, 551, 734
Hpy8I GTNNAC 1 cut(s) 303
Hpy99I CGWCG 3 cut(s) 88, 364, 452
HpyAV CCTTC 1 cut(s) 265
HpyCH4III ACNGT 3 cut(s) 740, 757, 779
HpyCH4IV ACGT 2 cut(s) 318, 359
HpyCH4V TGCA 4 cut(s) 98, 194, 283, 640
HpyF10VI GCNNNNNNNGC 3 cut(s) 42, 48, 54
HpyF3I CTNAG 4 cut(s) 21, 91, 625, 671
HpySE526I ACGT 2 cut(s) 318, 359
Hsp92II CATG 3 cut(s) 194, 565, 764
Ksp22I TGATCA 1 cut(s) 63
Kzo9I GATC 3 cut(s) 63, 349, 619
LguI GCTCTTC 1 cut(s) 147
LmnI GCTCC 1 cut(s) 248
Lsp1109I GCAGC 7 cut(s) 54, 57, 60, 82, 439, 521, 723
LweI GCATC 3 cut(s) 18, 627, 723
MaeII ACGT 2 cut(s) 318, 359
MaeIII GTNAC 1 cut(s) 199
MalI GATC 3 cut(s) 65, 351, 621
MbiI CCGCTC 1 cut(s) 243
MboI GATC 3 cut(s) 63, 349, 619
MboII GAAGA 6 cut(s) 121, 134, 223, 224, 566, 629
MflI RGATCY 1 cut(s) 619
MhlI GDGCHC 1 cut(s) 688
MluCI AATT 1 cut(s) 661
MlyI GAGTC 4 cut(s) 13, 74, 298, 320
MmeI TCCRAC 1 cut(s) 761
MnlI CCTC 9 cut(s) 100, 128, 164, 240, 290, 369, 379, 380, 728
Mph1103I ATGCAT 1 cut(s) 285
MseI TTAA 3 cut(s) 489, 603, 786
MspA1I CMGCKG 1 cut(s) 95
MspR9I CCNGG 2 cut(s) 269, 690
Mva1269I GAATGC 1 cut(s) 498
MvaI CCWGG 2 cut(s) 269, 690
MwoI GCNNNNNNNGC 3 cut(s) 42, 48, 54
NdeII GATC 3 cut(s) 63, 349, 619
NlaIII CATG 3 cut(s) 194, 565, 764
NlaIV GGNNCC 4 cut(s) 107, 253, 685, 694
NsiI ATGCAT 1 cut(s) 285
PciSI GCTCTTC 1 cut(s) 147
PctI GAATGC 1 cut(s) 498
PfeI GAWTC 6 cut(s) 262, 458, 466, 536, 547, 791
PkrI GCNGC 8 cut(s) 44, 47, 50, 97, 340, 454, 511, 713
PleI GAGTC 4 cut(s) 12, 74, 298, 320
PpsI GAGTC 4 cut(s) 12, 74, 298, 320
PpuMI RGGWCCY 1 cut(s) 252
PsiI TTATAA 1 cut(s) 666
Psp5II RGGWCCY 1 cut(s) 252
Psp6I CCWGG 2 cut(s) 267, 688
PspGI CCWGG 2 cut(s) 267, 688
PspN4I GGNNCC 4 cut(s) 107, 253, 685, 694
PspPI GGNCC 3 cut(s) 252, 434, 479
PspPPI RGGWCCY 1 cut(s) 252
PsuI RGATCY 1 cut(s) 619
PvuII CAGCTG 1 cut(s) 95
RsaI GTAC 1 cut(s) 768
RsaNI GTAC 1 cut(s) 767
SapI GCTCTTC 1 cut(s) 147
SaqAI TTAA 3 cut(s) 489, 603, 786
SatI GCNGC 8 cut(s) 43, 46, 49, 96, 339, 453, 510, 712
Sau3AI GATC 3 cut(s) 63, 349, 619
Sau96I GGNCC 3 cut(s) 252, 434, 479
SchI GAGTC 4 cut(s) 13, 74, 298, 320
ScrFI CCNGG 2 cut(s) 269, 690
SduI GDGCHC 1 cut(s) 688
SfaNI GCATC 3 cut(s) 18, 627, 723
SinI GGWCC 2 cut(s) 252, 479
SmlI CTYRAG 1 cut(s) 371
SmoI CTYRAG 1 cut(s) 371
Sse9I AATT 1 cut(s) 661
SsiI CCGC 2 cut(s) 241, 338
StyD4I CCNGG 2 cut(s) 267, 688
TaaI ACNGT 3 cut(s) 740, 757, 779
TaiI ACGT 2 cut(s) 321, 362
TaqI TCGA 2 cut(s) 313, 469
TasI AATT 1 cut(s) 661
TauI GCSGC 1 cut(s) 341
TfiI GAWTC 6 cut(s) 262, 458, 466, 536, 547, 791
Tru1I TTAA 3 cut(s) 489, 603, 786
Tru9I TTAA 3 cut(s) 489, 603, 786
TscAI CASTG 1 cut(s) 745
TseI GCWGC 7 cut(s) 42, 45, 48, 95, 452, 509, 711
TspDTI ATGAA 4 cut(s) 121, 394, 560, 749
TspGWI ACGGA 2 cut(s) 492, 791
TspRI CASTG 1 cut(s) 745
VpaK11BI GGWCC 2 cut(s) 252, 479
Zsp2I ATGCAT 1 cut(s) 285
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.