Rmu_sc0002582.1_g000004
NAC Family

inactive purple acid phosphatase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002582.1
OG0015175
Physical Location & Seq
Reverse (-)
38169 .. 39254
1086 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002582.1_g000004.1.cds

Sequence Viewer

Length: 825 bp
atgattcgagcatttggtcctgccattaaatcaggcattccgtgggcagcagttttgggaaaccacgaccaagaatctacaatgaatcgtgaagaactcatgtcctttatctcccttatggactattcactttcacaagttaatccattagctgaagatcccttaggagaatggatgcaagacattgatggttttggcaattataatctgagagtatatggtgccccaggttcctacttggcaaatagcagcatcctcaaccttttctttcttgacagtggagacagagagactgttcatggagtacgaacttacggttggattaaggaatcacaactccgttggcttcgtggtgtttctcagggccacagtcgagatccagatcactcagacaatgctttttctccagataaaccaccggcgcttgcttttttccatatcccaattcctgagatccggcagctgtggaataaagacattgttggcaagtttcaggaggctgtggcatgttcatcagtgaacccgggagttttgcagacccttgtatccatgggagatgtgaaagctgtgttcattggacatgatcataccaatgacttttgtgggaatcttgatggtgtttggttctgttatggtgggggctttggatatcatggttatggaaagacggggtggccaagaagagctagggtcatattggcagaactcaggaaaggggagaaaggctggatgggagttgagaggattaggacatggaagagtcttgatgatgagaaactgagcaagattgatgagcagttcttgtgggaataccatctatcatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0003993 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0042578 GO:0044237
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Metallophos

Protein Analysis

274

Amino Acids

30.92

Weight (kDa)

5.71

Isoelectric Point (pI)

35.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015175)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G57140
fragaria_vesca FvH4_4g07080
malus_domestica MD04G1168800.v1.1
prunus_persica Prupe.1G074200_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0399201
rosa_laevigata RLG00000009290
rosa_multiflora Rmu_co8469863.1_g000001 Rmu_sc0002582.1_g000004 Rmu_sc0024868.1_g000004
rosa_roxburghii Rroxscaffold_5G00344160
rosa_rugosa Rorug04G0015100
rosa_samantha Rh4AG093000 Rh4BG090800 Rh4CG101400 Rh4DG085300
rosa_wichuraiana Rw4G007660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 204
AccB1I GGYRCC 1 cut(s) 221
AclWI GGATC 3 cut(s) 152, 371, 448
AcoI YGGCCR 1 cut(s) 674
AcuI CTGAAG 1 cut(s) 174
AfaI GTAC 1 cut(s) 306
AjnI CCWGG 1 cut(s) 226
AjuI GAANNNNNNNTTGG 2 cut(s) 301, 333
AluBI AGCT 4 cut(s) 152, 463, 566, 686
AluI AGCT 4 cut(s) 152, 463, 566, 686
Alw26I GTCTC 2 cut(s) 276, 284
AlwI GGATC 3 cut(s) 152, 371, 448
Ama87I CYCGRG 1 cut(s) 523
AoxI GGCC 2 cut(s) 364, 674
ApeKI GCWGC 3 cut(s) 47, 249, 460
AspLEI GCGC 1 cut(s) 424
AspS9I GGNCC 2 cut(s) 17, 364
AsuC2I CCSGG 2 cut(s) 524, 525
AvaI CYCGRG 1 cut(s) 523
AvaII GGWCC 1 cut(s) 17
AxyI CCTNAGG 1 cut(s) 163
BaeGI GKGCMC 1 cut(s) 226
BaeI ACNNNNGTAYC 2 cut(s) 528, 561
BalI TGGCCA 1 cut(s) 676
BanI GGYRCC 1 cut(s) 221
BbvI GCAGC 3 cut(s) 59, 261, 472
BccI CCATC 4 cut(s) 182, 608, 724, 822
BciT130I CCWGG 1 cut(s) 228
BciVI GTATCC 1 cut(s) 556
BclI TGATCA 1 cut(s) 583
BcnI CCSGG 2 cut(s) 524, 525
BcoDI GTCTC 2 cut(s) 276, 284
BfaI CTAG 1 cut(s) 687
BfoI RGCGCY 1 cut(s) 425
BfuI GTATCC 1 cut(s) 556
BisI GCNGC 3 cut(s) 48, 250, 461
BlsI GCNGC 3 cut(s) 49, 251, 462
Bme1390I CCNGG 3 cut(s) 228, 524, 525
Bme18I GGWCC 1 cut(s) 17
BmeT110I CYCGRG 1 cut(s) 523
BmgT120I GGNCC 2 cut(s) 17, 364
BmiI GGNNCC 2 cut(s) 223, 232
BmrFI CCNGG 3 cut(s) 228, 524, 525
BmsI GCATC 2 cut(s) 165, 261
BpmI CTGGAG 1 cut(s) 390
BpuMI CCSGG 2 cut(s) 524, 525
BsaBI GATNNNNATC 1 cut(s) 381
BsaJI CCNNGG 4 cut(s) 41, 226, 523, 549
Bse118I RCCGGY 1 cut(s) 418
Bse21I CCTNAGG 1 cut(s) 163
Bse8I GATNNNNATC 1 cut(s) 381
BseBI CCWGG 1 cut(s) 228
BseDI CCNNGG 4 cut(s) 41, 226, 523, 549
BseGI GGATG 3 cut(s) 180, 252, 735
BseJI GATNNNNATC 1 cut(s) 381
BseMII CTCAG 6 cut(s) 200, 374, 402, 441, 721, 770
BseSI GKGCMC 1 cut(s) 226
BseXI GCAGC 3 cut(s) 59, 261, 472
BshFI GGCC 2 cut(s) 366, 676
BshNI GGYRCC 1 cut(s) 221
BsiHKCI CYCGRG 1 cut(s) 523
BsiSI CCGG 3 cut(s) 419, 457, 524
BsmAI GTCTC 2 cut(s) 276, 284
BsmI GAATGC 1 cut(s) 36
BsnI GGCC 2 cut(s) 366, 676
BsoBI CYCGRG 1 cut(s) 523
Bsp1286I GDGCHC 1 cut(s) 226
Bsp143I GATC 5 cut(s) 157, 376, 382, 453, 583
Bsp19I CCATGG 1 cut(s) 549
BspANI GGCC 2 cut(s) 366, 676
BspCNI CTCAG 6 cut(s) 201, 373, 401, 442, 720, 771
BspHI TCATGA 1 cut(s) 821
BspLI GGNNCC 2 cut(s) 223, 232
BspPI GGATC 3 cut(s) 152, 371, 448
BspQI GCTCTTC 1 cut(s) 676
BspT107I GGYRCC 1 cut(s) 221
BsrFI RCCGGY 1 cut(s) 418
BssAI RCCGGY 1 cut(s) 418
BssECI CCNNGG 4 cut(s) 41, 226, 523, 549
BssMI GATC 5 cut(s) 157, 376, 382, 453, 583
BssT1I CCWWGG 1 cut(s) 549
Bst2UI CCWGG 1 cut(s) 228
Bst4CI ACNGT 4 cut(s) 278, 295, 317, 371
Bst6I CTCTTC 2 cut(s) 676, 752
BstC8I GCNNGC 1 cut(s) 426
BstDEI CTNAG 7 cut(s) 163, 209, 360, 388, 450, 707, 779
BstDSI CCRYGG 2 cut(s) 41, 549
BstF5I GGATG 3 cut(s) 180, 252, 735
BstH2I RGCGCY 1 cut(s) 425
BstHHI GCGC 1 cut(s) 424
BstKTI GATC 5 cut(s) 160, 379, 385, 456, 586
BstMAI GTCTC 2 cut(s) 276, 284
BstMBI GATC 5 cut(s) 157, 376, 382, 453, 583
BstNI CCWGG 1 cut(s) 228
BstNSI RCATGY 1 cut(s) 510
BstSCI CCNGG 3 cut(s) 226, 522, 523
BstSLI GKGCMC 1 cut(s) 226
BstV1I GCAGC 3 cut(s) 59, 261, 472
BstX2I RGATCY 3 cut(s) 157, 376, 453
BstYI RGATCY 3 cut(s) 157, 376, 453
Bsu36I CCTNAGG 1 cut(s) 163
BsuI GTATCC 1 cut(s) 556
BsuRI GGCC 2 cut(s) 366, 676
BtgI CCRYGG 2 cut(s) 41, 549
BtsCI GGATG 3 cut(s) 180, 252, 735
BtsIMutI CAGTG 2 cut(s) 283, 522
Cac8I GCNNGC 1 cut(s) 426
CciI TCATGA 1 cut(s) 821
CfoI GCGC 1 cut(s) 424
Cfr10I RCCGGY 1 cut(s) 418
Cfr13I GGNCC 2 cut(s) 17, 364
Cfr9I CCCGGG 1 cut(s) 523
Csp6I GTAC 1 cut(s) 305
CviAII CATG 8 cut(s) 100, 299, 507, 550, 581, 653, 753, 822
CviQI GTAC 1 cut(s) 305
DdeI CTNAG 7 cut(s) 163, 209, 360, 388, 450, 707, 779
DpnI GATC 5 cut(s) 159, 378, 384, 455, 585
DpnII GATC 5 cut(s) 157, 376, 382, 453, 583
EaeI YGGCCR 1 cut(s) 674
Eam1104I CTCTTC 2 cut(s) 676, 752
EarI CTCTTC 2 cut(s) 676, 752
Eco130I CCWWGG 1 cut(s) 549
Eco32I GATATC 1 cut(s) 650
Eco47I GGWCC 1 cut(s) 17
Eco57I CTGAAG 1 cut(s) 174
Eco81I CCTNAGG 1 cut(s) 163
Eco88I CYCGRG 1 cut(s) 523
EcoRII CCWGG 1 cut(s) 226
EcoRV GATATC 1 cut(s) 650
EcoT14I CCWWGG 1 cut(s) 549
ErhI CCWWGG 1 cut(s) 549
FaeI CATG 8 cut(s) 103, 302, 510, 553, 584, 656, 756, 825
FatI CATG 8 cut(s) 99, 298, 506, 549, 580, 652, 752, 821
FbaI TGATCA 1 cut(s) 583
Fnu4HI GCNGC 3 cut(s) 48, 250, 461
FokI GGATG 3 cut(s) 187, 239, 742
Fsp4HI GCNGC 3 cut(s) 48, 250, 461
FspBI CTAG 1 cut(s) 687
GlaI GCGC 1 cut(s) 423
GluI GCNGC 3 cut(s) 48, 250, 461
GsuI CTGGAG 1 cut(s) 390
HaeII RGCGCY 1 cut(s) 425
HaeIII GGCC 2 cut(s) 366, 676
HapII CCGG 3 cut(s) 419, 457, 524
HhaI GCGC 1 cut(s) 424
Hin1II CATG 8 cut(s) 103, 302, 510, 553, 584, 656, 756, 825
Hin6I GCGC 1 cut(s) 422
HinP1I GCGC 1 cut(s) 422
HinfI GANTC 6 cut(s) 4, 74, 85, 329, 607, 760
HpaII CCGG 3 cut(s) 419, 457, 524
Hpy166II GTNNAC 1 cut(s) 520
Hpy188I TCNGA 2 cut(s) 210, 391
Hpy8I GTNNAC 1 cut(s) 520
HpyCH4III ACNGT 4 cut(s) 278, 295, 317, 371
HpyCH4V TGCA 2 cut(s) 178, 535
HpyF3I CTNAG 7 cut(s) 163, 209, 360, 388, 450, 707, 779
Hsp92II CATG 8 cut(s) 103, 302, 510, 553, 584, 656, 756, 825
HspAI GCGC 1 cut(s) 422
Ksp22I TGATCA 1 cut(s) 583
Kzo9I GATC 5 cut(s) 157, 376, 382, 453, 583
LguI GCTCTTC 1 cut(s) 676
Lsp1109I GCAGC 3 cut(s) 59, 261, 472
LweI GCATC 2 cut(s) 165, 261
MaeI CTAG 1 cut(s) 687
MalI GATC 5 cut(s) 159, 378, 384, 455, 585
MboI GATC 5 cut(s) 157, 376, 382, 453, 583
MboII GAAGA 4 cut(s) 104, 167, 693, 769
MflI RGATCY 3 cut(s) 157, 376, 453
MhlI GDGCHC 1 cut(s) 226
MlsI TGGCCA 1 cut(s) 676
MluCI AATT 2 cut(s) 199, 444
MluNI TGGCCA 1 cut(s) 676
MlyI GAGTC 1 cut(s) 769
MmeI TCCRAC 1 cut(s) 299
MnlI CCTC 3 cut(s) 266, 490, 735
Mox20I TGGCCA 1 cut(s) 676
MscI TGGCCA 1 cut(s) 676
MseI TTAA 3 cut(s) 27, 141, 324
MslI CAYNNNNRTG 2 cut(s) 591, 657
Msp20I TGGCCA 1 cut(s) 676
MspA1I CMGCKG 1 cut(s) 463
MspI CCGG 3 cut(s) 419, 457, 524
MspR9I CCNGG 3 cut(s) 228, 524, 525
Mva1269I GAATGC 1 cut(s) 36
MvaI CCWGG 1 cut(s) 228
NciI CCSGG 2 cut(s) 524, 525
NcoI CCATGG 1 cut(s) 549
NdeII GATC 5 cut(s) 157, 376, 382, 453, 583
NlaIII CATG 8 cut(s) 103, 302, 510, 553, 584, 656, 756, 825
NlaIV GGNNCC 2 cut(s) 223, 232
NspI RCATGY 1 cut(s) 510
PagI TCATGA 1 cut(s) 821
PciSI GCTCTTC 1 cut(s) 676
PctI GAATGC 1 cut(s) 36
PfeI GAWTC 5 cut(s) 4, 74, 85, 329, 607
PkrI GCNGC 3 cut(s) 49, 251, 462
PleI GAGTC 1 cut(s) 768
PpsI GAGTC 1 cut(s) 768
PsiI TTATAA 1 cut(s) 204
Psp6I CCWGG 1 cut(s) 226
PspGI CCWGG 1 cut(s) 226
PspN4I GGNNCC 2 cut(s) 223, 232
PspPI GGNCC 2 cut(s) 17, 364
PsuI RGATCY 3 cut(s) 157, 376, 453
PvuII CAGCTG 1 cut(s) 463
RsaI GTAC 1 cut(s) 306
RsaNI GTAC 1 cut(s) 305
RseI CAYNNNNRTG 2 cut(s) 591, 657
SapI GCTCTTC 1 cut(s) 676
SaqAI TTAA 3 cut(s) 27, 141, 324
SatI GCNGC 3 cut(s) 48, 250, 461
Sau3AI GATC 5 cut(s) 157, 376, 382, 453, 583
Sau96I GGNCC 2 cut(s) 17, 364
SchI GAGTC 1 cut(s) 769
ScrFI CCNGG 3 cut(s) 228, 524, 525
SduI GDGCHC 1 cut(s) 226
SetI ASST 6 cut(s) 154, 232, 264, 465, 568, 688
SfaNI GCATC 2 cut(s) 165, 261
SgrAI CRCCGGYG 1 cut(s) 418
SinI GGWCC 1 cut(s) 17
SmaI CCCGGG 1 cut(s) 525
SmiMI CAYNNNNRTG 2 cut(s) 591, 657
Sse9I AATT 2 cut(s) 199, 444
SspMI CTAG 1 cut(s) 687
StyD4I CCNGG 3 cut(s) 226, 522, 523
StyI CCWWGG 1 cut(s) 549
TaaI ACNGT 4 cut(s) 278, 295, 317, 371
TaqI TCGA 2 cut(s) 7, 373
TasI AATT 2 cut(s) 199, 444
TfiI GAWTC 5 cut(s) 4, 74, 85, 329, 607
Tru1I TTAA 3 cut(s) 27, 141, 324
Tru9I TTAA 3 cut(s) 27, 141, 324
TscAI CASTG 2 cut(s) 283, 522
TseI GCWGC 3 cut(s) 47, 249, 460
TspDTI ATGAA 4 cut(s) 98, 287, 501, 562
TspGWI ACGGA 2 cut(s) 30, 329
TspMI CCCGGG 1 cut(s) 523
TspRI CASTG 2 cut(s) 283, 522
VpaK11BI GGWCC 1 cut(s) 17
XceI RCATGY 1 cut(s) 510
XmaI CCCGGG 1 cut(s) 523
XspI CTAG 1 cut(s) 687
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.