Rmu_sc0024868.1_g000004
NAC Family

inactive purple acid phosphatase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0024868.1
OG0015175
Physical Location & Seq
Reverse (-)
9759 .. 12149
2391 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0024868.1_g000004.1.cds

Sequence Viewer

Length: 1290 bp
atgagtcgcatctgtcagtctcagcttgtcaaaagcttcagcagcagcagcagaagctacctgatcaaaagcccaatggactcgtcgtcctcagctgcaaactggaaccactctttcctctatctcatcttcatctacgctcttctctacttcctccacacccaaatcgctcacagattactcataggccatgcacccgtaaccatcaagaagaccagcccaaatctccctcttcgcttccgctccgatgggaccttcaagattctccaggtggctgatatgcattatgggaatggagggttgactcggtgtcgagacgtattggactccgagtttgcggcctgttctgatcggaacacgtcgctattcctcaagaggatgattgaggctgaaaagcctgatttcattgcttttacaggtgataatatatttgggccaagctctaccgacgctgctgaatcaatgattcgagcatttggtcctgccattaaatcaggcattccgtgggcagcagttttgggaaaccacgaccaagaatctacaatgaatcgtgaagaactcatgtcctttatctcccttatggactattcactttcacaagttaatccattagctgaagatcccttaggagaatggatgcaagacattgatggttttggcaattataatctgagagtatatggtgccccaggttcctatttggcaaatagcagcatcctcaaccttttctttcttgacagtggagacagagagactgttcatggagtacgaacttacggttggattaaggaatcacaactccgttggcttcgtggtgtttctgatcagggccacagtcgagatccagatcattcagacaatgctttttctccagataaaccaccggcgcttgcttttttccatatcccaattcctgagatccggcagctgtggaataaagacattgttggcaagtttcaggaggctgtggcatgttcatcagtgaacctgggagttttgcagacccttgtatccatgggagatgtgaaggctgtgttcattggacatgatcataccaatgacttttgtgggaatcttgatggtgtttggttctgttatggtgggggctttggatatcatggttatggaaagacggggtggccaagaagagctagggtcatattggcagaactcgggaaaggggagaaaggctggatgggagttgagaggattaggacatggaagtgtcttgatgatgagaaactgagcaagattgatgagcagttcttgtgggaataccatctatcatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0003993 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0042578 GO:0044237
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Metallophos

Protein Analysis

429

Amino Acids

48.17

Weight (kDa)

6.16

Isoelectric Point (pI)

44.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015175)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G57140
fragaria_vesca FvH4_4g07080
malus_domestica MD04G1168800.v1.1
prunus_persica Prupe.1G074200_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0399201
rosa_laevigata RLG00000009290
rosa_multiflora Rmu_co8469863.1_g000001 Rmu_sc0002582.1_g000004 Rmu_sc0024868.1_g000004
rosa_roxburghii Rroxscaffold_5G00344160
rosa_rugosa Rorug04G0015100
rosa_samantha Rh4AG093000 Rh4BG090800 Rh4CG101400 Rh4DG085300
rosa_wichuraiana Rw4G007660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 666
AccB1I GGYRCC 1 cut(s) 683
AccBSI CCGCTC 1 cut(s) 243
AciI CCGC 2 cut(s) 241, 338
AclWI GGATC 3 cut(s) 614, 836, 913
AcoI YGGCCR 1 cut(s) 1139
AcuI CTGAAG 2 cut(s) 22, 636
AfaI GTAC 1 cut(s) 768
AflIII ACRYGT 1 cut(s) 357
AgsI TTSAA 1 cut(s) 259
AhdI GACNNNNNGTC 2 cut(s) 85, 309
AjiI CACGTC 1 cut(s) 360
AjnI CCWGG 3 cut(s) 267, 688, 987
AjuI GAANNNNNNNTTGG 2 cut(s) 763, 795
AluBI AGCT 8 cut(s) 25, 36, 57, 95, 441, 614, 928, 1151
AluI AGCT 8 cut(s) 25, 36, 57, 95, 441, 614, 928, 1151
Alw26I GTCTC 4 cut(s) 24, 309, 738, 746
AlwI GGATC 3 cut(s) 614, 836, 913
Ama87I CYCGRG 1 cut(s) 1172
AoxI GGCC 5 cut(s) 187, 339, 434, 829, 1139
ApeKI GCWGC 8 cut(s) 42, 45, 48, 95, 452, 509, 711, 925
ArsI GACNNNNNNTTYG 2 cut(s) 317, 349
AspLEI GCGC 1 cut(s) 889
AspS9I GGNCC 4 cut(s) 252, 434, 479, 829
AsuHPI GGTGA 1 cut(s) 431
AvaI CYCGRG 1 cut(s) 1172
AvaII GGWCC 2 cut(s) 252, 479
AxyI CCTNAGG 1 cut(s) 625
BaeGI GKGCMC 1 cut(s) 688
BaeI ACNNNNGTAYC 2 cut(s) 993, 1026
BalI TGGCCA 1 cut(s) 1141
BanI GGYRCC 1 cut(s) 683
BbsI GAAGAC 1 cut(s) 218
BbvCI CCTCAGC 1 cut(s) 91
BbvI GCAGC 8 cut(s) 54, 57, 60, 82, 439, 521, 723, 937
BccI CCATC 6 cut(s) 212, 242, 644, 1073, 1189, 1287
BciT130I CCWGG 3 cut(s) 269, 690, 989
BciVI GTATCC 1 cut(s) 1021
BclI TGATCA 3 cut(s) 63, 823, 1048
BcoDI GTCTC 4 cut(s) 24, 309, 738, 746
BfaI CTAG 1 cut(s) 1152
BfoI RGCGCY 1 cut(s) 890
BfuI GTATCC 1 cut(s) 1021
BisI GCNGC 9 cut(s) 43, 46, 49, 96, 339, 453, 510, 712, 926
BlsI GCNGC 9 cut(s) 44, 47, 50, 97, 340, 454, 511, 713, 927
Bme1390I CCNGG 3 cut(s) 269, 690, 989
Bme18I GGWCC 2 cut(s) 252, 479
BmeRI GACNNNNNGTC 2 cut(s) 85, 309
BmeT110I CYCGRG 1 cut(s) 1172
BmgBI CACGTC 1 cut(s) 360
BmgT120I GGNCC 4 cut(s) 252, 434, 479, 829
BmiI GGNNCC 4 cut(s) 107, 253, 685, 694
BmrFI CCNGG 3 cut(s) 269, 690, 989
BmsI GCATC 3 cut(s) 18, 627, 723
BpiI GAAGAC 1 cut(s) 218
BpmI CTGGAG 2 cut(s) 251, 855
Bpu10I CCTNAGC 1 cut(s) 91
BpuEI CTTGAG 1 cut(s) 356
BsaBI GATNNNNATC 1 cut(s) 846
BsaJI CCNNGG 4 cut(s) 503, 688, 988, 1014
Bse118I RCCGGY 1 cut(s) 883
Bse1I ACTGG 1 cut(s) 107
Bse21I CCTNAGG 1 cut(s) 625
Bse3DI GCAATG 1 cut(s) 405
Bse8I GATNNNNATC 1 cut(s) 846
BseBI CCWGG 3 cut(s) 269, 690, 989
BseDI CCNNGG 4 cut(s) 503, 688, 988, 1014
BseGI GGATG 4 cut(s) 384, 642, 714, 1200
BseJI GATNNNNATC 1 cut(s) 846
BseMI GCAATG 1 cut(s) 405
BseMII CTCAG 5 cut(s) 35, 105, 662, 906, 1235
BseNI ACTGG 1 cut(s) 107
BseSI GKGCMC 1 cut(s) 688
BseXI GCAGC 8 cut(s) 54, 57, 60, 82, 439, 521, 723, 937
BshFI GGCC 5 cut(s) 189, 341, 436, 831, 1141
BshNI GGYRCC 1 cut(s) 683
BsiHKCI CYCGRG 1 cut(s) 1172
BsiSI CCGG 2 cut(s) 884, 922
BslFI GGGAC 1 cut(s) 265
BsmAI GTCTC 4 cut(s) 24, 309, 738, 746
BsmBI CGTCTC 1 cut(s) 309
BsmFI GGGAC 1 cut(s) 265
BsmI GAATGC 1 cut(s) 498
BsnI GGCC 5 cut(s) 189, 341, 436, 831, 1141
BsoBI CYCGRG 1 cut(s) 1172
Bsp1286I GDGCHC 1 cut(s) 688
Bsp143I GATC 8 cut(s) 63, 349, 619, 823, 841, 847, 918, 1048
Bsp19I CCATGG 1 cut(s) 1014
BspACI CCGC 2 cut(s) 241, 338
BspANI GGCC 5 cut(s) 189, 341, 436, 831, 1141
BspCNI CTCAG 5 cut(s) 34, 104, 663, 907, 1236
BspHI TCATGA 1 cut(s) 1286
BspLI GGNNCC 4 cut(s) 107, 253, 685, 694
BspPI GGATC 3 cut(s) 614, 836, 913
BspQI GCTCTTC 2 cut(s) 147, 1141
BspT107I GGYRCC 1 cut(s) 683
BsrBI CCGCTC 1 cut(s) 243
BsrDI GCAATG 1 cut(s) 405
BsrFI RCCGGY 1 cut(s) 883
BsrI ACTGG 1 cut(s) 107
BssAI RCCGGY 1 cut(s) 883
BssECI CCNNGG 4 cut(s) 503, 688, 988, 1014
BssMI GATC 8 cut(s) 63, 349, 619, 823, 841, 847, 918, 1048
BssT1I CCWWGG 1 cut(s) 1014
Bst2UI CCWGG 3 cut(s) 269, 690, 989
Bst4CI ACNGT 4 cut(s) 740, 757, 779, 836
Bst6I CTCTTC 3 cut(s) 147, 237, 1141
BstC8I GCNNGC 1 cut(s) 891
BstDEI CTNAG 6 cut(s) 21, 91, 625, 671, 915, 1244
BstDSI CCRYGG 2 cut(s) 503, 1014
BstF5I GGATG 4 cut(s) 384, 642, 714, 1200
BstH2I RGCGCY 1 cut(s) 890
BstHHI GCGC 1 cut(s) 889
BstKTI GATC 8 cut(s) 66, 352, 622, 826, 844, 850, 921, 1051
BstMAI GTCTC 4 cut(s) 24, 309, 738, 746
BstMBI GATC 8 cut(s) 63, 349, 619, 823, 841, 847, 918, 1048
BstMWI GCNNNNNNNGC 3 cut(s) 42, 48, 54
BstNI CCWGG 3 cut(s) 269, 690, 989
BstNSI RCATGY 1 cut(s) 975
BstSCI CCNGG 3 cut(s) 267, 688, 987
BstSLI GKGCMC 1 cut(s) 688
BstV1I GCAGC 8 cut(s) 54, 57, 60, 82, 439, 521, 723, 937
BstV2I GAAGAC 1 cut(s) 218
BstX2I RGATCY 3 cut(s) 619, 841, 918
BstYI RGATCY 3 cut(s) 619, 841, 918
Bsu36I CCTNAGG 1 cut(s) 625
BsuI GTATCC 1 cut(s) 1021
BsuRI GGCC 5 cut(s) 189, 341, 436, 831, 1141
BtgI CCRYGG 2 cut(s) 503, 1014
BtrI CACGTC 1 cut(s) 360
BtsCI GGATG 4 cut(s) 384, 642, 714, 1200
BtsIMutI CAGTG 2 cut(s) 745, 987
Cac8I GCNNGC 1 cut(s) 891
CciI TCATGA 1 cut(s) 1286
CfoI GCGC 1 cut(s) 889
Cfr10I RCCGGY 1 cut(s) 883
Cfr13I GGNCC 4 cut(s) 252, 434, 479, 829
CseI GACGC 1 cut(s) 458
Csp6I GTAC 1 cut(s) 767
CviAII CATG 9 cut(s) 191, 562, 761, 972, 1015, 1046, 1118, 1218, 1287
CviQI GTAC 1 cut(s) 767
DdeI CTNAG 6 cut(s) 21, 91, 625, 671, 915, 1244
DpnI GATC 8 cut(s) 65, 351, 621, 825, 843, 849, 920, 1050
DpnII GATC 8 cut(s) 63, 349, 619, 823, 841, 847, 918, 1048
DriI GACNNNNNGTC 2 cut(s) 85, 309
EaeI YGGCCR 1 cut(s) 1139
Eam1104I CTCTTC 3 cut(s) 147, 237, 1141
Eam1105I GACNNNNNGTC 2 cut(s) 85, 309
EarI CTCTTC 3 cut(s) 147, 237, 1141
Eco130I CCWWGG 1 cut(s) 1014
Eco32I GATATC 1 cut(s) 1115
Eco47I GGWCC 2 cut(s) 252, 479
Eco57I CTGAAG 2 cut(s) 22, 636
Eco81I CCTNAGG 1 cut(s) 625
Eco88I CYCGRG 1 cut(s) 1172
EcoO109I RGGNCCY 1 cut(s) 252
EcoRII CCWGG 3 cut(s) 267, 688, 987
EcoRV GATATC 1 cut(s) 1115
EcoT14I CCWWGG 1 cut(s) 1014
EcoT22I ATGCAT 1 cut(s) 285
ErhI CCWWGG 1 cut(s) 1014
Esp3I CGTCTC 1 cut(s) 309
FaeI CATG 9 cut(s) 194, 565, 764, 975, 1018, 1049, 1121, 1221, 1290
FaqI GGGAC 1 cut(s) 265
FatI CATG 9 cut(s) 190, 561, 760, 971, 1014, 1045, 1117, 1217, 1286
FbaI TGATCA 3 cut(s) 63, 823, 1048
Fnu4HI GCNGC 9 cut(s) 43, 46, 49, 96, 339, 453, 510, 712, 926
FokI GGATG 4 cut(s) 391, 649, 701, 1207
Fsp4HI GCNGC 9 cut(s) 43, 46, 49, 96, 339, 453, 510, 712, 926
FspBI CTAG 1 cut(s) 1152
GlaI GCGC 1 cut(s) 888
GluI GCNGC 9 cut(s) 43, 46, 49, 96, 339, 453, 510, 712, 926
GsuI CTGGAG 2 cut(s) 251, 855
HaeII RGCGCY 1 cut(s) 890
HaeIII GGCC 5 cut(s) 189, 341, 436, 831, 1141
HapII CCGG 2 cut(s) 884, 922
HgaI GACGC 1 cut(s) 458
HhaI GCGC 1 cut(s) 889
Hin1II CATG 9 cut(s) 194, 565, 764, 975, 1018, 1049, 1121, 1221, 1290
Hin6I GCGC 1 cut(s) 887
HinP1I GCGC 1 cut(s) 887
HincII GTYRAC 1 cut(s) 303
HindII GTYRAC 1 cut(s) 303
HindIII AAGCTT 1 cut(s) 34
HpaII CCGG 2 cut(s) 884, 922
HphI GGTGA 1 cut(s) 431
Hpy166II GTNNAC 2 cut(s) 303, 985
Hpy188I TCNGA 7 cut(s) 247, 331, 349, 354, 672, 823, 856
Hpy8I GTNNAC 2 cut(s) 303, 985
Hpy99I CGWCG 3 cut(s) 88, 364, 452
HpyAV CCTTC 2 cut(s) 265, 1021
HpyCH4III ACNGT 4 cut(s) 740, 757, 779, 836
HpyCH4IV ACGT 2 cut(s) 318, 359
HpyCH4V TGCA 5 cut(s) 98, 194, 283, 640, 1000
HpyF10VI GCNNNNNNNGC 3 cut(s) 42, 48, 54
HpyF3I CTNAG 6 cut(s) 21, 91, 625, 671, 915, 1244
HpySE526I ACGT 2 cut(s) 318, 359
Hsp92II CATG 9 cut(s) 194, 565, 764, 975, 1018, 1049, 1121, 1221, 1290
HspAI GCGC 1 cut(s) 887
Ksp22I TGATCA 3 cut(s) 63, 823, 1048
Kzo9I GATC 8 cut(s) 63, 349, 619, 823, 841, 847, 918, 1048
LguI GCTCTTC 2 cut(s) 147, 1141
LmnI GCTCC 1 cut(s) 248
Lsp1109I GCAGC 8 cut(s) 54, 57, 60, 82, 439, 521, 723, 937
LweI GCATC 3 cut(s) 18, 627, 723
MaeI CTAG 1 cut(s) 1152
MaeII ACGT 2 cut(s) 318, 359
MaeIII GTNAC 1 cut(s) 199
MalI GATC 8 cut(s) 65, 351, 621, 825, 843, 849, 920, 1050
MbiI CCGCTC 1 cut(s) 243
MboI GATC 8 cut(s) 63, 349, 619, 823, 841, 847, 918, 1048
MboII GAAGA 7 cut(s) 121, 134, 223, 224, 566, 629, 1158
MflI RGATCY 3 cut(s) 619, 841, 918
MhlI GDGCHC 1 cut(s) 688
MlsI TGGCCA 1 cut(s) 1141
MluCI AATT 2 cut(s) 661, 909
MluNI TGGCCA 1 cut(s) 1141
MlyI GAGTC 4 cut(s) 13, 74, 298, 320
MmeI TCCRAC 1 cut(s) 761
Mox20I TGGCCA 1 cut(s) 1141
Mph1103I ATGCAT 1 cut(s) 285
MscI TGGCCA 1 cut(s) 1141
MseI TTAA 3 cut(s) 489, 603, 786
MslI CAYNNNNRTG 3 cut(s) 1056, 1122, 1222
Msp20I TGGCCA 1 cut(s) 1141
MspA1I CMGCKG 2 cut(s) 95, 928
MspI CCGG 2 cut(s) 884, 922
MspR9I CCNGG 3 cut(s) 269, 690, 989
Mva1269I GAATGC 1 cut(s) 498
MvaI CCWGG 3 cut(s) 269, 690, 989
MwoI GCNNNNNNNGC 3 cut(s) 42, 48, 54
NcoI CCATGG 1 cut(s) 1014
NdeII GATC 8 cut(s) 63, 349, 619, 823, 841, 847, 918, 1048
NlaIII CATG 9 cut(s) 194, 565, 764, 975, 1018, 1049, 1121, 1221, 1290
NlaIV GGNNCC 4 cut(s) 107, 253, 685, 694
NsiI ATGCAT 1 cut(s) 285
NspI RCATGY 1 cut(s) 975
PagI TCATGA 1 cut(s) 1286
PciSI GCTCTTC 2 cut(s) 147, 1141
PctI GAATGC 1 cut(s) 498
PfeI GAWTC 7 cut(s) 262, 458, 466, 536, 547, 791, 1072
PkrI GCNGC 9 cut(s) 44, 47, 50, 97, 340, 454, 511, 713, 927
PleI GAGTC 4 cut(s) 12, 74, 298, 320
PpsI GAGTC 4 cut(s) 12, 74, 298, 320
PpuMI RGGWCCY 1 cut(s) 252
PsiI TTATAA 1 cut(s) 666
Psp5II RGGWCCY 1 cut(s) 252
Psp6I CCWGG 3 cut(s) 267, 688, 987
PspGI CCWGG 3 cut(s) 267, 688, 987
PspN4I GGNNCC 4 cut(s) 107, 253, 685, 694
PspPI GGNCC 4 cut(s) 252, 434, 479, 829
PspPPI RGGWCCY 1 cut(s) 252
PsuI RGATCY 3 cut(s) 619, 841, 918
PvuII CAGCTG 2 cut(s) 95, 928
RsaI GTAC 1 cut(s) 768
RsaNI GTAC 1 cut(s) 767
RseI CAYNNNNRTG 3 cut(s) 1056, 1122, 1222
SapI GCTCTTC 2 cut(s) 147, 1141
SaqAI TTAA 3 cut(s) 489, 603, 786
SatI GCNGC 9 cut(s) 43, 46, 49, 96, 339, 453, 510, 712, 926
Sau3AI GATC 8 cut(s) 63, 349, 619, 823, 841, 847, 918, 1048
Sau96I GGNCC 4 cut(s) 252, 434, 479, 829
SchI GAGTC 4 cut(s) 13, 74, 298, 320
ScrFI CCNGG 3 cut(s) 269, 690, 989
SduI GDGCHC 1 cut(s) 688
SfaNI GCATC 3 cut(s) 18, 627, 723
SgrAI CRCCGGYG 1 cut(s) 883
SinI GGWCC 2 cut(s) 252, 479
SmiMI CAYNNNNRTG 3 cut(s) 1056, 1122, 1222
SmlI CTYRAG 1 cut(s) 371
SmoI CTYRAG 1 cut(s) 371
Sse9I AATT 2 cut(s) 661, 909
SsiI CCGC 2 cut(s) 241, 338
SspMI CTAG 1 cut(s) 1152
StyD4I CCNGG 3 cut(s) 267, 688, 987
StyI CCWWGG 1 cut(s) 1014
TaaI ACNGT 4 cut(s) 740, 757, 779, 836
TaiI ACGT 2 cut(s) 321, 362
TaqI TCGA 3 cut(s) 313, 469, 838
TasI AATT 2 cut(s) 661, 909
TauI GCSGC 1 cut(s) 341
TfiI GAWTC 7 cut(s) 262, 458, 466, 536, 547, 791, 1072
Tru1I TTAA 3 cut(s) 489, 603, 786
Tru9I TTAA 3 cut(s) 489, 603, 786
TscAI CASTG 2 cut(s) 745, 987
TseI GCWGC 8 cut(s) 42, 45, 48, 95, 452, 509, 711, 925
TspDTI ATGAA 6 cut(s) 121, 394, 560, 749, 966, 1027
TspGWI ACGGA 2 cut(s) 492, 791
TspRI CASTG 2 cut(s) 745, 987
VpaK11BI GGWCC 2 cut(s) 252, 479
XceI RCATGY 1 cut(s) 975
XspI CTAG 1 cut(s) 1152
Zsp2I ATGCAT 1 cut(s) 285
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.