Rw4G007660
NAC Family

inactive purple acid phosphatase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0015175
Physical Location & Seq
Reverse (-)
16465710 .. 16468431
2722 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G007660.1

Sequence Viewer

Length: 1008 bp
ATGCATTATGGGAATGGAGGGTTAACTCGGTGTCGAGACGTATTGGACTCCGAGTTTGCGGCATGTTCTGATCGGAACACGTCGCTGTTCCTCAAGAGGATGATTGAAGCTGAAAAGCCTGATTTCATTGCCTTTACAGGTGATAATATATTTGGGCCAAGCTCTACCGACGCTGCTGAATCAATGATTCGAGCATTTGGTCCTGCCATTAAATCAGGCATTCCGTGGGCAGCAGTTTTGGGAAACCACGACCAAGAATCTACAATGAATCGTGAAGAACTCATGTCCTTTATCTCCCTTATGGACTATTCACTTTCACAAGTTAATCCATTAGCTGAAGATCCCTTAGGAGAATGGATGCAAGACATTGATGGTTTTGGCAATTATAATCTGAGAGTATATGGTGCCCCAGGTTCCTACTTGGCAAATAGCAGCATCCTCAACCTTTTCTTTCTTGACAGTGGAGACAGAGAGACTGTACATGGAGTACGAACTTATGGTTGGATTAAGGAATCACAACTCCGTTGGCTTCGTGGTGTTTCTCAGGGCCACAGTCGAGATCCAGATCACTCAGACAATGCTTTTTCTCCAGATAAACCACCGGCGCTTGCTTTTTTCCATATCCCAATTCCTGAGATCCGGCAGCTGTGGAATAAAGACATTGTTGGCAAGTTTCAGGAGGCTGTGGCATGTTCATCAGTGAACCCGGGAGTTTTGCAGACCCTTGTATCCATGGGAGATGTGAAAGCTGTGTTCATTGGACATGATCATACCAATGACTTTTGTGGGAATCTTGATGGTGTTTGGTTCTGTTATGGTGGGGGCTTTGGATATCATGGTTATGGAAAGACGGGGTGGCCAAGAAGAGCTAGGGTCATATTGGCAGAACTCGGGAAAGGGGAGAAAGGCTGGATGGGAGTTGAGAGGATTAGGACATGGAAGAGTCTTGATGATGAGAAACTGACCAAGATTGATGAGCAGTTCTTGTGGGAATACCATCTATCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0003993 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0042578 GO:0044237
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Metallophos

Protein Analysis

335

Amino Acids

37.49

Weight (kDa)

5.3

Isoelectric Point (pI)

38.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Metallophos PF00149 30 - 258 1.2e-12 Calcineurin-like phosphoesterase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015175)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G57140
fragaria_vesca FvH4_4g07080
malus_domestica MD04G1168800.v1.1
prunus_persica Prupe.1G074200_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0399201
rosa_laevigata RLG00000009290
rosa_multiflora Rmu_co8469863.1_g000001 Rmu_sc0002582.1_g000004 Rmu_sc0024868.1_g000004
rosa_roxburghii Rroxscaffold_5G00344160
rosa_rugosa Rorug04G0015100
rosa_samantha Rh4AG093000 Rh4BG090800 Rh4CG101400 Rh4DG085300
rosa_wichuraiana Rw4G007660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 387
AccB1I GGYRCC 1 cut(s) 404
AciI CCGC 1 cut(s) 59
AclWI GGATC 3 cut(s) 335, 554, 631
AcoI YGGCCR 1 cut(s) 857
AcuI CTGAAG 1 cut(s) 357
AfaI GTAC 2 cut(s) 480, 489
AflIII ACRYGT 1 cut(s) 78
AgsI TTSAA 1 cut(s) 107
AjiI CACGTC 1 cut(s) 81
AjnI CCWGG 1 cut(s) 409
AjuI GAANNNNNNNTTGG 2 cut(s) 484, 516
AluBI AGCT 6 cut(s) 110, 162, 335, 646, 749, 869
AluI AGCT 6 cut(s) 110, 162, 335, 646, 749, 869
Alw26I GTCTC 3 cut(s) 30, 459, 467
AlwI GGATC 3 cut(s) 335, 554, 631
Ama87I CYCGRG 2 cut(s) 706, 890
AoxI GGCC 3 cut(s) 155, 547, 857
ApeKI GCWGC 4 cut(s) 173, 230, 432, 643
ArsI GACNNNNNNTTYG 2 cut(s) 38, 70
AspLEI GCGC 1 cut(s) 607
AspS9I GGNCC 3 cut(s) 155, 200, 547
AsuC2I CCSGG 2 cut(s) 707, 708
AsuHPI GGTGA 1 cut(s) 152
AvaI CYCGRG 2 cut(s) 706, 890
AvaII GGWCC 1 cut(s) 200
AxyI CCTNAGG 1 cut(s) 346
BaeGI GKGCMC 1 cut(s) 409
BaeI ACNNNNGTAYC 2 cut(s) 711, 744
BalI TGGCCA 1 cut(s) 859
BanI GGYRCC 1 cut(s) 404
BbvI GCAGC 4 cut(s) 160, 242, 444, 655
BccI CCATC 4 cut(s) 365, 791, 907, 1005
BciT130I CCWGG 1 cut(s) 411
BciVI GTATCC 1 cut(s) 739
BclI TGATCA 1 cut(s) 766
BcnI CCSGG 2 cut(s) 707, 708
BcoDI GTCTC 3 cut(s) 30, 459, 467
BfaI CTAG 1 cut(s) 870
BfoI RGCGCY 1 cut(s) 608
BfuI GTATCC 1 cut(s) 739
BisI GCNGC 5 cut(s) 60, 174, 231, 433, 644
BlsI GCNGC 5 cut(s) 61, 175, 232, 434, 645
Bme1390I CCNGG 3 cut(s) 411, 707, 708
Bme18I GGWCC 1 cut(s) 200
BmeT110I CYCGRG 2 cut(s) 706, 890
BmgBI CACGTC 1 cut(s) 81
BmgT120I GGNCC 3 cut(s) 155, 200, 547
BmiI GGNNCC 2 cut(s) 406, 415
BmrFI CCNGG 3 cut(s) 411, 707, 708
BmsI GCATC 2 cut(s) 348, 444
BpmI CTGGAG 1 cut(s) 573
BpuEI CTTGAG 1 cut(s) 77
BpuMI CCSGG 2 cut(s) 707, 708
BsaBI GATNNNNATC 1 cut(s) 564
BsaJI CCNNGG 4 cut(s) 224, 409, 706, 732
Bse118I RCCGGY 1 cut(s) 601
Bse21I CCTNAGG 1 cut(s) 346
Bse3DI GCAATG 1 cut(s) 126
Bse8I GATNNNNATC 1 cut(s) 564
BseBI CCWGG 1 cut(s) 411
BseDI CCNNGG 4 cut(s) 224, 409, 706, 732
BseGI GGATG 4 cut(s) 105, 363, 435, 918
BseJI GATNNNNATC 1 cut(s) 564
BseMI GCAATG 1 cut(s) 126
BseMII CTCAG 4 cut(s) 383, 557, 585, 624
BseSI GKGCMC 1 cut(s) 409
BseXI GCAGC 4 cut(s) 160, 242, 444, 655
BshFI GGCC 3 cut(s) 157, 549, 859
BshNI GGYRCC 1 cut(s) 404
BsiHKCI CYCGRG 2 cut(s) 706, 890
BsiSI CCGG 3 cut(s) 602, 640, 707
BsmAI GTCTC 3 cut(s) 30, 459, 467
BsmBI CGTCTC 1 cut(s) 30
BsmI GAATGC 1 cut(s) 219
BsnI GGCC 3 cut(s) 157, 549, 859
BsoBI CYCGRG 2 cut(s) 706, 890
Bsp1286I GDGCHC 1 cut(s) 409
Bsp1407I TGTACA 1 cut(s) 478
Bsp143I GATC 6 cut(s) 70, 340, 559, 565, 636, 766
Bsp19I CCATGG 1 cut(s) 732
BspACI CCGC 1 cut(s) 59
BspANI GGCC 3 cut(s) 157, 549, 859
BspCNI CTCAG 4 cut(s) 384, 556, 584, 625
BspHI TCATGA 1 cut(s) 1004
BspLI GGNNCC 2 cut(s) 406, 415
BspPI GGATC 3 cut(s) 335, 554, 631
BspQI GCTCTTC 1 cut(s) 859
BspT107I GGYRCC 1 cut(s) 404
BsrDI GCAATG 1 cut(s) 126
BsrFI RCCGGY 1 cut(s) 601
BsrGI TGTACA 1 cut(s) 478
BssAI RCCGGY 1 cut(s) 601
BssECI CCNNGG 4 cut(s) 224, 409, 706, 732
BssMI GATC 6 cut(s) 70, 340, 559, 565, 636, 766
BssT1I CCWWGG 1 cut(s) 732
Bst2UI CCWGG 1 cut(s) 411
Bst4CI ACNGT 3 cut(s) 461, 478, 554
Bst6I CTCTTC 2 cut(s) 859, 935
BstAUI TGTACA 1 cut(s) 478
BstC8I GCNNGC 1 cut(s) 609
BstDEI CTNAG 5 cut(s) 346, 392, 543, 571, 633
BstDSI CCRYGG 2 cut(s) 224, 732
BstF5I GGATG 4 cut(s) 105, 363, 435, 918
BstH2I RGCGCY 1 cut(s) 608
BstHHI GCGC 1 cut(s) 607
BstKTI GATC 6 cut(s) 73, 343, 562, 568, 639, 769
BstMAI GTCTC 3 cut(s) 30, 459, 467
BstMBI GATC 6 cut(s) 70, 340, 559, 565, 636, 766
BstNI CCWGG 1 cut(s) 411
BstNSI RCATGY 2 cut(s) 66, 693
BstSCI CCNGG 3 cut(s) 409, 705, 706
BstSLI GKGCMC 1 cut(s) 409
BstV1I GCAGC 4 cut(s) 160, 242, 444, 655
BstX2I RGATCY 3 cut(s) 340, 559, 636
BstYI RGATCY 3 cut(s) 340, 559, 636
Bsu36I CCTNAGG 1 cut(s) 346
BsuI GTATCC 1 cut(s) 739
BsuRI GGCC 3 cut(s) 157, 549, 859
BtgI CCRYGG 2 cut(s) 224, 732
BtrI CACGTC 1 cut(s) 81
BtsCI GGATG 4 cut(s) 105, 363, 435, 918
BtsIMutI CAGTG 2 cut(s) 466, 705
Cac8I GCNNGC 1 cut(s) 609
CciI TCATGA 1 cut(s) 1004
CfoI GCGC 1 cut(s) 607
Cfr10I RCCGGY 1 cut(s) 601
Cfr13I GGNCC 3 cut(s) 155, 200, 547
Cfr9I CCCGGG 1 cut(s) 706
CseI GACGC 1 cut(s) 179
Csp6I GTAC 2 cut(s) 479, 488
CviAII CATG 9 cut(s) 63, 283, 482, 690, 733, 764, 836, 936, 1005
CviQI GTAC 2 cut(s) 479, 488
DdeI CTNAG 5 cut(s) 346, 392, 543, 571, 633
DpnI GATC 6 cut(s) 72, 342, 561, 567, 638, 768
DpnII GATC 6 cut(s) 70, 340, 559, 565, 636, 766
EaeI YGGCCR 1 cut(s) 857
Eam1104I CTCTTC 2 cut(s) 859, 935
EarI CTCTTC 2 cut(s) 859, 935
Eco130I CCWWGG 1 cut(s) 732
Eco32I GATATC 1 cut(s) 833
Eco47I GGWCC 1 cut(s) 200
Eco57I CTGAAG 1 cut(s) 357
Eco81I CCTNAGG 1 cut(s) 346
Eco88I CYCGRG 2 cut(s) 706, 890
EcoRII CCWGG 1 cut(s) 409
EcoRV GATATC 1 cut(s) 833
EcoT14I CCWWGG 1 cut(s) 732
EcoT22I ATGCAT 1 cut(s) 6
ErhI CCWWGG 1 cut(s) 732
Esp3I CGTCTC 1 cut(s) 30
FaeI CATG 9 cut(s) 66, 286, 485, 693, 736, 767, 839, 939, 1008
FatI CATG 9 cut(s) 62, 282, 481, 689, 732, 763, 835, 935, 1004
FbaI TGATCA 1 cut(s) 766
Fnu4HI GCNGC 5 cut(s) 60, 174, 231, 433, 644
FokI GGATG 4 cut(s) 112, 370, 422, 925
Fsp4HI GCNGC 5 cut(s) 60, 174, 231, 433, 644
FspBI CTAG 1 cut(s) 870
GlaI GCGC 1 cut(s) 606
GluI GCNGC 5 cut(s) 60, 174, 231, 433, 644
GsuI CTGGAG 1 cut(s) 573
HaeII RGCGCY 1 cut(s) 608
HaeIII GGCC 3 cut(s) 157, 549, 859
HapII CCGG 3 cut(s) 602, 640, 707
HgaI GACGC 1 cut(s) 179
HhaI GCGC 1 cut(s) 607
Hin1II CATG 9 cut(s) 66, 286, 485, 693, 736, 767, 839, 939, 1008
Hin6I GCGC 1 cut(s) 605
HinP1I GCGC 1 cut(s) 605
HincII GTYRAC 1 cut(s) 24
HindII GTYRAC 1 cut(s) 24
HinfI GANTC 8 cut(s) 47, 179, 187, 257, 268, 512, 790, 943
HpaI GTTAAC 1 cut(s) 24
HpaII CCGG 3 cut(s) 602, 640, 707
HphI GGTGA 1 cut(s) 152
Hpy166II GTNNAC 2 cut(s) 24, 703
Hpy188I TCNGA 5 cut(s) 52, 70, 75, 393, 574
Hpy8I GTNNAC 2 cut(s) 24, 703
Hpy99I CGWCG 2 cut(s) 85, 173
HpyCH4III ACNGT 3 cut(s) 461, 478, 554
HpyCH4IV ACGT 2 cut(s) 39, 80
HpyCH4V TGCA 3 cut(s) 4, 361, 718
HpyF3I CTNAG 5 cut(s) 346, 392, 543, 571, 633
HpySE526I ACGT 2 cut(s) 39, 80
Hsp92II CATG 9 cut(s) 66, 286, 485, 693, 736, 767, 839, 939, 1008
HspAI GCGC 1 cut(s) 605
Ksp22I TGATCA 1 cut(s) 766
KspAI GTTAAC 1 cut(s) 24
Kzo9I GATC 6 cut(s) 70, 340, 559, 565, 636, 766
LguI GCTCTTC 1 cut(s) 859
Lsp1109I GCAGC 4 cut(s) 160, 242, 444, 655
LweI GCATC 2 cut(s) 348, 444
MaeI CTAG 1 cut(s) 870
MaeII ACGT 2 cut(s) 39, 80
MalI GATC 6 cut(s) 72, 342, 561, 567, 638, 768
MboI GATC 6 cut(s) 70, 340, 559, 565, 636, 766
MboII GAAGA 4 cut(s) 287, 350, 876, 952
MflI RGATCY 3 cut(s) 340, 559, 636
MhlI GDGCHC 1 cut(s) 409
MlsI TGGCCA 1 cut(s) 859
MluCI AATT 2 cut(s) 382, 627
MluNI TGGCCA 1 cut(s) 859
MlyI GAGTC 2 cut(s) 41, 952
MmeI TCCRAC 1 cut(s) 482
MnlI CCTC 6 cut(s) 11, 90, 101, 449, 673, 918
Mox20I TGGCCA 1 cut(s) 859
Mph1103I ATGCAT 1 cut(s) 6
MscI TGGCCA 1 cut(s) 859
MseI TTAA 4 cut(s) 23, 210, 324, 507
MslI CAYNNNNRTG 2 cut(s) 774, 840
Msp20I TGGCCA 1 cut(s) 859
MspA1I CMGCKG 1 cut(s) 646
MspI CCGG 3 cut(s) 602, 640, 707
MspR9I CCNGG 3 cut(s) 411, 707, 708
Mva1269I GAATGC 1 cut(s) 219
MvaI CCWGG 1 cut(s) 411
NciI CCSGG 2 cut(s) 707, 708
NcoI CCATGG 1 cut(s) 732
NdeII GATC 6 cut(s) 70, 340, 559, 565, 636, 766
NlaIII CATG 9 cut(s) 66, 286, 485, 693, 736, 767, 839, 939, 1008
NlaIV GGNNCC 2 cut(s) 406, 415
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 2 cut(s) 66, 693
PagI TCATGA 1 cut(s) 1004
PciSI GCTCTTC 1 cut(s) 859
PctI GAATGC 1 cut(s) 219
PfeI GAWTC 6 cut(s) 179, 187, 257, 268, 512, 790
PkrI GCNGC 5 cut(s) 61, 175, 232, 434, 645
PleI GAGTC 2 cut(s) 41, 951
PpsI GAGTC 2 cut(s) 41, 951
PsiI TTATAA 1 cut(s) 387
Psp6I CCWGG 1 cut(s) 409
PspGI CCWGG 1 cut(s) 409
PspN4I GGNNCC 2 cut(s) 406, 415
PspPI GGNCC 3 cut(s) 155, 200, 547
PsuI RGATCY 3 cut(s) 340, 559, 636
PvuII CAGCTG 1 cut(s) 646
RsaI GTAC 2 cut(s) 480, 489
RsaNI GTAC 2 cut(s) 479, 488
RseI CAYNNNNRTG 2 cut(s) 774, 840
SapI GCTCTTC 1 cut(s) 859
SaqAI TTAA 4 cut(s) 23, 210, 324, 507
SatI GCNGC 5 cut(s) 60, 174, 231, 433, 644
Sau3AI GATC 6 cut(s) 70, 340, 559, 565, 636, 766
Sau96I GGNCC 3 cut(s) 155, 200, 547
SchI GAGTC 2 cut(s) 41, 952
ScrFI CCNGG 3 cut(s) 411, 707, 708
SduI GDGCHC 1 cut(s) 409
SfaNI GCATC 2 cut(s) 348, 444
SgrAI CRCCGGYG 1 cut(s) 601
SinI GGWCC 1 cut(s) 200
SmaI CCCGGG 1 cut(s) 708
SmiMI CAYNNNNRTG 2 cut(s) 774, 840
SmlI CTYRAG 1 cut(s) 92
SmoI CTYRAG 1 cut(s) 92
Sse9I AATT 2 cut(s) 382, 627
SsiI CCGC 1 cut(s) 59
SspMI CTAG 1 cut(s) 870
StyD4I CCNGG 3 cut(s) 409, 705, 706
StyI CCWWGG 1 cut(s) 732
TaaI ACNGT 3 cut(s) 461, 478, 554
TaiI ACGT 2 cut(s) 42, 83
TaqI TCGA 3 cut(s) 34, 190, 556
TasI AATT 2 cut(s) 382, 627
TatI WGTACW 1 cut(s) 478
TauI GCSGC 1 cut(s) 62
TfiI GAWTC 6 cut(s) 179, 187, 257, 268, 512, 790
Tru1I TTAA 4 cut(s) 23, 210, 324, 507
Tru9I TTAA 4 cut(s) 23, 210, 324, 507
TscAI CASTG 2 cut(s) 466, 705
TseI GCWGC 4 cut(s) 173, 230, 432, 643
TspDTI ATGAA 4 cut(s) 115, 281, 684, 745
TspGWI ACGGA 2 cut(s) 213, 512
TspMI CCCGGG 1 cut(s) 706
TspRI CASTG 2 cut(s) 466, 705
VpaK11BI GGWCC 1 cut(s) 200
XceI RCATGY 2 cut(s) 66, 693
XmaI CCCGGG 1 cut(s) 706
XspI CTAG 1 cut(s) 870
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.