TdcA1-ORF2 protein
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_4g08261 |
| malus_domestica | MD15G1044300.v1.1 |
| pyrus_communis | pycom15g04120 |
| rosa_laevigata | RLG00000009074 RLG00000009077 |
| rosa_samantha | Rh4AG113400 Rh4AG113700 Rh4AG113900 Rh4BG106100 Rh4CG120500 Rh4DG105400 Rh6CG035400 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 161 |
| Acc36I | ACCTGC | 1 cut(s) | 161 |
| AccBSI | CCGCTC | 1 cut(s) | 132 |
| AciI | CCGC | 2 cut(s) | 130, 144 |
| AclI | AACGTT | 2 cut(s) | 91, 299 |
| AcsI | RAATTY | 1 cut(s) | 468 |
| AcuI | CTGAAG | 1 cut(s) | 495 |
| AfaI | GTAC | 2 cut(s) | 209, 416 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 322 |
| AgsI | TTSAA | 3 cut(s) | 84, 101, 257 |
| AoxI | GGCC | 1 cut(s) | 60 |
| ApoI | RAATTY | 1 cut(s) | 468 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 47, 79 |
| AsuHPI | GGTGA | 1 cut(s) | 337 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 248, 281 |
| BbvCI | CCTCAGC | 1 cut(s) | 70 |
| BfaI | CTAG | 2 cut(s) | 426, 485 |
| BfmI | CTRYAG | 1 cut(s) | 365 |
| BfuAI | ACCTGC | 1 cut(s) | 161 |
| BglII | AGATCT | 1 cut(s) | 490 |
| BmsI | GCATC | 3 cut(s) | 226, 324, 382 |
| Bpu10I | CCTNAGC | 1 cut(s) | 70 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 322 |
| BseGI | GGATG | 2 cut(s) | 339, 417 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 322 |
| BseMII | CTCAG | 1 cut(s) | 84 |
| BshFI | GGCC | 1 cut(s) | 62 |
| BslFI | GGGAC | 1 cut(s) | 261 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 322 |
| BsmFI | GGGAC | 1 cut(s) | 261 |
| BsnI | GGCC | 1 cut(s) | 62 |
| Bsp1407I | TGTACA | 1 cut(s) | 414 |
| Bsp143I | GATC | 3 cut(s) | 124, 481, 490 |
| BspACI | CCGC | 2 cut(s) | 130, 144 |
| BspANI | GGCC | 1 cut(s) | 62 |
| BspCNI | CTCAG | 1 cut(s) | 83 |
| BspMAI | CTGCAG | 1 cut(s) | 369 |
| BspMI | ACCTGC | 1 cut(s) | 161 |
| BsrBI | CCGCTC | 1 cut(s) | 132 |
| BsrGI | TGTACA | 1 cut(s) | 414 |
| BssMI | GATC | 3 cut(s) | 124, 481, 490 |
| Bst4CI | ACNGT | 2 cut(s) | 121, 220 |
| Bst6I | CTCTTC | 1 cut(s) | 276 |
| BstAUI | TGTACA | 1 cut(s) | 414 |
| BstC8I | GCNNGC | 1 cut(s) | 144 |
| BstDEI | CTNAG | 2 cut(s) | 32, 70 |
| BstF5I | GGATG | 2 cut(s) | 339, 417 |
| BstKTI | GATC | 3 cut(s) | 127, 484, 493 |
| BstMBI | GATC | 3 cut(s) | 124, 481, 490 |
| BstSFI | CTRYAG | 1 cut(s) | 365 |
| BstX2I | RGATCY | 1 cut(s) | 490 |
| BstYI | RGATCY | 1 cut(s) | 490 |
| BsuRI | GGCC | 1 cut(s) | 62 |
| BtsCI | GGATG | 2 cut(s) | 339, 417 |
| BtsI | GCAGTG | 1 cut(s) | 407 |
| BtsIMutI | CAGTG | 3 cut(s) | 117, 216, 407 |
| BveI | ACCTGC | 1 cut(s) | 161 |
| Cac8I | GCNNGC | 1 cut(s) | 144 |
| Csp6I | GTAC | 2 cut(s) | 208, 415 |
| CviAII | CATG | 1 cut(s) | 278 |
| CviJI | RGCY | 3 cut(s) | 36, 62, 196 |
| CviKI_1 | RGCY | 3 cut(s) | 36, 62, 196 |
| CviQI | GTAC | 2 cut(s) | 208, 415 |
| DdeI | CTNAG | 2 cut(s) | 32, 70 |
| DpnI | GATC | 3 cut(s) | 126, 483, 492 |
| DpnII | GATC | 3 cut(s) | 124, 481, 490 |
| Eam1104I | CTCTTC | 1 cut(s) | 276 |
| EarI | CTCTTC | 1 cut(s) | 276 |
| Eco147I | AGGCCT | 1 cut(s) | 62 |
| Eco57I | CTGAAG | 1 cut(s) | 495 |
| FaeI | CATG | 1 cut(s) | 281 |
| FaiI | YATR | 8 cut(s) | 26, 111, 189, 231, 261, 279, 291, 310 |
| FaqI | GGGAC | 1 cut(s) | 261 |
| FatI | CATG | 1 cut(s) | 277 |
| FauI | CCCGC | 1 cut(s) | 151 |
| FokI | GGATG | 2 cut(s) | 346, 404 |
| FspBI | CTAG | 2 cut(s) | 426, 485 |
| HaeIII | GGCC | 1 cut(s) | 62 |
| Hin1II | CATG | 1 cut(s) | 281 |
| HinfI | GANTC | 1 cut(s) | 80 |
| HphI | GGTGA | 1 cut(s) | 337 |
| Hpy166II | GTNNAC | 2 cut(s) | 95, 407 |
| Hpy188I | TCNGA | 2 cut(s) | 270, 475 |
| Hpy188III | TCNNGA | 4 cut(s) | 347, 431, 485, 494 |
| Hpy8I | GTNNAC | 2 cut(s) | 95, 407 |
| HpyCH4III | ACNGT | 2 cut(s) | 121, 220 |
| HpyCH4IV | ACGT | 3 cut(s) | 91, 299, 343 |
| HpyCH4V | TGCA | 5 cut(s) | 156, 213, 337, 367, 373 |
| HpyF3I | CTNAG | 2 cut(s) | 32, 70 |
| HpySE526I | ACGT | 3 cut(s) | 91, 299, 343 |
| Hsp92II | CATG | 1 cut(s) | 281 |
| Kzo9I | GATC | 3 cut(s) | 124, 481, 490 |
| LpnPI | CCDG | 5 cut(s) | 60, 166, 259, 318, 479 |
| LweI | GCATC | 3 cut(s) | 226, 324, 382 |
| MaeI | CTAG | 2 cut(s) | 426, 485 |
| MaeII | ACGT | 3 cut(s) | 91, 299, 343 |
| MaeIII | GTNAC | 2 cut(s) | 325, 428 |
| MalI | GATC | 3 cut(s) | 126, 483, 492 |
| MbiI | CCGCTC | 1 cut(s) | 132 |
| MboI | GATC | 3 cut(s) | 124, 481, 490 |
| MboII | GAAGA | 7 cut(s) | 235, 293, 461, 467, 473, 488, 500 |
| MflI | RGATCY | 1 cut(s) | 490 |
| MluCI | AATT | 1 cut(s) | 468 |
| MnlI | CCTC | 8 cut(s) | 47, 79, 172, 180, 186, 279, 324, 496 |
| MseI | TTAA | 1 cut(s) | 441 |
| NdeII | GATC | 3 cut(s) | 124, 481, 490 |
| NlaIII | CATG | 1 cut(s) | 281 |
| NmuCI | GTSAC | 2 cut(s) | 325, 428 |
| PaqCI | CACCTGC | 1 cut(s) | 161 |
| PceI | AGGCCT | 1 cut(s) | 62 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 507 |
| PfeI | GAWTC | 1 cut(s) | 80 |
| Psp1406I | AACGTT | 2 cut(s) | 91, 299 |
| PstI | CTGCAG | 1 cut(s) | 369 |
| PsuI | RGATCY | 1 cut(s) | 490 |
| RsaI | GTAC | 2 cut(s) | 209, 416 |
| RsaNI | GTAC | 2 cut(s) | 208, 415 |
| SaqAI | TTAA | 1 cut(s) | 441 |
| Sau3AI | GATC | 3 cut(s) | 124, 481, 490 |
| SetI | ASST | 5 cut(s) | 94, 155, 302, 346, 427 |
| SfaNI | GCATC | 3 cut(s) | 226, 324, 382 |
| SfcI | CTRYAG | 1 cut(s) | 365 |
| Sse9I | AATT | 1 cut(s) | 468 |
| SseBI | AGGCCT | 1 cut(s) | 62 |
| SsiI | CCGC | 2 cut(s) | 130, 144 |
| SspMI | CTAG | 2 cut(s) | 426, 485 |
| StuI | AGGCCT | 1 cut(s) | 62 |
| TaaI | ACNGT | 2 cut(s) | 121, 220 |
| TaiI | ACGT | 3 cut(s) | 94, 302, 346 |
| TaqI | TCGA | 1 cut(s) | 396 |
| TasI | AATT | 1 cut(s) | 468 |
| TatI | WGTACW | 1 cut(s) | 414 |
| TfiI | GAWTC | 1 cut(s) | 80 |
| Tru1I | TTAA | 1 cut(s) | 441 |
| Tru9I | TTAA | 1 cut(s) | 441 |
| TscAI | CASTG | 3 cut(s) | 124, 223, 414 |
| TseFI | GTSAC | 2 cut(s) | 325, 428 |
| Tsp45I | GTSAC | 2 cut(s) | 325, 428 |
| TspDTI | ATGAA | 6 cut(s) | 294, 427, 462, 468, 474, 480 |
| TspRI | CASTG | 3 cut(s) | 124, 223, 414 |
| XapI | RAATTY | 1 cut(s) | 468 |
| XbaI | TCTAGA | 1 cut(s) | 484 |
| XspI | CTAG | 2 cut(s) | 426, 485 |