Rh4BG106100

Belongs to the peptidase A1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0017644
Physical Location & Seq
Forward (+)
18204008 .. 18212988
8981 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG106100.1

Sequence Viewer

Length: 633 bp
ATGAGTAGCTATTGCAAATCGAATACCAGGTTAGCTCCTATGATTTCTAATAACTCTCTGCCTTCATCTCTTCATGGTGGGACAACGAAGAGGTGGAGTCCACCAAGAGCTGGTTACCTCAAACTCAATGTCAATGCTGCGTGTGACCCCAAGAATAGAAAACTAGGTCTGGGAGCGATGAGGAAGGCATCTCTTGAAGTGGTACACAAGCATGGGCCATGCTCTCATCTCCCTCAACACCAAGCGACTGCTACGAATCACACTCAAATTCTAGAGCAAGACCAAGTGCGAGTCAACTCAATCAACTCCCAGATTTCCAAGAAATTGAACGGCAACGAGGATCTAAGCCAATCAAAGGCCACCACCCTCCCGACCCGGTGGGCTACCAGCCAAGGTGCAAGCAACTACGTGGTGACTGTGGGATTGGGCACACCTAACAAACAACTTTCGCTCGAATTTGACACCGGAAGCTATCTCACTTGGACTCAATGTCAACCTTGTGCTGGCTCTTGCTACCCACAAAAGGAGCCCATTTTCGATCCCTCGGCCTCCAGCTCATATACCAACATTTCCTGTAATAGCACGGACTGCGTCCAACTCAAGACAACTACGAGTAAATACCTAGAACCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04071 ko04140 ko04142 ko04210 ko04915 ko05152 map04071 map04140 map04142 map04210 map04915 map05152
Pfam Domains
Protein Families
TAXi_C TAXi_N

Protein Analysis

210

Amino Acids

22.85

Weight (kDa)

9.22

Isoelectric Point (pI)

41.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Asp PF00026 135 - 189 2.5e-08 Eukaryotic aspartyl protease
TAXi_N PF14543 136 - 201 3.4e-20 Xylanase inhibitor N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017644)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g08261
malus_domestica MD15G1044300.v1.1
pyrus_communis pycom15g04120
rosa_laevigata RLG00000009074 RLG00000009077
rosa_samantha Rh4AG113400 Rh4AG113700 Rh4AG113900 Rh4BG106100 Rh4CG120500 Rh4DG105400 Rh6CG035400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 110
AclWI GGATC 2 cut(s) 348, 533
AcsI RAATTY 2 cut(s) 267, 455
AfaI GTAC 1 cut(s) 204
AfiI CCNNNNNNNGG 4 cut(s) 110, 355, 503, 523
AgsI TTSAA 2 cut(s) 197, 328
AhdI GACNNNNNGTC 1 cut(s) 489
AjnI CCWGG 1 cut(s) 26
AluBI AGCT 5 cut(s) 9, 35, 110, 471, 555
AluI AGCT 5 cut(s) 9, 35, 110, 471, 555
AlwI GGATC 2 cut(s) 348, 533
AoxI GGCC 3 cut(s) 215, 357, 546
ApeKI GCWGC 1 cut(s) 137
ApoI RAATTY 2 cut(s) 267, 455
ArsI GACNNNNNNTTYG 2 cut(s) 114, 146
AspS9I GGNCC 1 cut(s) 215
AsuC2I CCSGG 1 cut(s) 376
AsuHPI GGTGA 1 cut(s) 424
BaeGI GKGCMC 1 cut(s) 431
BanII GRGCYC 1 cut(s) 531
BbvI GCAGC 1 cut(s) 124
BceAI ACGGC 1 cut(s) 346
BciT130I CCWGG 1 cut(s) 28
BcnI CCSGG 1 cut(s) 376
BfaI CTAG 3 cut(s) 164, 272, 623
BisI GCNGC 1 cut(s) 138
BlsI GCNGC 1 cut(s) 139
Bme1390I CCNGG 2 cut(s) 28, 376
BmeRI GACNNNNNGTC 1 cut(s) 489
BmgT120I GGNCC 1 cut(s) 215
BmiI GGNNCC 1 cut(s) 528
BmrFI CCNGG 2 cut(s) 28, 376
BmsI GCATC 1 cut(s) 197
BpmI CTGGAG 1 cut(s) 535
BpuEI CTTGAG 1 cut(s) 584
BpuMI CCSGG 1 cut(s) 376
BsaAI YACGTR 1 cut(s) 409
BsaJI CCNNGG 2 cut(s) 391, 543
BsaWI WCCGGW 1 cut(s) 464
Bsc4I CCNNNNNNNGG 4 cut(s) 110, 355, 503, 523
BseBI CCWGG 1 cut(s) 28
BseDI CCNNGG 2 cut(s) 391, 543
BseLI CCNNNNNNNGG 4 cut(s) 110, 355, 503, 523
BseSI GKGCMC 1 cut(s) 431
BseXI GCAGC 1 cut(s) 124
BshFI GGCC 3 cut(s) 217, 359, 548
BsiSI CCGG 2 cut(s) 376, 465
BslFI GGGAC 1 cut(s) 94
BslI CCNNNNNNNGG 4 cut(s) 110, 355, 503, 523
BsmFI GGGAC 1 cut(s) 94
BsnI GGCC 3 cut(s) 217, 359, 548
Bsp1286I GDGCHC 2 cut(s) 431, 531
Bsp143I GATC 2 cut(s) 340, 538
BspANI GGCC 3 cut(s) 217, 359, 548
BspLI GGNNCC 1 cut(s) 528
BspPI GGATC 2 cut(s) 348, 533
BssECI CCNNGG 2 cut(s) 391, 543
BssMI GATC 2 cut(s) 340, 538
BssT1I CCWWGG 1 cut(s) 391
Bst2UI CCWGG 1 cut(s) 28
Bst4CI ACNGT 1 cut(s) 418
Bst6I CTCTTC 2 cut(s) 75, 83
BstAPI GCANNNNNTGC 1 cut(s) 588
BstBAI YACGTR 1 cut(s) 409
BstC8I GCNNGC 2 cut(s) 400, 505
BstDEI CTNAG 1 cut(s) 344
BstEII GGTNACC 1 cut(s) 113
BstKTI GATC 2 cut(s) 343, 541
BstMBI GATC 2 cut(s) 340, 538
BstMWI GCNNNNNNNGC 1 cut(s) 588
BstNI CCWGG 1 cut(s) 28
BstPI GGTNACC 1 cut(s) 113
BstSCI CCNGG 2 cut(s) 26, 374
BstSLI GKGCMC 1 cut(s) 431
BstV1I GCAGC 1 cut(s) 124
BstX2I RGATCY 1 cut(s) 340
BstYI RGATCY 1 cut(s) 340
BsuRI GGCC 3 cut(s) 217, 359, 548
BtgZI GCGATG 1 cut(s) 191
Cac8I GCNNGC 2 cut(s) 400, 505
Cfr13I GGNCC 1 cut(s) 215
CseI GACGC 1 cut(s) 580
CsiI ACCWGGT 1 cut(s) 26
Csp6I GTAC 1 cut(s) 203
CviAII CATG 4 cut(s) 74, 212, 219, 630
CviQI GTAC 1 cut(s) 203
DdeI CTNAG 1 cut(s) 344
DpnI GATC 2 cut(s) 342, 540
DpnII GATC 2 cut(s) 340, 538
DriI GACNNNNNGTC 1 cut(s) 489
Eam1104I CTCTTC 2 cut(s) 75, 83
Eam1105I GACNNNNNGTC 1 cut(s) 489
EarI CTCTTC 2 cut(s) 75, 83
Eco130I CCWWGG 1 cut(s) 391
Eco24I GRGCYC 1 cut(s) 531
Eco91I GGTNACC 1 cut(s) 113
EcoO65I GGTNACC 1 cut(s) 113
EcoRII CCWGG 1 cut(s) 26
EcoT14I CCWWGG 1 cut(s) 391
EcoT38I GRGCYC 1 cut(s) 531
ErhI CCWWGG 1 cut(s) 391
FaeI CATG 4 cut(s) 77, 215, 222, 633
FaiI YATR 7 cut(s) 41, 75, 213, 220, 559, 561, 631
FaqI GGGAC 1 cut(s) 94
FatI CATG 4 cut(s) 73, 211, 218, 629
Fnu4HI GCNGC 1 cut(s) 138
FriOI GRGCYC 1 cut(s) 531
Fsp4HI GCNGC 1 cut(s) 138
FspBI CTAG 3 cut(s) 164, 272, 623
GluI GCNGC 1 cut(s) 138
GsuI CTGGAG 1 cut(s) 535
HaeIII GGCC 3 cut(s) 217, 359, 548
HapII CCGG 2 cut(s) 376, 465
HgaI GACGC 1 cut(s) 580
Hin1II CATG 4 cut(s) 77, 215, 222, 633
HincII GTYRAC 2 cut(s) 295, 494
HindII GTYRAC 2 cut(s) 295, 494
HinfI GANTC 4 cut(s) 97, 256, 291, 484
HpaII CCGG 2 cut(s) 376, 465
HphI GGTGA 1 cut(s) 424
Hpy166II GTNNAC 4 cut(s) 101, 205, 295, 494
Hpy188III TCNNGA 4 cut(s) 194, 272, 370, 601
Hpy8I GTNNAC 4 cut(s) 101, 205, 295, 494
HpyAV CCTTC 2 cut(s) 72, 178
HpyCH4III ACNGT 1 cut(s) 418
HpyCH4IV ACGT 1 cut(s) 408
HpyCH4V TGCA 2 cut(s) 15, 398
HpyF10VI GCNNNNNNNGC 1 cut(s) 588
HpyF3I CTNAG 1 cut(s) 344
HpySE526I ACGT 1 cut(s) 408
Hsp92II CATG 4 cut(s) 77, 215, 222, 633
Kzo9I GATC 2 cut(s) 340, 538
LmnI GCTCC 3 cut(s) 40, 173, 526
Lsp1109I GCAGC 1 cut(s) 124
LweI GCATC 1 cut(s) 197
MabI ACCWGGT 1 cut(s) 26
MaeI CTAG 3 cut(s) 164, 272, 623
MaeII ACGT 1 cut(s) 408
MaeIII GTNAC 3 cut(s) 113, 143, 412
MalI GATC 2 cut(s) 342, 540
MboI GATC 2 cut(s) 340, 538
MboII GAAGA 2 cut(s) 62, 100
MflI RGATCY 1 cut(s) 340
MhlI GDGCHC 2 cut(s) 431, 531
MluCI AATT 3 cut(s) 267, 323, 455
MlyI GAGTC 3 cut(s) 106, 300, 478
MmeI TCCRAC 1 cut(s) 619
MnlI CCTC 8 cut(s) 84, 128, 174, 243, 331, 377, 553, 559
MslI CAYNNNNRTG 1 cut(s) 210
MspI CCGG 2 cut(s) 376, 465
MspR9I CCNGG 2 cut(s) 28, 376
MvaI CCWGG 1 cut(s) 28
MwoI GCNNNNNNNGC 1 cut(s) 588
NciI CCSGG 1 cut(s) 376
NdeII GATC 2 cut(s) 340, 538
NlaIII CATG 4 cut(s) 77, 215, 222, 633
NlaIV GGNNCC 1 cut(s) 528
NmeAIII GCCGAG 1 cut(s) 524
NmuCI GTSAC 2 cut(s) 143, 412
PfeI GAWTC 1 cut(s) 256
PflFI GACNNNGTC 1 cut(s) 590
PflMI CCANNNNNTGG 1 cut(s) 110
PkrI GCNGC 1 cut(s) 139
PleI GAGTC 3 cut(s) 105, 299, 478
PpsI GAGTC 3 cut(s) 105, 299, 478
Ppu21I YACGTR 1 cut(s) 409
Psp6I CCWGG 1 cut(s) 26
PspEI GGTNACC 1 cut(s) 113
PspGI CCWGG 1 cut(s) 26
PspN4I GGNNCC 1 cut(s) 528
PspPI GGNCC 1 cut(s) 215
PsuI RGATCY 1 cut(s) 340
PsyI GACNNNGTC 1 cut(s) 590
RsaI GTAC 1 cut(s) 204
RsaNI GTAC 1 cut(s) 203
RseI CAYNNNNRTG 1 cut(s) 210
SatI GCNGC 1 cut(s) 138
Sau3AI GATC 2 cut(s) 340, 538
Sau96I GGNCC 1 cut(s) 215
SchI GAGTC 3 cut(s) 106, 300, 478
ScrFI CCNGG 2 cut(s) 28, 376
SduI GDGCHC 2 cut(s) 431, 531
SexAI ACCWGGT 1 cut(s) 26
SfaNI GCATC 1 cut(s) 197
SmiMI CAYNNNNRTG 1 cut(s) 210
SmlI CTYRAG 1 cut(s) 599
SmoI CTYRAG 1 cut(s) 599
Sse9I AATT 3 cut(s) 267, 323, 455
SspMI CTAG 3 cut(s) 164, 272, 623
StyD4I CCNGG 2 cut(s) 26, 374
StyI CCWWGG 1 cut(s) 391
TaaI ACNGT 1 cut(s) 418
TaiI ACGT 1 cut(s) 411
TaqI TCGA 3 cut(s) 20, 453, 537
TasI AATT 3 cut(s) 267, 323, 455
TfiI GAWTC 1 cut(s) 256
TseFI GTSAC 2 cut(s) 143, 412
TseI GCWGC 1 cut(s) 137
Tsp45I GTSAC 2 cut(s) 143, 412
TspDTI ATGAA 2 cut(s) 54, 62
TspGWI ACGGA 1 cut(s) 599
Tth111I GACNNNGTC 1 cut(s) 590
Van91I CCANNNNNTGG 1 cut(s) 110
XapI RAATTY 2 cut(s) 267, 455
XbaI TCTAGA 1 cut(s) 271
XspI CTAG 3 cut(s) 164, 272, 623
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.