Rh4CG120500

Belongs to the peptidase A1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0017644
Physical Location & Seq
Forward (+)
23078400 .. 23090784
12385 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG120500.1

Sequence Viewer

Length: 1209 bp
ATGGAGAAGAAGAAGAGTAGAGTACTGATAATCAGAGCAACAGGAAATCTGGGTCACCATTTAGCCAATGCCAGCCTCCATTTCTCTCACCCCACTTTCGCTCTCGTCCGACCCGACACCTTCTCCGACCCCCACAAGTCCCAAAACCTTCGAGCCCTCTCCGATGCCGGCGTCACACTCCTCCAAGGTTCGCTGGAAGACGAAGAGAACCTTGTTGGAGCAGTGAAGCAAGTTGATGTTGTGATTTGTGCTGTTCAGGTCAAACAGGTTAGGGATTTGGGGAAACCTAATTGGGTTGTACAATTTGTGCGTAAGGTTGAACAAGTCACGGCCACGAAACTAATCAAGGTATCCGATATTGGGTTATCAATTGAGATAAGAATGCTTAGGGAAGAACTACAGCTTCTGCAAGAGCCTACACAAAGGAAACGTAGTTTGAAGCCGCCGCATCAAAAGGTTAAAGTTTCTTCACTTCCTGTGTTACCCTACGATGATGCAGATAAATTTTATCAGGTCCCTGATTACTGGAAAACATATGTGCATGAGGTTGATGAGGAAAGGGAAATGTGGTTGAACTCCTTCTATAAAGCTCCACTGAGAATACCTATGCCTTCTGAGCTTGAGTACTGGTGGTCAAAGGGCTTTGCCTTGGCAGAAGCAGATTCAAAAGAACAACTTGTTGAATTCACCCACACAGTTGATCCCCGCTCTCTACTGCCAGCAACGACCTGCAGCTCCTCCACCAAAGGTAATAAGAGGAAGGCATCTCTTGAAGTGGTACACAAGCATGGGCCATGCTCTCATCTCCCTCAACACCAAGCGACTGCTACGAATCACACTCAAATTCTAGAGCAAGACCAAGTGCGAGTCAACTCAATCAACTCCCAGATTTCCAAGAAATTGAACAGCAATGAGGATCTAAGCCAATCAAAGGCCACCACCCTCCCGACCCGGTGGGCTACGAGCCAAGGTGCAAGCAACTACGTGGTGACTGTGGGATTGGGTACACCTAACAAACAACTTTCGCTCGAATTTGACACTGGAAGTTATCTCACTTGGACTCAATGTCAACCTTGTGCTGGCTCTTGCTACCCACAAAAGGAGCCCATTTTCGATCCCTCGGCCTCCAACTCATATACCAACATTTCCTGTAATAGCACGGACTGCGTCCAACTCAAGACAACTACGAGTAAATACCTAGAACCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04071 ko04140 ko04142 ko04210 ko04915 ko05152 map04071 map04140 map04142 map04210 map04915 map05152
Pfam Domains
Protein Families
TAXi_C TAXi_N

Protein Analysis

402

Amino Acids

45.14

Weight (kDa)

8.3

Isoelectric Point (pI)

38.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NmrA PF05368 4 - 90 2.1e-18 NmrA-like family
NAD_binding_10 PF13460 13 - 125 5.4e-09 NAD(P)H-binding
Asp PF00026 327 - 381 5.6e-07 Eukaryotic aspartyl protease
TAXi_N PF14543 328 - 393 3.3e-19 Xylanase inhibitor N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017644)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g08261
malus_domestica MD15G1044300.v1.1
pyrus_communis pycom15g04120
rosa_laevigata RLG00000009074 RLG00000009077
rosa_samantha Rh4AG113400 Rh4AG113700 Rh4AG113900 Rh4BG106100 Rh4CG120500 Rh4DG105400 Rh6CG035400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 737
AccBSI CCGCTC 1 cut(s) 708
AciI CCGC 3 cut(s) 443, 446, 706
AclWI GGATC 3 cut(s) 695, 924, 1109
AcoI YGGCCR 1 cut(s) 330
AcsI RAATTY 4 cut(s) 503, 683, 843, 1031
AcyI GRCGYC 1 cut(s) 171
AfaI GTAC 5 cut(s) 24, 300, 626, 780, 1006
AfiI CCNNNNNNNGG 4 cut(s) 360, 931, 1079, 1099
AgsI TTSAA 7 cut(s) 320, 439, 574, 666, 683, 773, 904
AhdI GACNNNNNGTC 1 cut(s) 1065
AluBI AGCT 4 cut(s) 403, 590, 619, 735
AluI AGCT 4 cut(s) 403, 590, 619, 735
AlwI GGATC 3 cut(s) 695, 924, 1109
AlwNI CAGNNNCTG 1 cut(s) 406
AoxI GGCC 4 cut(s) 330, 791, 933, 1122
ApeKI GCWGC 1 cut(s) 732
ApoI RAATTY 4 cut(s) 503, 683, 843, 1031
Asp700I GAANNNNTTC 1 cut(s) 578
AspS9I GGNCC 2 cut(s) 514, 791
AsuC2I CCSGG 1 cut(s) 952
AsuHPI GGTGA 4 cut(s) 47, 80, 679, 1000
AvaII GGWCC 1 cut(s) 514
BanII GRGCYC 2 cut(s) 157, 1107
BbsI GAAGAC 1 cut(s) 204
BbvI GCAGC 1 cut(s) 744
BceAI ACGGC 1 cut(s) 345
BciVI GTATCC 1 cut(s) 361
BcnI CCSGG 1 cut(s) 952
BfaI CTAG 2 cut(s) 848, 1199
BfmI CTRYAG 2 cut(s) 398, 730
BfuAI ACCTGC 1 cut(s) 737
BfuI GTATCC 1 cut(s) 361
BisI GCNGC 3 cut(s) 443, 446, 733
BlsI GCNGC 3 cut(s) 444, 447, 734
BmcAI AGTACT 2 cut(s) 24, 626
Bme1390I CCNGG 1 cut(s) 952
Bme18I GGWCC 1 cut(s) 514
BmeRI GACNNNNNGTC 1 cut(s) 1065
BmgT120I GGNCC 2 cut(s) 514, 791
BmiI GGNNCC 2 cut(s) 516, 1104
BmrFI CCNGG 1 cut(s) 952
BmsI GCATC 4 cut(s) 154, 457, 484, 773
BpiI GAAGAC 1 cut(s) 204
Bpu10I CCTNAGC 1 cut(s) 386
BpuEI CTTGAG 2 cut(s) 641, 1160
BpuMI CCSGG 1 cut(s) 952
BsaAI YACGTR 1 cut(s) 985
BsaHI GRCGYC 1 cut(s) 171
BsaJI CCNNGG 4 cut(s) 184, 648, 967, 1119
BsaXI ACNNNNNCTCC 2 cut(s) 107, 137
Bsc4I CCNNNNNNNGG 4 cut(s) 360, 931, 1079, 1099
Bse118I RCCGGY 1 cut(s) 167
Bse1I ACTGG 3 cut(s) 530, 632, 1045
Bse3DI GCAATG 1 cut(s) 916
BseDI CCNNGG 4 cut(s) 184, 648, 967, 1119
BseLI CCNNNNNNNGG 4 cut(s) 360, 931, 1079, 1099
BseMI GCAATG 1 cut(s) 916
BseMII CTCAG 2 cut(s) 587, 606
BseNI ACTGG 3 cut(s) 530, 632, 1045
BseRI GAGGAG 2 cut(s) 170, 727
BseXI GCAGC 1 cut(s) 744
BshFI GGCC 4 cut(s) 332, 793, 935, 1124
BsiSI CCGG 2 cut(s) 168, 952
BslFI GGGAC 2 cut(s) 124, 500
BslI CCNNNNNNNGG 4 cut(s) 360, 931, 1079, 1099
BsmFI GGGAC 2 cut(s) 124, 500
BsmI GAATGC 1 cut(s) 387
BsnI GGCC 4 cut(s) 332, 793, 935, 1124
Bsp1286I GDGCHC 2 cut(s) 157, 1107
Bsp1407I TGTACA 1 cut(s) 298
Bsp143I GATC 3 cut(s) 700, 916, 1114
BspACI CCGC 3 cut(s) 443, 446, 706
BspANI GGCC 4 cut(s) 332, 793, 935, 1124
BspCNI CTCAG 2 cut(s) 588, 607
BspLI GGNNCC 2 cut(s) 516, 1104
BspMAI CTGCAG 1 cut(s) 734
BspMI ACCTGC 1 cut(s) 737
BspPI GGATC 3 cut(s) 695, 924, 1109
BsrBI CCGCTC 1 cut(s) 708
BsrDI GCAATG 1 cut(s) 916
BsrFI RCCGGY 1 cut(s) 167
BsrGI TGTACA 1 cut(s) 298
BsrI ACTGG 3 cut(s) 530, 632, 1045
BssAI RCCGGY 1 cut(s) 167
BssECI CCNNGG 4 cut(s) 184, 648, 967, 1119
BssMI GATC 3 cut(s) 700, 916, 1114
BssNI GRCGYC 1 cut(s) 171
BssT1I CCWWGG 3 cut(s) 184, 648, 967
Bst4CI ACNGT 2 cut(s) 697, 994
Bst6I CTCTTC 2 cut(s) 8, 198
BstACI GRCGYC 1 cut(s) 171
BstAPI GCANNNNNTGC 1 cut(s) 1164
BstAUI TGTACA 1 cut(s) 298
BstBAI YACGTR 1 cut(s) 985
BstC8I GCNNGC 5 cut(s) 73, 169, 720, 976, 1081
BstDEI CTNAG 4 cut(s) 386, 596, 615, 920
BstEII GGTNACC 1 cut(s) 53
BstKTI GATC 3 cut(s) 703, 919, 1117
BstMBI GATC 3 cut(s) 700, 916, 1114
BstMWI GCNNNNNNNGC 2 cut(s) 616, 1164
BstPI GGTNACC 1 cut(s) 53
BstSCI CCNGG 1 cut(s) 950
BstSFI CTRYAG 2 cut(s) 398, 730
BstV1I GCAGC 1 cut(s) 744
BstV2I GAAGAC 1 cut(s) 204
BstX2I RGATCY 1 cut(s) 916
BstYI RGATCY 1 cut(s) 916
BsuI GTATCC 1 cut(s) 361
BsuRI GGCC 4 cut(s) 332, 793, 935, 1124
BtsI GCAGTG 1 cut(s) 228
BtsIMutI CAGTG 3 cut(s) 228, 593, 1038
BveI ACCTGC 1 cut(s) 737
Cac8I GCNNGC 5 cut(s) 73, 169, 720, 976, 1081
CaiI CAGNNNCTG 1 cut(s) 406
Cfr10I RCCGGY 1 cut(s) 167
Cfr13I GGNCC 2 cut(s) 514, 791
CseI GACGC 2 cut(s) 160, 1156
Csp6I GTAC 5 cut(s) 23, 299, 625, 779, 1005
CviAII CATG 4 cut(s) 542, 788, 795, 1206
CviQI GTAC 5 cut(s) 23, 299, 625, 779, 1005
DdeI CTNAG 4 cut(s) 386, 596, 615, 920
DpnI GATC 3 cut(s) 702, 918, 1116
DpnII GATC 3 cut(s) 700, 916, 1114
DriI GACNNNNNGTC 1 cut(s) 1065
EaeI YGGCCR 1 cut(s) 330
Eam1104I CTCTTC 2 cut(s) 8, 198
Eam1105I GACNNNNNGTC 1 cut(s) 1065
EarI CTCTTC 2 cut(s) 8, 198
Eco130I CCWWGG 3 cut(s) 184, 648, 967
Eco24I GRGCYC 2 cut(s) 157, 1107
Eco47I GGWCC 1 cut(s) 514
Eco91I GGTNACC 1 cut(s) 53
EcoO109I RGGNCCY 1 cut(s) 514
EcoO65I GGTNACC 1 cut(s) 53
EcoRI GAATTC 1 cut(s) 683
EcoT14I CCWWGG 3 cut(s) 184, 648, 967
EcoT38I GRGCYC 2 cut(s) 157, 1107
ErhI CCWWGG 3 cut(s) 184, 648, 967
FaeI CATG 4 cut(s) 545, 791, 798, 1209
FalI AAGNNNNNCTT 4 cut(s) 195, 227, 660, 692
FaqI GGGAC 2 cut(s) 124, 500
FatI CATG 4 cut(s) 541, 787, 794, 1205
FauI CCCGC 1 cut(s) 713
FauNDI CATATG 1 cut(s) 535
Fnu4HI GCNGC 3 cut(s) 443, 446, 733
FriOI GRGCYC 2 cut(s) 157, 1107
Fsp4HI GCNGC 3 cut(s) 443, 446, 733
FspBI CTAG 2 cut(s) 848, 1199
GluI GCNGC 3 cut(s) 443, 446, 733
HaeIII GGCC 4 cut(s) 332, 793, 935, 1124
HapII CCGG 2 cut(s) 168, 952
HgaI GACGC 2 cut(s) 160, 1156
Hin1I GRCGYC 1 cut(s) 171
Hin1II CATG 4 cut(s) 545, 791, 798, 1209
HincII GTYRAC 2 cut(s) 871, 1070
HindII GTYRAC 2 cut(s) 871, 1070
HinfI GANTC 4 cut(s) 662, 832, 867, 1060
HpaII CCGG 2 cut(s) 168, 952
HphI GGTGA 4 cut(s) 47, 80, 679, 1000
Hpy166II GTNNAC 4 cut(s) 781, 871, 1007, 1070
Hpy188I TCNGA 6 cut(s) 35, 110, 127, 163, 355, 616
Hpy188III TCNNGA 4 cut(s) 770, 848, 946, 1177
Hpy8I GTNNAC 4 cut(s) 781, 871, 1007, 1070
HpyAV CCTTC 5 cut(s) 130, 158, 589, 621, 754
HpyCH4III ACNGT 2 cut(s) 697, 994
HpyCH4IV ACGT 2 cut(s) 430, 984
HpyCH4V TGCA 5 cut(s) 409, 497, 541, 732, 974
HpyF10VI GCNNNNNNNGC 2 cut(s) 616, 1164
HpyF3I CTNAG 4 cut(s) 386, 596, 615, 920
HpySE526I ACGT 2 cut(s) 430, 984
Hsp92I GRCGYC 1 cut(s) 171
Hsp92II CATG 4 cut(s) 545, 791, 798, 1209
KroI GCCGGC 1 cut(s) 167
KroNI GCCGGC 1 cut(s) 169
Kzo9I GATC 3 cut(s) 700, 916, 1114
LmnI GCTCC 4 cut(s) 218, 595, 740, 1102
Lsp1109I GCAGC 1 cut(s) 744
LweI GCATC 4 cut(s) 154, 457, 484, 773
MaeI CTAG 2 cut(s) 848, 1199
MaeII ACGT 2 cut(s) 430, 984
MaeIII GTNAC 5 cut(s) 53, 172, 325, 480, 988
MalI GATC 3 cut(s) 702, 918, 1116
MbiI CCGCTC 1 cut(s) 708
MboI GATC 3 cut(s) 700, 916, 1114
MboII GAAGA 7 cut(s) 19, 22, 25, 209, 215, 404, 459
MfeI CAATTG 1 cut(s) 369
MflI RGATCY 1 cut(s) 916
MhlI GDGCHC 2 cut(s) 157, 1107
MluCI AATT 8 cut(s) 289, 302, 369, 503, 683, 843, 899, 1031
MlyI GAGTC 2 cut(s) 876, 1054
MmeI TCCRAC 5 cut(s) 133, 150, 196, 1152, 1195
MroNI GCCGGC 1 cut(s) 167
MroXI GAANNNNTTC 1 cut(s) 578
MseI TTAA 1 cut(s) 459
MslI CAYNNNNRTG 1 cut(s) 786
MspI CCGG 2 cut(s) 168, 952
MspR9I CCNGG 1 cut(s) 952
MunI CAATTG 1 cut(s) 369
Mva1269I GAATGC 1 cut(s) 387
MwoI GCNNNNNNNGC 2 cut(s) 616, 1164
NaeI GCCGGC 1 cut(s) 169
NciI CCSGG 1 cut(s) 952
NdeI CATATG 1 cut(s) 535
NdeII GATC 3 cut(s) 700, 916, 1114
NgoMIV GCCGGC 1 cut(s) 167
NlaIII CATG 4 cut(s) 545, 791, 798, 1209
NlaIV GGNNCC 2 cut(s) 516, 1104
NmeAIII GCCGAG 1 cut(s) 1100
NmuCI GTSAC 4 cut(s) 53, 172, 325, 988
PcsI WCGNNNNNNNCGW 1 cut(s) 111
PctI GAATGC 1 cut(s) 387
PdiI GCCGGC 1 cut(s) 169
PdmI GAANNNNTTC 1 cut(s) 578
PfeI GAWTC 2 cut(s) 662, 832
PflFI GACNNNGTC 1 cut(s) 1166
PkrI GCNGC 3 cut(s) 444, 447, 734
PleI GAGTC 2 cut(s) 875, 1054
PpsI GAGTC 2 cut(s) 875, 1054
Ppu21I YACGTR 1 cut(s) 985
PpuMI RGGWCCY 1 cut(s) 514
Psp5II RGGWCCY 1 cut(s) 514
PspEI GGTNACC 1 cut(s) 53
PspN4I GGNNCC 2 cut(s) 516, 1104
PspPI GGNCC 2 cut(s) 514, 791
PspPPI RGGWCCY 1 cut(s) 514
PstI CTGCAG 1 cut(s) 734
PstNI CAGNNNCTG 1 cut(s) 406
PsuI RGATCY 1 cut(s) 916
PsyI GACNNNGTC 1 cut(s) 1166
RsaI GTAC 5 cut(s) 24, 300, 626, 780, 1006
RsaNI GTAC 5 cut(s) 23, 299, 625, 779, 1005
RseI CAYNNNNRTG 1 cut(s) 786
SaqAI TTAA 1 cut(s) 459
SatI GCNGC 3 cut(s) 443, 446, 733
Sau3AI GATC 3 cut(s) 700, 916, 1114
Sau96I GGNCC 2 cut(s) 514, 791
ScaI AGTACT 2 cut(s) 24, 626
SchI GAGTC 2 cut(s) 876, 1054
ScrFI CCNGG 1 cut(s) 952
SduI GDGCHC 2 cut(s) 157, 1107
SfaNI GCATC 4 cut(s) 154, 457, 484, 773
SfcI CTRYAG 2 cut(s) 398, 730
SinI GGWCC 1 cut(s) 514
SmiMI CAYNNNNRTG 1 cut(s) 786
SmlI CTYRAG 2 cut(s) 620, 1175
SmoI CTYRAG 2 cut(s) 620, 1175
Sse9I AATT 8 cut(s) 289, 302, 369, 503, 683, 843, 899, 1031
SsiI CCGC 3 cut(s) 443, 446, 706
SspMI CTAG 2 cut(s) 848, 1199
StyD4I CCNGG 1 cut(s) 950
StyI CCWWGG 3 cut(s) 184, 648, 967
TaaI ACNGT 2 cut(s) 697, 994
TaiI ACGT 2 cut(s) 433, 987
TaqI TCGA 3 cut(s) 151, 1029, 1113
TasI AATT 8 cut(s) 289, 302, 369, 503, 683, 843, 899, 1031
TatI WGTACW 3 cut(s) 22, 298, 624
TauI GCSGC 2 cut(s) 445, 448
TfiI GAWTC 2 cut(s) 662, 832
Tru1I TTAA 1 cut(s) 459
Tru9I TTAA 1 cut(s) 459
TscAI CASTG 3 cut(s) 228, 600, 1045
TseFI GTSAC 4 cut(s) 53, 172, 325, 988
TseI GCWGC 1 cut(s) 732
Tsp45I GTSAC 4 cut(s) 53, 172, 325, 988
TspGWI ACGGA 1 cut(s) 1175
TspRI CASTG 3 cut(s) 228, 600, 1045
Tth111I GACNNNGTC 1 cut(s) 1166
VpaK11BI GGWCC 1 cut(s) 514
XapI RAATTY 4 cut(s) 503, 683, 843, 1031
XbaI TCTAGA 1 cut(s) 847
XmnI GAANNNNTTC 1 cut(s) 578
XspI CTAG 2 cut(s) 848, 1199
ZrmI AGTACT 2 cut(s) 24, 626
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.