RLG00000009074

Belongs to the peptidase A1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0017644
Physical Location & Seq
Reverse (-)
46085615 .. 46086758
1144 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000009074

Sequence Viewer

Length: 960 bp
ATGGCAACTCCCTTCAGTTCTACCTCCTCCACCTTCCTCATGATGAGGAATTTCATCAGTTTGTCCGTACTTCTTAGCCTGAATATGTGGTCTTTAGACAGGGGCTTTGCCTTCGCAGAAGGAAATTCAAAAAGACACCTCCTTCATCAACAATATACCCACACAGTTGATCTCCACTCTTTGCTGCCAGCAACAATCTGCAGCCCCTCTCATCAGAAAAGGAAGGCAACTCTTGAAGTGGTACACAAGCATGGGCCATGCTCTCATCTTCCTCAAAACAAAGGTCTTGCAACGAATCACACTCAAATTCTGGAGCAAGACCAAGAGCGAGTCAACTCAATCAACTCCCGGACTTCCAAGAAACTGAACGGCGTTGAGGATCTAAGCCAATCTGAGGCCACCGCATTCCCGTCCTGGAGGGTCAGTGGCCAAGGTGCTGGCAACTACATAGTAACGGCGGAATTAGGCACACCTACAAAACAACTTTCGCTCGAATTTGACATCGGAAGCTACTTCACTTGGACTCAATGTCAACCTTGTGCTGGCTATTGCTACCAACAAAATGATCCCATTTTTGATCTCGCCTCCTCCACCTCGTATGCCATTGTTTCTTGTAATAACGTAGAGTGTGTCGAACTCAGCACATTTACAAAATACAACTCTTGCTTACGAGAGACATGCAAATACCACATGGTGTACTCAGATGAGTACCAAAACTCGTACACCATTAGACTTTTGGCCAAGGACAAGATGACTTTAACTTCAAACGATGTGTTTGAGGGATTCTTCTTTGGCTGTGGTGAAGAAAATGTACGCATTATTGGCCACTCAGCCGGTTTACTTGGTCTCTCCCGCAACAAGTTCTCTATAGTCGAACAAACAGCGCAGAAGTACGACCACTTCTTCTCCTACTGTTTACCACCGACAGCAAGCTCCACTAGTTACCTCAGCTTCGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04071 ko04140 ko04142 ko04210 ko04915 ko05152 map04071 map04140 map04142 map04210 map04915 map05152
Pfam Domains
Protein Families
TAXi_C TAXi_N

Protein Analysis

320

Amino Acids

35.72

Weight (kDa)

6.62

Isoelectric Point (pI)

35.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAXi_N PF14543 149 - 319 2.6e-42 Xylanase inhibitor N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017644)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g08261
malus_domestica MD15G1044300.v1.1
pyrus_communis pycom15g04120
rosa_laevigata RLG00000009074 RLG00000009077
rosa_samantha Rh4AG113400 Rh4AG113700 Rh4AG113900 Rh4BG106100 Rh4CG120500 Rh4DG105400 Rh6CG035400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 402, 458, 853
AclWI GGATC 2 cut(s) 387, 560
AcoI YGGCCR 3 cut(s) 427, 738, 823
AcsI RAATTY 4 cut(s) 49, 124, 306, 494
AdeI CACNNNGTG 1 cut(s) 694
AfaI GTAC 7 cut(s) 69, 243, 698, 710, 722, 813, 893
AfiI CCNNNNNNNGG 2 cut(s) 394, 542
AgsI TTSAA 3 cut(s) 129, 236, 765
AhdI GACNNNNNGTC 1 cut(s) 528
AhlI ACTAGT 1 cut(s) 938
AjnI CCWGG 1 cut(s) 413
AluBI AGCT 3 cut(s) 510, 933, 951
AluI AGCT 3 cut(s) 510, 933, 951
Alw26I GTCTC 2 cut(s) 668, 851
AlwI GGATC 2 cut(s) 387, 560
AoxI GGCC 5 cut(s) 254, 396, 427, 738, 823
ApeKI GCWGC 2 cut(s) 184, 201
ApoI RAATTY 4 cut(s) 49, 124, 306, 494
ArsI GACNNNNNNTTYG 4 cut(s) 89, 121, 268, 300
AspLEI GCGC 1 cut(s) 886
AspS9I GGNCC 1 cut(s) 254
AsuC2I CCSGG 1 cut(s) 349
AsuHPI GGTGA 1 cut(s) 812
BalI TGGCCA 3 cut(s) 429, 740, 825
BarI GAAGNNNNNNTAC 4 cut(s) 795, 827, 884, 916
BbvCI CCTCAGC 1 cut(s) 947
BbvI GCAGC 2 cut(s) 171, 213
BceAI ACGGC 2 cut(s) 385, 471
BcgI CGANNNNNNTGC 2 cut(s) 660, 694
BciT130I CCWGG 1 cut(s) 415
BcnI CCSGG 1 cut(s) 349
BcoDI GTCTC 2 cut(s) 668, 851
BcuI ACTAGT 1 cut(s) 938
BfaI CTAG 1 cut(s) 939
BfmI CTRYAG 2 cut(s) 199, 867
BisI GCNGC 2 cut(s) 185, 202
BlsI GCNGC 2 cut(s) 186, 203
Bme1390I CCNGG 2 cut(s) 349, 415
BmeRI GACNNNNNGTC 1 cut(s) 528
BmgT120I GGNCC 1 cut(s) 254
BmrFI CCNGG 2 cut(s) 349, 415
BpmI CTGGAG 2 cut(s) 332, 436
Bpu10I CCTNAGC 1 cut(s) 947
BpuMI CCSGG 1 cut(s) 349
BsaI GGTCTC 1 cut(s) 851
BsaJI CCNNGG 2 cut(s) 430, 741
BsaXI ACNNNNNCTCC 4 cut(s) 409, 439, 890, 920
Bsc4I CCNNNNNNNGG 2 cut(s) 394, 542
Bse118I RCCGGY 1 cut(s) 833
BseBI CCWGG 1 cut(s) 415
BseDI CCNNGG 2 cut(s) 430, 741
BseLI CCNNNNNNNGG 2 cut(s) 394, 542
BseMII CTCAG 4 cut(s) 384, 652, 714, 843
BseRI GAGGAG 2 cut(s) 16, 577
BseXI GCAGC 2 cut(s) 171, 213
BshFI GGCC 5 cut(s) 256, 398, 429, 740, 825
BsiSI CCGG 2 cut(s) 349, 834
BslI CCNNNNNNNGG 2 cut(s) 394, 542
BsmAI GTCTC 2 cut(s) 668, 851
BsmI GAATGC 1 cut(s) 404
BsnI GGCC 5 cut(s) 256, 398, 429, 740, 825
Bso31I GGTCTC 1 cut(s) 851
Bsp143I GATC 4 cut(s) 169, 379, 565, 577
BspACI CCGC 3 cut(s) 402, 458, 853
BspANI GGCC 5 cut(s) 256, 398, 429, 740, 825
BspCNI CTCAG 5 cut(s) 385, 651, 713, 842, 960
BspHI TCATGA 1 cut(s) 39
BspMAI CTGCAG 1 cut(s) 203
BspPI GGATC 2 cut(s) 387, 560
BspTNI GGTCTC 1 cut(s) 851
BsrFI RCCGGY 1 cut(s) 833
BssAI RCCGGY 1 cut(s) 833
BssECI CCNNGG 2 cut(s) 430, 741
BssMI GATC 4 cut(s) 169, 379, 565, 577
BssT1I CCWWGG 2 cut(s) 430, 741
Bst2UI CCWGG 1 cut(s) 415
Bst4CI ACNGT 2 cut(s) 166, 914
BstC8I GCNNGC 4 cut(s) 189, 439, 544, 931
BstDEI CTNAG 7 cut(s) 74, 383, 393, 638, 700, 829, 947
BstHHI GCGC 1 cut(s) 886
BstKTI GATC 4 cut(s) 172, 382, 568, 580
BstMAI GTCTC 2 cut(s) 668, 851
BstMBI GATC 4 cut(s) 169, 379, 565, 577
BstMWI GCNNNNNNNGC 1 cut(s) 822
BstNI CCWGG 1 cut(s) 415
BstNSI RCATGY 1 cut(s) 681
BstSCI CCNGG 2 cut(s) 347, 413
BstSFI CTRYAG 2 cut(s) 199, 867
BstV1I GCAGC 2 cut(s) 171, 213
BstX2I RGATCY 1 cut(s) 379
BstXI CCANNNNNNTGG 1 cut(s) 437
BstYI RGATCY 1 cut(s) 379
BsuRI GGCC 5 cut(s) 256, 398, 429, 740, 825
BtsIMutI CAGTG 1 cut(s) 430
Cac8I GCNNGC 4 cut(s) 189, 439, 544, 931
CciI TCATGA 1 cut(s) 39
CfoI GCGC 1 cut(s) 886
Cfr10I RCCGGY 1 cut(s) 833
Cfr13I GGNCC 1 cut(s) 254
Csp6I GTAC 7 cut(s) 68, 242, 697, 709, 721, 812, 892
CviAII CATG 5 cut(s) 40, 251, 258, 678, 691
CviQI GTAC 7 cut(s) 68, 242, 697, 709, 721, 812, 892
DdeI CTNAG 7 cut(s) 74, 383, 393, 638, 700, 829, 947
DpnI GATC 4 cut(s) 171, 381, 567, 579
DpnII GATC 4 cut(s) 169, 379, 565, 577
DraIII CACNNNGTG 1 cut(s) 694
DriI GACNNNNNGTC 1 cut(s) 528
EaeI YGGCCR 3 cut(s) 427, 738, 823
Eam1105I GACNNNNNGTC 1 cut(s) 528
EciI GGCGGA 1 cut(s) 473
Eco130I CCWWGG 2 cut(s) 430, 741
Eco31I GGTCTC 1 cut(s) 851
EcoRII CCWGG 1 cut(s) 413
EcoT14I CCWWGG 2 cut(s) 430, 741
ErhI CCWWGG 2 cut(s) 430, 741
FaeI CATG 5 cut(s) 43, 254, 261, 681, 694
FatI CATG 5 cut(s) 39, 250, 257, 677, 690
FauI CCCGC 1 cut(s) 860
Fnu4HI GCNGC 2 cut(s) 185, 202
Fsp4HI GCNGC 2 cut(s) 185, 202
FspBI CTAG 1 cut(s) 939
GlaI GCGC 1 cut(s) 885
GluI GCNGC 2 cut(s) 185, 202
GsuI CTGGAG 2 cut(s) 332, 436
HaeIII GGCC 5 cut(s) 256, 398, 429, 740, 825
HapII CCGG 2 cut(s) 349, 834
HhaI GCGC 1 cut(s) 886
Hin1II CATG 5 cut(s) 43, 254, 261, 681, 694
Hin6I GCGC 1 cut(s) 884
HinP1I GCGC 1 cut(s) 884
HincII GTYRAC 2 cut(s) 334, 533
HindII GTYRAC 2 cut(s) 334, 533
HinfI GANTC 4 cut(s) 295, 330, 523, 783
HpaII CCGG 2 cut(s) 349, 834
HphI GGTGA 1 cut(s) 812
Hpy166II GTNNAC 7 cut(s) 244, 334, 533, 697, 723, 839, 917
Hpy188I TCNGA 4 cut(s) 216, 394, 506, 703
Hpy188III TCNNGA 3 cut(s) 40, 233, 311
Hpy8I GTNNAC 7 cut(s) 244, 334, 533, 697, 723, 839, 917
HpyAV CCTTC 6 cut(s) 22, 43, 113, 121, 152, 217
HpyCH4III ACNGT 2 cut(s) 166, 914
HpyCH4IV ACGT 1 cut(s) 621
HpyCH4V TGCA 3 cut(s) 201, 290, 681
HpyF10VI GCNNNNNNNGC 1 cut(s) 822
HpyF3I CTNAG 7 cut(s) 74, 383, 393, 638, 700, 829, 947
HpySE526I ACGT 1 cut(s) 621
Hsp92II CATG 5 cut(s) 43, 254, 261, 681, 694
HspAI GCGC 1 cut(s) 884
Kzo9I GATC 4 cut(s) 169, 379, 565, 577
LmnI GCTCC 2 cut(s) 313, 938
Lsp1109I GCAGC 2 cut(s) 171, 213
MaeI CTAG 1 cut(s) 939
MaeII ACGT 1 cut(s) 621
MaeIII GTNAC 2 cut(s) 451, 941
MalI GATC 4 cut(s) 171, 381, 567, 579
MboI GATC 4 cut(s) 169, 379, 565, 577
MboII GAAGA 4 cut(s) 260, 778, 815, 895
MflI RGATCY 1 cut(s) 379
MlsI TGGCCA 3 cut(s) 429, 740, 825
MluCI AATT 5 cut(s) 49, 124, 306, 461, 494
MluNI TGGCCA 3 cut(s) 429, 740, 825
MlyI GAGTC 2 cut(s) 339, 517
Mox20I TGGCCA 3 cut(s) 429, 740, 825
MscI TGGCCA 3 cut(s) 429, 740, 825
MseI TTAA 1 cut(s) 758
MslI CAYNNNNRTG 1 cut(s) 249
Msp20I TGGCCA 3 cut(s) 429, 740, 825
MspI CCGG 2 cut(s) 349, 834
MspR9I CCNGG 2 cut(s) 349, 415
Mva1269I GAATGC 1 cut(s) 404
MvaI CCWGG 1 cut(s) 415
MwoI GCNNNNNNNGC 1 cut(s) 822
NciI CCSGG 1 cut(s) 349
NdeII GATC 4 cut(s) 169, 379, 565, 577
NlaIII CATG 5 cut(s) 43, 254, 261, 681, 694
NspI RCATGY 1 cut(s) 681
PagI TCATGA 1 cut(s) 39
PctI GAATGC 1 cut(s) 404
PfeI GAWTC 2 cut(s) 295, 783
PfoI TCCNGGA 2 cut(s) 347, 413
PkrI GCNGC 2 cut(s) 186, 203
PleI GAGTC 2 cut(s) 338, 517
PpsI GAGTC 2 cut(s) 338, 517
Psp6I CCWGG 1 cut(s) 413
PspGI CCWGG 1 cut(s) 413
PspPI GGNCC 1 cut(s) 254
PstI CTGCAG 1 cut(s) 203
PsuI RGATCY 1 cut(s) 379
RsaI GTAC 7 cut(s) 69, 243, 698, 710, 722, 813, 893
RsaNI GTAC 7 cut(s) 68, 242, 697, 709, 721, 812, 892
RseI CAYNNNNRTG 1 cut(s) 249
SaqAI TTAA 1 cut(s) 758
SatI GCNGC 2 cut(s) 185, 202
Sau3AI GATC 4 cut(s) 169, 379, 565, 577
Sau96I GGNCC 1 cut(s) 254
SchI GAGTC 2 cut(s) 339, 517
ScrFI CCNGG 2 cut(s) 349, 415
SfcI CTRYAG 2 cut(s) 199, 867
SmiMI CAYNNNNRTG 1 cut(s) 249
SpeI ACTAGT 1 cut(s) 938
Sse9I AATT 5 cut(s) 49, 124, 306, 461, 494
SsiI CCGC 3 cut(s) 402, 458, 853
SspMI CTAG 1 cut(s) 939
StyD4I CCNGG 2 cut(s) 347, 413
StyI CCWWGG 2 cut(s) 430, 741
TaaI ACNGT 2 cut(s) 166, 914
TaiI ACGT 1 cut(s) 624
TaqI TCGA 3 cut(s) 492, 633, 873
TasI AATT 5 cut(s) 49, 124, 306, 461, 494
TatI WGTACW 1 cut(s) 696
TfiI GAWTC 2 cut(s) 295, 783
Tru1I TTAA 1 cut(s) 758
Tru9I TTAA 1 cut(s) 758
TscAI CASTG 1 cut(s) 430
TseI GCWGC 2 cut(s) 184, 201
TspDTI ATGAA 2 cut(s) 43, 134
TspGWI ACGGA 1 cut(s) 55
TspRI CASTG 1 cut(s) 430
XapI RAATTY 4 cut(s) 49, 124, 306, 494
XceI RCATGY 1 cut(s) 681
XcmI CCANNNNNNNNNTGG 1 cut(s) 733
XspI CTAG 1 cut(s) 939
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.