Rh4AG113700

Belongs to the peptidase A1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0017644
Physical Location & Seq
Forward (+)
24596450 .. 24606717
10268 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG113700.1

Sequence Viewer

Length: 1098 bp
ATGGCAACTCCCATCAGTTCTACCTCCTCCTCCTTCCTCATTATGAGGTATTTCATCAGTTTGTTCGTACTTCTTGGCCTGAATCTGTGCTCTTTGGACAGGGGCTTTGCCTTGGCAGAAGGAACTTCAAAAAGACACCTCCTTAATCAACAATACACCCATACGGTTGATCTCCACTCTCTACTGCCAGCAACCACCTGCAGCCCCTCCACCAGAGGTAATAAAAGGATGGCATCTCTTGAAGTGGTACACAAGCATGGGCCATGCTCTCATCTTCCTCAACTCAAAGCGACTGCTATGAATCACACTCTAATTTTCGAGCAAGACCAAGCGCGAGTCAACTCAATCAACTCCCGGATTTCCAAGAAATTGTACGGCAATGAGGATCTAAGCCAATCGGAGGCCACCACCGTTCCGGCCCGGTGGGCAAGCAGCCAAAATGCAGGCAACTACATGGTGACGGTGGGATTGGGCACACCTAAAAAACAACTTTCGCTCGTATTTGACACCGGAAGCGACCTCACTTGGACTCAATGCCAACCTTGTTCTGAATTTTGCTACCCACAAGAGGAGCCCATTTTCGATCCTTCGGCCTCTTCCTCATATACCAACGTTTCCTGTAACAGCACAGAGTGCGTCCAACTCAGGACATCTACGGAATCTGACAAATGCTTAGGAGACACATGCCCATATTCCGTGACGGACTTATTAGAGCAAGTTCACCGGTGCCCTCTTGACCAGTCTCCAATTGGGCAAGGCGAAGAAAAAGGGCAGCAGGGCGACATTGTTCTTGACCCATCTTGGCCGGCTGCCAGCTCTGCCCAATGCCAATATAAGGCTGAGAGATTGTTGGCTGAAGTAGCGAGTATGGATCGCAGCGGGTTGTGTTTCCGGAAGCGTTTCTGGGGAGGGTATCTACGCGGCTCCAATTTCAGGGTTGCGATTGGGAACAGAACTGCCAATGGGAAAGAAGAGTTGCGAAAGTATCATGCCGCAGCCATTAATGTGCCTGGCTTATGTCCAGCAACTAGAAATAAGCTGTTTAAAACTGGTGCAACTGGAGCTGGAACTGGACAGGACTGGAAAATAGGTGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04071 ko04140 ko04142 ko04210 ko04915 ko05152 map04071 map04140 map04142 map04210 map04915 map05152
Pfam Domains
Protein Families
TAXi_C TAXi_N

Protein Analysis

365

Amino Acids

39.95

Weight (kDa)

8.15

Isoelectric Point (pI)

39.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Asp PF00026 150 - 205 4.5e-09 Eukaryotic aspartyl protease
TAXi_N PF14543 151 - 234 2.8e-24 Xylanase inhibitor N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017644)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g08261
malus_domestica MD15G1044300.v1.1
pyrus_communis pycom15g04120
rosa_laevigata RLG00000009074 RLG00000009077
rosa_samantha Rh4AG113400 Rh4AG113700 Rh4AG113900 Rh4BG106100 Rh4CG120500 Rh4DG105400 Rh6CG035400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 206
Acc36I ACCTGC 1 cut(s) 206
AccB1I GGYRCC 1 cut(s) 726
AccII CGCG 2 cut(s) 334, 921
AccIII TCCGGA 1 cut(s) 891
AciI CCGC 3 cut(s) 879, 921, 993
AclI AACGTT 1 cut(s) 612
AclWI GGATC 3 cut(s) 393, 578, 879
AcoI YGGCCR 1 cut(s) 803
AcsI RAATTY 1 cut(s) 551
AcuI CTGAAG 1 cut(s) 876
AdeI CACNNNGTG 1 cut(s) 633
AfaI GTAC 3 cut(s) 69, 249, 374
AfiI CCNNNNNNNGG 4 cut(s) 400, 568, 835, 933
AgeI ACCGGT 1 cut(s) 723
AgsI TTSAA 2 cut(s) 129, 242
AjnI CCWGG 1 cut(s) 1009
AluBI AGCT 3 cut(s) 816, 1039, 1064
AluI AGCT 3 cut(s) 816, 1039, 1064
Alw21I GWGCWC 1 cut(s) 92
Alw26I GTCTC 2 cut(s) 672, 747
AlwI GGATC 3 cut(s) 393, 578, 879
Aor13HI TCCGGA 1 cut(s) 891
AoxI GGCC 6 cut(s) 76, 260, 402, 417, 591, 803
ApeKI GCWGC 6 cut(s) 201, 432, 772, 809, 876, 995
ApoI RAATTY 1 cut(s) 551
ArsI GACNNNNNNTTYG 2 cut(s) 89, 121
AseI ATTAAT 1 cut(s) 1002
AsiGI ACCGGT 1 cut(s) 723
Asp700I GAANNNNTTC 1 cut(s) 899
AspLEI GCGC 1 cut(s) 334
AspS9I GGNCC 2 cut(s) 260, 418
AsuC2I CCSGG 2 cut(s) 355, 421
AsuHPI GGTGA 2 cut(s) 469, 713
BaeGI GKGCMC 2 cut(s) 476, 731
BanI GGYRCC 1 cut(s) 726
BanII GRGCYC 1 cut(s) 576
Bbv12I GWGCWC 1 cut(s) 92
BbvI GCAGC 6 cut(s) 213, 444, 784, 796, 888, 1007
BccI CCATC 3 cut(s) 20, 223, 805
BceAI ACGGC 1 cut(s) 391
BciT130I CCWGG 1 cut(s) 1011
BcnI CCSGG 2 cut(s) 355, 421
BcoDI GTCTC 2 cut(s) 672, 747
BfaI CTAG 1 cut(s) 1029
BfmI CTRYAG 1 cut(s) 199
BfuAI ACCTGC 1 cut(s) 206
BglI GCCNNNNNGGC 1 cut(s) 425
BisI GCNGC 8 cut(s) 202, 433, 773, 810, 877, 922, 993, 996
BlsI GCNGC 8 cut(s) 203, 434, 774, 811, 878, 923, 994, 997
Bme1390I CCNGG 3 cut(s) 355, 421, 1011
BmgT120I GGNCC 2 cut(s) 260, 418
BmiI GGNNCC 3 cut(s) 573, 728, 925
BmrFI CCNGG 3 cut(s) 355, 421, 1011
BmsI GCATC 1 cut(s) 242
BpmI CTGGAG 1 cut(s) 1080
Bpu10I CCTNAGC 1 cut(s) 673
BpuMI CCSGG 2 cut(s) 355, 421
BsaJI CCNNGG 1 cut(s) 111
BsaWI WCCGGW 3 cut(s) 509, 723, 891
Bsc4I CCNNNNNNNGG 4 cut(s) 400, 568, 835, 933
Bse118I RCCGGY 2 cut(s) 723, 805
Bse1I ACTGG 5 cut(s) 739, 1054, 1063, 1075, 1085
Bse3DI GCAATG 1 cut(s) 385
BseAI TCCGGA 1 cut(s) 891
BseBI CCWGG 1 cut(s) 1011
BseDI CCNNGG 1 cut(s) 111
BseGI GGATG 1 cut(s) 234
BseLI CCNNNNNNNGG 4 cut(s) 400, 568, 835, 933
BseMI GCAATG 1 cut(s) 385
BseMII CTCAG 2 cut(s) 658, 831
BseNI ACTGG 5 cut(s) 739, 1054, 1063, 1075, 1085
BseRI GAGGAG 3 cut(s) 16, 19, 584
BseSI GKGCMC 2 cut(s) 476, 731
BseXI GCAGC 6 cut(s) 213, 444, 784, 796, 888, 1007
Bsh1236I CGCG 2 cut(s) 334, 921
BshFI GGCC 6 cut(s) 78, 262, 404, 419, 593, 805
BshNI GGYRCC 1 cut(s) 726
BshTI ACCGGT 1 cut(s) 723
BsiHKAI GWGCWC 1 cut(s) 92
BsiSI CCGG 7 cut(s) 355, 416, 421, 510, 724, 806, 892
BslI CCNNNNNNNGG 4 cut(s) 400, 568, 835, 933
BsmAI GTCTC 2 cut(s) 672, 747
BsnI GGCC 6 cut(s) 78, 262, 404, 419, 593, 805
Bsp1286I GDGCHC 4 cut(s) 92, 476, 576, 731
Bsp13I TCCGGA 1 cut(s) 891
Bsp143I GATC 4 cut(s) 169, 385, 583, 871
BspACI CCGC 3 cut(s) 879, 921, 993
BspANI GGCC 6 cut(s) 78, 262, 404, 419, 593, 805
BspCNI CTCAG 2 cut(s) 657, 832
BspEI TCCGGA 1 cut(s) 891
BspFNI CGCG 2 cut(s) 334, 921
BspLI GGNNCC 3 cut(s) 573, 728, 925
BspMAI CTGCAG 1 cut(s) 203
BspMI ACCTGC 1 cut(s) 206
BspPI GGATC 3 cut(s) 393, 578, 879
BspT107I GGYRCC 1 cut(s) 726
BsrDI GCAATG 1 cut(s) 385
BsrFI RCCGGY 2 cut(s) 723, 805
BsrI ACTGG 5 cut(s) 739, 1054, 1063, 1075, 1085
BssAI RCCGGY 2 cut(s) 723, 805
BssECI CCNNGG 1 cut(s) 111
BssMI GATC 4 cut(s) 169, 385, 583, 871
BssT1I CCWWGG 1 cut(s) 111
Bst2UI CCWGG 1 cut(s) 1011
Bst4CI ACNGT 3 cut(s) 166, 412, 463
Bst6I CTCTTC 2 cut(s) 601, 966
BstAPI GCANNNNNTGC 1 cut(s) 633
BstC8I GCNNGC 5 cut(s) 189, 430, 445, 807, 814
BstDEI CTNAG 4 cut(s) 389, 644, 673, 840
BstF5I GGATG 1 cut(s) 234
BstFNI CGCG 2 cut(s) 334, 921
BstHHI GCGC 1 cut(s) 334
BstKTI GATC 4 cut(s) 172, 388, 586, 874
BstMAI GTCTC 2 cut(s) 672, 747
BstMBI GATC 4 cut(s) 169, 385, 583, 871
BstMWI GCNNNNNNNGC 5 cut(s) 425, 633, 818, 860, 1061
BstNI CCWGG 1 cut(s) 1011
BstNSI RCATGY 1 cut(s) 687
BstSCI CCNGG 3 cut(s) 353, 419, 1009
BstSFI CTRYAG 1 cut(s) 199
BstSLI GKGCMC 2 cut(s) 476, 731
BstUI CGCG 2 cut(s) 334, 921
BstV1I GCAGC 6 cut(s) 213, 444, 784, 796, 888, 1007
BstX2I RGATCY 1 cut(s) 385
BstYI RGATCY 1 cut(s) 385
BsuRI GGCC 6 cut(s) 78, 262, 404, 419, 593, 805
BtsCI GGATG 1 cut(s) 234
BveI ACCTGC 1 cut(s) 206
Cac8I GCNNGC 5 cut(s) 189, 430, 445, 807, 814
CfoI GCGC 1 cut(s) 334
Cfr10I RCCGGY 2 cut(s) 723, 805
Cfr13I GGNCC 2 cut(s) 260, 418
CseI GACGC 1 cut(s) 625
Csp6I GTAC 3 cut(s) 68, 248, 373
CspAI ACCGGT 1 cut(s) 723
CviAII CATG 5 cut(s) 257, 264, 454, 684, 989
CviQI GTAC 3 cut(s) 68, 248, 373
DdeI CTNAG 4 cut(s) 389, 644, 673, 840
DpnI GATC 4 cut(s) 171, 387, 585, 873
DpnII GATC 4 cut(s) 169, 385, 583, 871
DraI TTTAAA 1 cut(s) 1045
DraIII CACNNNGTG 1 cut(s) 633
EaeI YGGCCR 1 cut(s) 803
Eam1104I CTCTTC 2 cut(s) 601, 966
EarI CTCTTC 2 cut(s) 601, 966
Eco130I CCWWGG 1 cut(s) 111
Eco24I GRGCYC 1 cut(s) 576
Eco57I CTGAAG 1 cut(s) 876
EcoRII CCWGG 1 cut(s) 1009
EcoT14I CCWWGG 1 cut(s) 111
EcoT38I GRGCYC 1 cut(s) 576
ErhI CCWWGG 1 cut(s) 111
FaeI CATG 5 cut(s) 260, 267, 457, 687, 992
FatI CATG 5 cut(s) 256, 263, 453, 683, 988
FauI CCCGC 1 cut(s) 872
Fnu4HI GCNGC 8 cut(s) 202, 433, 773, 810, 877, 922, 993, 996
FokI GGATG 1 cut(s) 241
FriOI GRGCYC 1 cut(s) 576
Fsp4HI GCNGC 8 cut(s) 202, 433, 773, 810, 877, 922, 993, 996
FspBI CTAG 1 cut(s) 1029
GlaI GCGC 1 cut(s) 333
GluI GCNGC 8 cut(s) 202, 433, 773, 810, 877, 922, 993, 996
GsuI CTGGAG 1 cut(s) 1080
HaeIII GGCC 6 cut(s) 78, 262, 404, 419, 593, 805
HapII CCGG 7 cut(s) 355, 416, 421, 510, 724, 806, 892
HgaI GACGC 1 cut(s) 625
HhaI GCGC 1 cut(s) 334
Hin1II CATG 5 cut(s) 260, 267, 457, 687, 992
Hin6I GCGC 1 cut(s) 332
HinP1I GCGC 1 cut(s) 332
HincII GTYRAC 1 cut(s) 340
HindII GTYRAC 1 cut(s) 340
HinfI GANTC 5 cut(s) 82, 301, 336, 529, 659
HpaII CCGG 7 cut(s) 355, 416, 421, 510, 724, 806, 892
HphI GGTGA 2 cut(s) 469, 713
Hpy166II GTNNAC 3 cut(s) 250, 340, 721
Hpy188I TCNGA 3 cut(s) 400, 550, 664
Hpy188III TCNNGA 5 cut(s) 239, 646, 734, 791, 892
Hpy8I GTNNAC 3 cut(s) 250, 340, 721
HpyAV CCTTC 3 cut(s) 43, 113, 597
HpyCH4III ACNGT 3 cut(s) 166, 412, 463
HpyCH4IV ACGT 1 cut(s) 612
HpyCH4V TGCA 3 cut(s) 201, 443, 1055
HpyF10VI GCNNNNNNNGC 5 cut(s) 425, 633, 818, 860, 1061
HpyF3I CTNAG 4 cut(s) 389, 644, 673, 840
HpySE526I ACGT 1 cut(s) 612
Hsp92II CATG 5 cut(s) 260, 267, 457, 687, 992
HspAI GCGC 1 cut(s) 332
Kpn2I TCCGGA 1 cut(s) 891
KroI GCCGGC 1 cut(s) 805
KroNI GCCGGC 1 cut(s) 807
Kzo9I GATC 4 cut(s) 169, 385, 583, 871
LmnI GCTCC 3 cut(s) 571, 929, 1061
Lsp1109I GCAGC 6 cut(s) 213, 444, 784, 796, 888, 1007
LweI GCATC 1 cut(s) 242
MaeI CTAG 1 cut(s) 1029
MaeII ACGT 1 cut(s) 612
MaeIII GTNAC 3 cut(s) 457, 620, 697
MalI GATC 4 cut(s) 171, 387, 585, 873
MboI GATC 4 cut(s) 169, 385, 583, 871
MboII GAAGA 4 cut(s) 266, 588, 773, 983
MfeI CAATTG 1 cut(s) 747
MflI RGATCY 1 cut(s) 385
MhlI GDGCHC 4 cut(s) 92, 476, 576, 731
MluCI AATT 5 cut(s) 312, 368, 551, 747, 928
MlyI GAGTC 2 cut(s) 345, 523
MmeI TCCRAC 1 cut(s) 664
MroI TCCGGA 1 cut(s) 891
MroNI GCCGGC 1 cut(s) 805
MroXI GAANNNNTTC 1 cut(s) 899
MseI TTAA 3 cut(s) 144, 1002, 1044
MslI CAYNNNNRTG 2 cut(s) 255, 1004
MspA1I CMGCKG 1 cut(s) 879
MspI CCGG 7 cut(s) 355, 416, 421, 510, 724, 806, 892
MspR9I CCNGG 3 cut(s) 355, 421, 1011
MunI CAATTG 1 cut(s) 747
MvaI CCWGG 1 cut(s) 1011
MvnI CGCG 2 cut(s) 334, 921
MwoI GCNNNNNNNGC 5 cut(s) 425, 633, 818, 860, 1061
NaeI GCCGGC 1 cut(s) 807
NciI CCSGG 2 cut(s) 355, 421
NdeII GATC 4 cut(s) 169, 385, 583, 871
NgoMIV GCCGGC 1 cut(s) 805
NlaIII CATG 5 cut(s) 260, 267, 457, 687, 992
NlaIV GGNNCC 3 cut(s) 573, 728, 925
NmuCI GTSAC 2 cut(s) 457, 697
NspI RCATGY 1 cut(s) 687
PaqCI CACCTGC 1 cut(s) 206
PdiI GCCGGC 1 cut(s) 807
PdmI GAANNNNTTC 1 cut(s) 899
PfeI GAWTC 3 cut(s) 82, 301, 659
PfoI TCCNGGA 1 cut(s) 353
PinAI ACCGGT 1 cut(s) 723
PkrI GCNGC 8 cut(s) 203, 434, 774, 811, 878, 923, 994, 997
PleI GAGTC 2 cut(s) 344, 523
PpsI GAGTC 2 cut(s) 344, 523
PshBI ATTAAT 1 cut(s) 1002
Psp1406I AACGTT 1 cut(s) 612
Psp6I CCWGG 1 cut(s) 1009
PspGI CCWGG 1 cut(s) 1009
PspN4I GGNNCC 3 cut(s) 573, 728, 925
PspPI GGNCC 2 cut(s) 260, 418
PstI CTGCAG 1 cut(s) 203
PsuI RGATCY 1 cut(s) 385
RsaI GTAC 3 cut(s) 69, 249, 374
RsaNI GTAC 3 cut(s) 68, 248, 373
RseI CAYNNNNRTG 2 cut(s) 255, 1004
SaqAI TTAA 3 cut(s) 144, 1002, 1044
SatI GCNGC 8 cut(s) 202, 433, 773, 810, 877, 922, 993, 996
Sau3AI GATC 4 cut(s) 169, 385, 583, 871
Sau96I GGNCC 2 cut(s) 260, 418
SchI GAGTC 2 cut(s) 345, 523
ScrFI CCNGG 3 cut(s) 355, 421, 1011
SduI GDGCHC 4 cut(s) 92, 476, 576, 731
SfaNI GCATC 1 cut(s) 242
SfcI CTRYAG 1 cut(s) 199
SgrAI CRCCGGYG 1 cut(s) 723
SmiMI CAYNNNNRTG 2 cut(s) 255, 1004
Sse9I AATT 5 cut(s) 312, 368, 551, 747, 928
SsiI CCGC 3 cut(s) 879, 921, 993
SspMI CTAG 1 cut(s) 1029
StyD4I CCNGG 3 cut(s) 353, 419, 1009
StyI CCWWGG 1 cut(s) 111
TaaI ACNGT 3 cut(s) 166, 412, 463
TaiI ACGT 1 cut(s) 615
TaqI TCGA 2 cut(s) 318, 582
TasI AATT 5 cut(s) 312, 368, 551, 747, 928
TauI GCSGC 2 cut(s) 924, 995
TfiI GAWTC 3 cut(s) 82, 301, 659
Tru1I TTAA 3 cut(s) 144, 1002, 1044
Tru9I TTAA 3 cut(s) 144, 1002, 1044
TseFI GTSAC 2 cut(s) 457, 697
TseI GCWGC 6 cut(s) 201, 432, 772, 809, 876, 995
Tsp45I GTSAC 2 cut(s) 457, 697
TspDTI ATGAA 2 cut(s) 43, 314
TspGWI ACGGA 3 cut(s) 671, 685, 716
VspI ATTAAT 1 cut(s) 1002
XapI RAATTY 1 cut(s) 551
XceI RCATGY 1 cut(s) 687
XcmI CCANNNNNNNNNTGG 1 cut(s) 746
XmnI GAANNNNTTC 1 cut(s) 899
XspI CTAG 1 cut(s) 1029
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.