RLG00000009077

Belongs to the peptidase A1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0017644
Physical Location & Seq
Reverse (-)
46135352 .. 46136758
1407 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000009077

Sequence Viewer

Length: 975 bp
ATGTCAGCTATTAGTCCTAGCTCCTCCTCCTCCTCTTCCACCCCCATTATGAGGTATTTCACCGGTTTGTCTCTAATTCTAAGCTTGACTCTGTGTTCTCTGGACAAGGGCTTTGCCTTGGCAGAAGGAGATTCAAAAGAACATCTCCTTCATCAACCACACATCCACACAGTTGATCTTCGATCTCTACTGCCAGCAAGCACTTGCAGCCCCTGCACCAGAGCGACTGCTATGAATCACACTCTAATTCTCGAGCAAGACCAAGCGCGAGTCAACTCAATCAACTCCCGGATTTCCAAGAAATTGAACGGCAATGAGGATCTAAGCCAATTGGAGGCCACCACCGTCCCGGCCCGGTGGGCAAGCAGCCAAAATGTAGGAGACACATGCCCATATTCCGTGAGGTACGGAGACTCATCTTACACCACTGGATATTTCGCCACAGACAAGCTGGCCTTAACTCCTAACGCGCGACAAAACGTAGGCTTCCACGACGGCTCGGCCGGTTTACTTGGTTTCTCCCTCAACAAGTTCTCCCTTGTCGAACAAACCGCACAAAAGTACAGCCGCTTCTTTTCCTACTGTCTGCCACCAACCGCAAGCTCCACCGGTTACCTCAACTTCGGCGCACCCATTGGAGCTTCCAATGCTGCCCTCTCAATTCCTGCTTCGGTGTTTTCGTCCCCGGGGACAATCATCGACTCCGGAACCGTCATATCGCAGCTGCCGTCCACCTTGTATACCGCTTTGCGGGATGCGTTTTGGGCAACGATGACAAGCTATCCGTTAATTGCGGGGGATAAGCTCCCAGATACATGCTACAACCTTAGTGGCTATCCAACGGTTTGCCTGGCTTTTTCTGGGAATGATGATGCTAACGACATTGCGATTTTCAAGAATACTCAGCAGAAGAATATGGAGGTGTTGTATGACGTTGCCAGAGGGAGAGTTGGATTTGCTCCCGATGGTTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04071 ko04140 ko04142 ko04210 ko04915 ko05152 map04071 map04140 map04142 map04210 map04915 map05152
Pfam Domains
Protein Families
TAXi_C TAXi_N

Protein Analysis

325

Amino Acids

34.69

Weight (kDa)

6.05

Isoelectric Point (pI)

36.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAXi_N PF14543 52 - 209 2e-17 Xylanase inhibitor N-terminal
TAXi_C PF14541 216 - 278 6.8e-06 Xylanase inhibitor C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017644)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g08261
malus_domestica MD15G1044300.v1.1
pyrus_communis pycom15g04120
rosa_laevigata RLG00000009074 RLG00000009077
rosa_samantha Rh4AG113400 Rh4AG113700 Rh4AG113900 Rh4BG106100 Rh4CG120500 Rh4DG105400 Rh6CG035400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 740
AccII CGCG 3 cut(s) 268, 470, 472
AccIII TCCGGA 1 cut(s) 704
AciI CCGC 6 cut(s) 552, 568, 597, 744, 751, 794
AclWI GGATC 1 cut(s) 327
AcoI YGGCCR 1 cut(s) 501
AfaI GTAC 2 cut(s) 407, 563
AfiI CCNNNNNNNGG 3 cut(s) 51, 334, 750
AgeI ACCGGT 2 cut(s) 62, 608
AgsI TTSAA 3 cut(s) 135, 307, 895
AjnI CCWGG 1 cut(s) 849
AluBI AGCT 9 cut(s) 8, 21, 84, 451, 603, 641, 724, 780, 805
AluI AGCT 9 cut(s) 8, 21, 84, 451, 603, 641, 724, 780, 805
Alw26I GTCTC 3 cut(s) 75, 375, 405
AlwI GGATC 1 cut(s) 327
AlwNI CAGNNNCTG 1 cut(s) 213
Ama87I CYCGRG 2 cut(s) 251, 685
Aor13HI TCCGGA 1 cut(s) 704
AoxI GGCC 4 cut(s) 336, 351, 453, 501
ApeKI GCWGC 5 cut(s) 207, 366, 650, 721, 724
ArsI GACNNNNNNTTYG 2 cut(s) 95, 127
AsiGI ACCGGT 2 cut(s) 62, 608
AspLEI GCGC 3 cut(s) 268, 472, 629
AspS9I GGNCC 1 cut(s) 352
AsuC2I CCSGG 5 cut(s) 289, 350, 355, 686, 687
AsuHPI GGTGA 1 cut(s) 52
AvaI CYCGRG 2 cut(s) 251, 685
BarI GAAGNNNNNNTAC 2 cut(s) 554, 586
BbvI GCAGC 5 cut(s) 219, 378, 637, 711, 733
BccI CCATC 1 cut(s) 959
BceAI ACGGC 3 cut(s) 325, 511, 712
BciT130I CCWGG 1 cut(s) 851
BcnI CCSGG 5 cut(s) 289, 350, 355, 686, 687
BcoDI GTCTC 3 cut(s) 75, 375, 405
BfaI CTAG 1 cut(s) 18
BglI GCCNNNNNGGC 1 cut(s) 359
BisI GCNGC 6 cut(s) 208, 367, 568, 651, 722, 725
BlsI GCNGC 6 cut(s) 209, 368, 569, 652, 723, 726
Bme1390I CCNGG 6 cut(s) 289, 350, 355, 686, 687, 851
BmeT110I CYCGRG 2 cut(s) 251, 685
BmgT120I GGNCC 1 cut(s) 352
BmiI GGNNCC 1 cut(s) 709
BmrFI CCNGG 6 cut(s) 289, 350, 355, 686, 687, 851
BmsI GCATC 2 cut(s) 745, 862
BpuMI CCSGG 5 cut(s) 289, 350, 355, 686, 687
BsaJI CCNNGG 4 cut(s) 117, 684, 685, 686
BsaWI WCCGGW 3 cut(s) 62, 608, 704
BsaXI ACNNNNNCTCC 4 cut(s) 518, 548, 911, 941
Bsc4I CCNNNNNNNGG 3 cut(s) 51, 334, 750
Bse118I RCCGGY 3 cut(s) 62, 503, 608
Bse1I ACTGG 1 cut(s) 433
Bse3DI GCAATG 2 cut(s) 319, 882
BseAI TCCGGA 1 cut(s) 704
BseBI CCWGG 1 cut(s) 851
BseDI CCNNGG 4 cut(s) 117, 684, 685, 686
BseGI GGATG 2 cut(s) 162, 760
BseLI CCNNNNNNNGG 3 cut(s) 51, 334, 750
BseMI GCAATG 2 cut(s) 319, 882
BseMII CTCAG 1 cut(s) 917
BseNI ACTGG 1 cut(s) 433
BseRI GAGGAG 4 cut(s) 13, 16, 19, 22
BseX3I CGGCCG 1 cut(s) 501
BseXI GCAGC 5 cut(s) 219, 378, 637, 711, 733
BsgI GTGCAG 1 cut(s) 199
Bsh1236I CGCG 3 cut(s) 268, 470, 472
Bsh1285I CGRYCG 1 cut(s) 504
BshFI GGCC 4 cut(s) 338, 353, 455, 503
BshTI ACCGGT 2 cut(s) 62, 608
BsiEI CGRYCG 1 cut(s) 504
BsiHKCI CYCGRG 2 cut(s) 251, 685
BsiSI CCGG 8 cut(s) 63, 289, 350, 355, 504, 609, 686, 705
BslFI GGGAC 3 cut(s) 332, 667, 703
BslI CCNNNNNNNGG 3 cut(s) 51, 334, 750
BsmAI GTCTC 3 cut(s) 75, 375, 405
BsmFI GGGAC 3 cut(s) 332, 667, 703
BsnI GGCC 4 cut(s) 338, 353, 455, 503
BsoBI CYCGRG 2 cut(s) 251, 685
Bsp13I TCCGGA 1 cut(s) 704
Bsp143I GATC 3 cut(s) 175, 182, 319
BspACI CCGC 6 cut(s) 552, 568, 597, 744, 751, 794
BspANI GGCC 4 cut(s) 338, 353, 455, 503
BspCNI CTCAG 1 cut(s) 916
BspEI TCCGGA 1 cut(s) 704
BspFNI CGCG 3 cut(s) 268, 470, 472
BspLI GGNNCC 1 cut(s) 709
BspPI GGATC 1 cut(s) 327
BsrDI GCAATG 2 cut(s) 319, 882
BsrFI RCCGGY 3 cut(s) 62, 503, 608
BsrI ACTGG 1 cut(s) 433
BssAI RCCGGY 3 cut(s) 62, 503, 608
BssECI CCNNGG 4 cut(s) 117, 684, 685, 686
BssMI GATC 3 cut(s) 175, 182, 319
BssNAI GTATAC 1 cut(s) 741
BssT1I CCWWGG 1 cut(s) 117
Bst1107I GTATAC 1 cut(s) 741
Bst2UI CCWGG 1 cut(s) 851
Bst4CI ACNGT 5 cut(s) 172, 346, 584, 712, 844
Bst6I CTCTTC 1 cut(s) 40
BstAPI GCANNNNNTGC 1 cut(s) 213
BstC8I GCNNGC 5 cut(s) 195, 199, 364, 453, 601
BstDEI CTNAG 4 cut(s) 80, 323, 827, 903
BstEII GGTNACC 1 cut(s) 611
BstF5I GGATG 2 cut(s) 162, 760
BstFNI CGCG 3 cut(s) 268, 470, 472
BstHHI GCGC 3 cut(s) 268, 472, 629
BstKTI GATC 3 cut(s) 178, 185, 322
BstMAI GTCTC 3 cut(s) 75, 375, 405
BstMBI GATC 3 cut(s) 175, 182, 319
BstMCI CGRYCG 1 cut(s) 504
BstMWI GCNNNNNNNGC 5 cut(s) 207, 213, 359, 647, 764
BstNI CCWGG 1 cut(s) 851
BstNSI RCATGY 2 cut(s) 390, 819
BstPI GGTNACC 1 cut(s) 611
BstSCI CCNGG 6 cut(s) 287, 348, 353, 684, 685, 849
BstUI CGCG 3 cut(s) 268, 470, 472
BstV1I GCAGC 5 cut(s) 219, 378, 637, 711, 733
BstX2I RGATCY 1 cut(s) 319
BstYI RGATCY 1 cut(s) 319
BstZ17I GTATAC 1 cut(s) 741
BstZI CGGCCG 1 cut(s) 501
BsuRI GGCC 4 cut(s) 338, 353, 455, 503
BtsCI GGATG 2 cut(s) 162, 760
BtsIMutI CAGTG 1 cut(s) 426
Cac8I GCNNGC 5 cut(s) 195, 199, 364, 453, 601
CaiI CAGNNNCTG 1 cut(s) 213
CfoI GCGC 3 cut(s) 268, 472, 629
Cfr10I RCCGGY 3 cut(s) 62, 503, 608
Cfr13I GGNCC 1 cut(s) 352
Cfr9I CCCGGG 1 cut(s) 685
Csp6I GTAC 2 cut(s) 406, 562
CspAI ACCGGT 2 cut(s) 62, 608
CspCI CAANNNNNGTGG 2 cut(s) 811, 846
CviAII CATG 2 cut(s) 387, 816
CviQI GTAC 2 cut(s) 406, 562
DdeI CTNAG 4 cut(s) 80, 323, 827, 903
DpnI GATC 3 cut(s) 177, 184, 321
DpnII GATC 3 cut(s) 175, 182, 319
EaeI YGGCCR 1 cut(s) 501
EagI CGGCCG 1 cut(s) 501
Eam1104I CTCTTC 1 cut(s) 40
EarI CTCTTC 1 cut(s) 40
EclXI CGGCCG 1 cut(s) 501
Eco130I CCWWGG 1 cut(s) 117
Eco52I CGGCCG 1 cut(s) 501
Eco88I CYCGRG 2 cut(s) 251, 685
Eco91I GGTNACC 1 cut(s) 611
EcoO65I GGTNACC 1 cut(s) 611
EcoRII CCWGG 1 cut(s) 849
EcoT14I CCWWGG 1 cut(s) 117
ErhI CCWWGG 1 cut(s) 117
FaeI CATG 2 cut(s) 390, 819
FaiI YATR 9 cut(s) 50, 233, 388, 394, 716, 741, 817, 917, 930
FalI AAGNNNNNCTT 2 cut(s) 440, 472
FaqI GGGAC 3 cut(s) 332, 667, 703
FatI CATG 2 cut(s) 386, 815
FauI CCCGC 2 cut(s) 744, 787
FblI GTMKAC 1 cut(s) 740
Fnu4HI GCNGC 6 cut(s) 208, 367, 568, 651, 722, 725
FokI GGATG 2 cut(s) 149, 767
Fsp4HI GCNGC 6 cut(s) 208, 367, 568, 651, 722, 725
FspBI CTAG 1 cut(s) 18
GlaI GCGC 3 cut(s) 267, 471, 628
GluI GCNGC 6 cut(s) 208, 367, 568, 651, 722, 725
HaeIII GGCC 4 cut(s) 338, 353, 455, 503
HapII CCGG 8 cut(s) 63, 289, 350, 355, 504, 609, 686, 705
HhaI GCGC 3 cut(s) 268, 472, 629
Hin1II CATG 2 cut(s) 390, 819
Hin6I GCGC 3 cut(s) 266, 470, 627
HinP1I GCGC 3 cut(s) 266, 470, 627
HincII GTYRAC 1 cut(s) 274
HindII GTYRAC 1 cut(s) 274
HindIII AAGCTT 1 cut(s) 82
HinfI GANTC 6 cut(s) 88, 131, 235, 270, 413, 701
HpaII CCGG 8 cut(s) 63, 289, 350, 355, 504, 609, 686, 705
HphI GGTGA 1 cut(s) 52
Hpy166II GTNNAC 4 cut(s) 274, 509, 732, 741
Hpy188III TCNNGA 5 cut(s) 101, 251, 705, 895, 962
Hpy8I GTNNAC 4 cut(s) 274, 509, 732, 741
Hpy99I CGWCG 1 cut(s) 497
HpyAV CCTTC 2 cut(s) 119, 158
HpyCH4III ACNGT 5 cut(s) 172, 346, 584, 712, 844
HpyCH4IV ACGT 2 cut(s) 480, 933
HpyCH4V TGCA 2 cut(s) 207, 216
HpyF10VI GCNNNNNNNGC 5 cut(s) 207, 213, 359, 647, 764
HpyF3I CTNAG 4 cut(s) 80, 323, 827, 903
HpySE526I ACGT 2 cut(s) 480, 933
Hsp92II CATG 2 cut(s) 390, 819
HspAI GCGC 3 cut(s) 266, 470, 627
Kpn2I TCCGGA 1 cut(s) 704
Kzo9I GATC 3 cut(s) 175, 182, 319
LmnI GCTCC 5 cut(s) 26, 608, 638, 810, 964
Lsp1109I GCAGC 5 cut(s) 219, 378, 637, 711, 733
LweI GCATC 2 cut(s) 745, 862
MaeI CTAG 1 cut(s) 18
MaeII ACGT 2 cut(s) 480, 933
MaeIII GTNAC 1 cut(s) 611
MalI GATC 3 cut(s) 177, 184, 321
MboI GATC 3 cut(s) 175, 182, 319
MboII GAAGA 3 cut(s) 27, 170, 922
MfeI CAATTG 1 cut(s) 329
MflI RGATCY 1 cut(s) 319
MluCI AATT 6 cut(s) 75, 246, 302, 329, 660, 789
MlyI GAGTC 4 cut(s) 82, 279, 407, 695
MmeI TCCRAC 2 cut(s) 863, 931
MroI TCCGGA 1 cut(s) 704
MseI TTAA 2 cut(s) 458, 788
MspA1I CMGCKG 1 cut(s) 724
MspI CCGG 8 cut(s) 63, 289, 350, 355, 504, 609, 686, 705
MspR9I CCNGG 6 cut(s) 289, 350, 355, 686, 687, 851
MunI CAATTG 1 cut(s) 329
MvaI CCWGG 1 cut(s) 851
MvnI CGCG 3 cut(s) 268, 470, 472
MwoI GCNNNNNNNGC 5 cut(s) 207, 213, 359, 647, 764
NciI CCSGG 5 cut(s) 289, 350, 355, 686, 687
NdeII GATC 3 cut(s) 175, 182, 319
NlaIII CATG 2 cut(s) 390, 819
NlaIV GGNNCC 1 cut(s) 709
NmeAIII GCCGAG 1 cut(s) 479
NspI RCATGY 2 cut(s) 390, 819
PaeR7I CTCGAG 1 cut(s) 251
PcsI WCGNNNNNNNCGW 2 cut(s) 677, 725
PfeI GAWTC 2 cut(s) 131, 235
PfoI TCCNGGA 1 cut(s) 287
PinAI ACCGGT 2 cut(s) 62, 608
PkrI GCNGC 6 cut(s) 209, 368, 569, 652, 723, 726
PleI GAGTC 4 cut(s) 82, 278, 407, 695
PpsI GAGTC 4 cut(s) 82, 278, 407, 695
Psp6I CCWGG 1 cut(s) 849
PspEI GGTNACC 1 cut(s) 611
PspGI CCWGG 1 cut(s) 849
PspN4I GGNNCC 1 cut(s) 709
PspPI GGNCC 1 cut(s) 352
PstNI CAGNNNCTG 1 cut(s) 213
PsuI RGATCY 1 cut(s) 319
PvuII CAGCTG 1 cut(s) 724
RsaI GTAC 2 cut(s) 407, 563
RsaNI GTAC 2 cut(s) 406, 562
SaqAI TTAA 2 cut(s) 458, 788
SatI GCNGC 6 cut(s) 208, 367, 568, 651, 722, 725
Sau3AI GATC 3 cut(s) 175, 182, 319
Sau96I GGNCC 1 cut(s) 352
SchI GAGTC 4 cut(s) 82, 279, 407, 695
ScrFI CCNGG 6 cut(s) 289, 350, 355, 686, 687, 851
SfaNI GCATC 2 cut(s) 745, 862
Sfr274I CTCGAG 1 cut(s) 251
SlaI CTCGAG 1 cut(s) 251
SmaI CCCGGG 1 cut(s) 687
SmlI CTYRAG 1 cut(s) 251
SmoI CTYRAG 1 cut(s) 251
Sse9I AATT 6 cut(s) 75, 246, 302, 329, 660, 789
SsiI CCGC 6 cut(s) 552, 568, 597, 744, 751, 794
SspMI CTAG 1 cut(s) 18
StyD4I CCNGG 6 cut(s) 287, 348, 353, 684, 685, 849
StyI CCWWGG 1 cut(s) 117
TaaI ACNGT 5 cut(s) 172, 346, 584, 712, 844
TaiI ACGT 2 cut(s) 483, 936
TaqI TCGA 4 cut(s) 181, 252, 543, 699
TasI AATT 6 cut(s) 75, 246, 302, 329, 660, 789
TatI WGTACW 1 cut(s) 561
TauI GCSGC 1 cut(s) 570
TfiI GAWTC 2 cut(s) 131, 235
Tru1I TTAA 2 cut(s) 458, 788
Tru9I TTAA 2 cut(s) 458, 788
TscAI CASTG 1 cut(s) 433
TseI GCWGC 5 cut(s) 207, 366, 650, 721, 724
TspDTI ATGAA 2 cut(s) 140, 248
TspGWI ACGGA 3 cut(s) 388, 423, 774
TspMI CCCGGG 1 cut(s) 685
TspRI CASTG 1 cut(s) 433
XceI RCATGY 2 cut(s) 390, 819
XcmI CCANNNNNNNNNTGG 1 cut(s) 448
XhoI CTCGAG 1 cut(s) 251
XmaI CCCGGG 1 cut(s) 685
XmiI GTMKAC 1 cut(s) 740
XspI CTAG 1 cut(s) 18
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.