Rh4AG113900

Belongs to the peptidase A1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0017644
Physical Location & Seq
Forward (+)
24623492 .. 24625050
1559 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG113900.1

Sequence Viewer

Length: 630 bp
ATGAGGAATTTCATCAGTTTGTCTCTACTTCTATGCCTGACCCTCTGCTCTTTGGACAAAGGCTTTGCCTTGGCCGAAGCAGATTCAAAAGAACAACTTGTTGAATTCACCCACACAGTTGATCCCCGCTCTCTACTGCCAACAACGACCTGCAGCTCCTCCACCAAAGGTAATAAGAGGAAGGCATCTCTTGAAGTGGTGCACAAGCATGGGCCATGCTCTCATCTCCCTCAACACCAAGCGACTGCTACGAATCACACTCAAATTCTAGAGCAAGACCAAGTGCGAGTCAACTCAATCAACTCCCAGATTTCCAAGAAATTGAACAGCAACGAGGATCTAAGCCAATCGAAGGCCACCACCCTCCCGACCCGGTGGGCTACCAGCCAAGGTGCAAGCAACTACGTGGTGACTGTGGGATTGGGCACACCTAACAAACAACTTTCGCTCGAATTTGACACCGGAAGCTATCTCACTTGGACTCAATGTCAACCTTGTGCTGGCTCTTGCTACCCACAAAAGGACCCCATTTTCGATCCCTCGGCCTCCAGCTCATATACCAACATTTCTTGTAATAGCACAGACTGCGTCCAACTCAAGACAACTACGAGTAAATACCTAGAACCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04071 ko04140 ko04142 ko04210 ko04915 ko05152 map04071 map04140 map04142 map04210 map04915 map05152
Pfam Domains
Protein Families
TAXi_C TAXi_N

Protein Analysis

209

Amino Acids

22.83

Weight (kDa)

7.56

Isoelectric Point (pI)

34.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Asp PF00026 134 - 188 4.1e-08 Eukaryotic aspartyl protease
TAXi_N PF14543 135 - 200 2.8e-20 Xylanase inhibitor N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017644)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g08261
malus_domestica MD15G1044300.v1.1
pyrus_communis pycom15g04120
rosa_laevigata RLG00000009074 RLG00000009077
rosa_samantha Rh4AG113400 Rh4AG113700 Rh4AG113900 Rh4BG106100 Rh4CG120500 Rh4DG105400 Rh6CG035400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 158
AccBSI CCGCTC 1 cut(s) 129
AciI CCGC 1 cut(s) 127
AclWI GGATC 3 cut(s) 116, 345, 530
AcoI YGGCCR 1 cut(s) 72
AcsI RAATTY 4 cut(s) 7, 104, 264, 452
AfiI CCNNNNNNNGG 3 cut(s) 352, 500, 520
AgsI TTSAA 4 cut(s) 87, 104, 194, 325
AhdI GACNNNNNGTC 1 cut(s) 486
AluBI AGCT 3 cut(s) 156, 468, 552
AluI AGCT 3 cut(s) 156, 468, 552
Alw21I GWGCWC 1 cut(s) 204
Alw26I GTCTC 1 cut(s) 27
Alw44I GTGCAC 1 cut(s) 200
AlwI GGATC 3 cut(s) 116, 345, 530
AoxI GGCC 4 cut(s) 72, 212, 354, 543
ApaLI GTGCAC 1 cut(s) 200
ApeKI GCWGC 1 cut(s) 153
ApoI RAATTY 4 cut(s) 7, 104, 264, 452
ArsI GACNNNNNNTTYG 4 cut(s) 47, 79, 515, 547
AspS9I GGNCC 2 cut(s) 212, 523
AsuC2I CCSGG 1 cut(s) 373
AsuHPI GGTGA 2 cut(s) 100, 421
AvaII GGWCC 1 cut(s) 523
BaeGI GKGCMC 2 cut(s) 204, 428
Bbv12I GWGCWC 1 cut(s) 204
BbvI GCAGC 1 cut(s) 165
BcnI CCSGG 1 cut(s) 373
BcoDI GTCTC 1 cut(s) 27
BfaI CTAG 2 cut(s) 269, 620
BfmI CTRYAG 1 cut(s) 151
BfuAI ACCTGC 1 cut(s) 158
BisI GCNGC 1 cut(s) 154
BlsI GCNGC 1 cut(s) 155
Bme1390I CCNGG 1 cut(s) 373
Bme18I GGWCC 1 cut(s) 523
BmeRI GACNNNNNGTC 1 cut(s) 486
BmgT120I GGNCC 2 cut(s) 212, 523
BmiI GGNNCC 1 cut(s) 525
BmrFI CCNGG 1 cut(s) 373
BmsI GCATC 1 cut(s) 194
BpmI CTGGAG 1 cut(s) 532
BpuEI CTTGAG 1 cut(s) 581
BpuMI CCSGG 1 cut(s) 373
BsaAI YACGTR 1 cut(s) 406
BsaJI CCNNGG 3 cut(s) 69, 388, 540
BsaWI WCCGGW 1 cut(s) 461
Bsc4I CCNNNNNNNGG 3 cut(s) 352, 500, 520
BseDI CCNNGG 3 cut(s) 69, 388, 540
BseLI CCNNNNNNNGG 3 cut(s) 352, 500, 520
BseRI GAGGAG 1 cut(s) 148
BseSI GKGCMC 2 cut(s) 204, 428
BseXI GCAGC 1 cut(s) 165
BshFI GGCC 4 cut(s) 74, 214, 356, 545
BsiHKAI GWGCWC 1 cut(s) 204
BsiSI CCGG 2 cut(s) 373, 462
BslI CCNNNNNNNGG 3 cut(s) 352, 500, 520
BsmAI GTCTC 1 cut(s) 27
BsnI GGCC 4 cut(s) 74, 214, 356, 545
Bsp1286I GDGCHC 2 cut(s) 204, 428
Bsp143I GATC 3 cut(s) 121, 337, 535
BspACI CCGC 1 cut(s) 127
BspANI GGCC 4 cut(s) 74, 214, 356, 545
BspLI GGNNCC 1 cut(s) 525
BspMAI CTGCAG 1 cut(s) 155
BspMI ACCTGC 1 cut(s) 158
BspPI GGATC 3 cut(s) 116, 345, 530
BsrBI CCGCTC 1 cut(s) 129
BssECI CCNNGG 3 cut(s) 69, 388, 540
BssMI GATC 3 cut(s) 121, 337, 535
BssT1I CCWWGG 2 cut(s) 69, 388
Bst4CI ACNGT 2 cut(s) 118, 415
BstAPI GCANNNNNTGC 1 cut(s) 585
BstBAI YACGTR 1 cut(s) 406
BstC8I GCNNGC 2 cut(s) 397, 502
BstDEI CTNAG 1 cut(s) 341
BstKTI GATC 3 cut(s) 124, 340, 538
BstMAI GTCTC 1 cut(s) 27
BstMBI GATC 3 cut(s) 121, 337, 535
BstMWI GCNNNNNNNGC 1 cut(s) 585
BstSCI CCNGG 1 cut(s) 371
BstSFI CTRYAG 1 cut(s) 151
BstSLI GKGCMC 2 cut(s) 204, 428
BstV1I GCAGC 1 cut(s) 165
BstX2I RGATCY 1 cut(s) 337
BstYI RGATCY 1 cut(s) 337
BsuRI GGCC 4 cut(s) 74, 214, 356, 545
BveI ACCTGC 1 cut(s) 158
Cac8I GCNNGC 2 cut(s) 397, 502
Cfr13I GGNCC 2 cut(s) 212, 523
CseI GACGC 1 cut(s) 577
CviAII CATG 3 cut(s) 209, 216, 627
DdeI CTNAG 1 cut(s) 341
DpnI GATC 3 cut(s) 123, 339, 537
DpnII GATC 3 cut(s) 121, 337, 535
DriI GACNNNNNGTC 1 cut(s) 486
EaeI YGGCCR 1 cut(s) 72
Eam1105I GACNNNNNGTC 1 cut(s) 486
Eco130I CCWWGG 2 cut(s) 69, 388
Eco47I GGWCC 1 cut(s) 523
EcoO109I RGGNCCY 1 cut(s) 523
EcoRI GAATTC 1 cut(s) 104
EcoT14I CCWWGG 2 cut(s) 69, 388
ErhI CCWWGG 2 cut(s) 69, 388
FaeI CATG 3 cut(s) 212, 219, 630
FaiI YATR 6 cut(s) 34, 210, 217, 556, 558, 628
FalI AAGNNNNNCTT 2 cut(s) 81, 113
FatI CATG 3 cut(s) 208, 215, 626
FauI CCCGC 1 cut(s) 134
Fnu4HI GCNGC 1 cut(s) 154
Fsp4HI GCNGC 1 cut(s) 154
FspBI CTAG 2 cut(s) 269, 620
GluI GCNGC 1 cut(s) 154
GsuI CTGGAG 1 cut(s) 532
HaeIII GGCC 4 cut(s) 74, 214, 356, 545
HapII CCGG 2 cut(s) 373, 462
HgaI GACGC 1 cut(s) 577
Hin1II CATG 3 cut(s) 212, 219, 630
HincII GTYRAC 2 cut(s) 292, 491
HindII GTYRAC 2 cut(s) 292, 491
HinfI GANTC 4 cut(s) 83, 253, 288, 481
HpaII CCGG 2 cut(s) 373, 462
HphI GGTGA 2 cut(s) 100, 421
Hpy166II GTNNAC 3 cut(s) 202, 292, 491
Hpy188III TCNNGA 4 cut(s) 191, 269, 367, 598
Hpy8I GTNNAC 3 cut(s) 202, 292, 491
HpyAV CCTTC 2 cut(s) 175, 346
HpyCH4III ACNGT 2 cut(s) 118, 415
HpyCH4IV ACGT 1 cut(s) 405
HpyCH4V TGCA 3 cut(s) 153, 202, 395
HpyF10VI GCNNNNNNNGC 1 cut(s) 585
HpyF3I CTNAG 1 cut(s) 341
HpySE526I ACGT 1 cut(s) 405
Hsp92II CATG 3 cut(s) 212, 219, 630
Kzo9I GATC 3 cut(s) 121, 337, 535
LmnI GCTCC 1 cut(s) 161
LpnPI CCDG 8 cut(s) 50, 163, 320, 386, 397, 475, 486, 562
Lsp1109I GCAGC 1 cut(s) 165
LweI GCATC 1 cut(s) 194
MaeI CTAG 2 cut(s) 269, 620
MaeII ACGT 1 cut(s) 405
MaeIII GTNAC 1 cut(s) 409
MalI GATC 3 cut(s) 123, 339, 537
MbiI CCGCTC 1 cut(s) 129
MboI GATC 3 cut(s) 121, 337, 535
MflI RGATCY 1 cut(s) 337
MhlI GDGCHC 2 cut(s) 204, 428
MluCI AATT 5 cut(s) 7, 104, 264, 320, 452
MlyI GAGTC 2 cut(s) 297, 475
MmeI TCCRAC 1 cut(s) 616
MnlI CCTC 8 cut(s) 53, 169, 171, 240, 328, 374, 550, 556
MslI CAYNNNNRTG 1 cut(s) 207
MspI CCGG 2 cut(s) 373, 462
MspR9I CCNGG 1 cut(s) 373
MwoI GCNNNNNNNGC 1 cut(s) 585
NciI CCSGG 1 cut(s) 373
NdeII GATC 3 cut(s) 121, 337, 535
NlaIII CATG 3 cut(s) 212, 219, 630
NlaIV GGNNCC 1 cut(s) 525
NmeAIII GCCGAG 1 cut(s) 521
NmuCI GTSAC 1 cut(s) 409
PfeI GAWTC 2 cut(s) 83, 253
PflFI GACNNNGTC 1 cut(s) 587
PkrI GCNGC 1 cut(s) 155
PleI GAGTC 2 cut(s) 296, 475
PpsI GAGTC 2 cut(s) 296, 475
Ppu21I YACGTR 1 cut(s) 406
PpuMI RGGWCCY 1 cut(s) 523
Psp5II RGGWCCY 1 cut(s) 523
PspN4I GGNNCC 1 cut(s) 525
PspPI GGNCC 2 cut(s) 212, 523
PspPPI RGGWCCY 1 cut(s) 523
PstI CTGCAG 1 cut(s) 155
PsuI RGATCY 1 cut(s) 337
PsyI GACNNNGTC 1 cut(s) 587
RseI CAYNNNNRTG 1 cut(s) 207
SatI GCNGC 1 cut(s) 154
Sau3AI GATC 3 cut(s) 121, 337, 535
Sau96I GGNCC 2 cut(s) 212, 523
SchI GAGTC 2 cut(s) 297, 475
ScrFI CCNGG 1 cut(s) 373
SduI GDGCHC 2 cut(s) 204, 428
SfaNI GCATC 1 cut(s) 194
SfcI CTRYAG 1 cut(s) 151
SinI GGWCC 1 cut(s) 523
SmiMI CAYNNNNRTG 1 cut(s) 207
SmlI CTYRAG 1 cut(s) 596
SmoI CTYRAG 1 cut(s) 596
Sse9I AATT 5 cut(s) 7, 104, 264, 320, 452
SsiI CCGC 1 cut(s) 127
SspMI CTAG 2 cut(s) 269, 620
StyD4I CCNGG 1 cut(s) 371
StyI CCWWGG 2 cut(s) 69, 388
TaaI ACNGT 2 cut(s) 118, 415
TaiI ACGT 1 cut(s) 408
TaqI TCGA 3 cut(s) 350, 450, 534
TasI AATT 5 cut(s) 7, 104, 264, 320, 452
TfiI GAWTC 2 cut(s) 83, 253
TseFI GTSAC 1 cut(s) 409
TseI GCWGC 1 cut(s) 153
Tsp45I GTSAC 1 cut(s) 409
Tth111I GACNNNGTC 1 cut(s) 587
VneI GTGCAC 1 cut(s) 200
VpaK11BI GGWCC 1 cut(s) 523
XapI RAATTY 4 cut(s) 7, 104, 264, 452
XbaI TCTAGA 1 cut(s) 268
XspI CTAG 2 cut(s) 269, 620
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.