Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0017644

Physical Location & Seq

Genomic Coordinates Forward (+)

3347782 .. 3354593

Gene Structure 6812 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG035400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGTATCGAAATATGGTCTTCAATCGGTCATCTCTACTTAACACAACAGCTAGTATGATACTCTTACCTGTTTTTGTCTTGCTCTCTACATATTTATATTGGCTGCTTTATTATTCTGGCTTGCCATGGGTCCTCTCTCTTGCAGCTGGTGTGTCTGCTGCTGTTAACACGGTTCGGACTACAAATACTAAGAGAATGAAGGAGAAGGTTAGGGATTTGGGGAAACCTAATTGGGTTGTACAAGTTGAACAAGTCGCGGCCACGAAACTAGTCAAGGTAGCTGATATTGGGTTATCAATTGAGAGTAATTTTAGTGAGAATGCTCAGGGAAGAACTACAGCTTCTGCAAGAGCCTGCACAAAGATCTCACAAAACAATCCTAAAGATTGTTTCCTGCATGTGGAGTTCGAGAGTCAAGGCCTAGAGTCCCAAGCCAAGCCCGAAGGTCGGTTTGTGTGCTGGTGGGTCAACGACTACTGCTTGGGCAGTAAAGTGAAGCTTTCAAATGAAAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005975 GO:0006066 GO:0006793 GO:0006796 GO:0006950 GO:0007154 GO:0007165 GO:0007275 GO:0007584 GO:0008150 GO:0008152 GO:0009056 GO:0009314 GO:0009416 GO:0009605 GO:0009606 GO:0009611 GO:0009628 GO:0009629 GO:0009630 GO:0009637 GO:0009719 GO:0009725 GO:0009737 GO:0009743 GO:0009756 GO:0009846 GO:0009856 GO:0009888 GO:0009987 GO:0009991 GO:0010033 GO:0010087 GO:0010182 GO:0010252 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019637 GO:0019751 GO:0022414 GO:0022622 GO:0023052 GO:0031667 GO:0032501 GO:0032502 GO:0033993 GO:0042221 GO:0042578 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043647 GO:0044237 GO:0044238 GO:0044262 GO:0044281 GO:0044282 GO:0044424 GO:0044464 GO:0044706 GO:0046030 GO:0046164 GO:0046174 GO:0046434 GO:0046838 GO:0046855 GO:0048364 GO:0048731 GO:0048856 GO:0048878 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051716 GO:0052658 GO:0052745 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071322 GO:0071545 GO:0071704 GO:0097305 GO:0099402 GO:1901575 GO:1901615 GO:1901616 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko00562 ko01100 ko04070 map00562 map01100 map04070

Pfam Domains

Protein Families

Exo_endo_phos

Protein Analysis

171

Amino Acids

19.15

Weight (kDa)

9.23

Isoelectric Point (pI)

30.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017644)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g08261
malus_domestica	MD15G1044300.v1.1
pyrus_communis	pycom15g04120
rosa_laevigata	RLG00000009074 RLG00000009077
rosa_samantha	Rh4AG113400 Rh4AG113700 Rh4AG113900 Rh4BG106100 Rh4CG120500 Rh4DG105400 Rh6CG035400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	257
AciI	CCGC	1 cut(s)	257
AcoI	YGGCCR	1 cut(s)	258
AfaI	GTAC	1 cut(s)	240
AfiI	CCNNNNNNNGG	2 cut(s)	400, 447
AgsI	TTSAA	3 cut(s)	22, 248, 504
AhlI	ACTAGT	1 cut(s)	268
AluBI	AGCT	5 cut(s)	50, 146, 281, 341, 499
AluI	AGCT	5 cut(s)	50, 146, 281, 341, 499
AlwNI	CAGNNNCTG	1 cut(s)	344
AoxI	GGCC	2 cut(s)	258, 418
ApeKI	GCWGC	3 cut(s)	103, 143, 158
AspS9I	GGNCC	1 cut(s)	130
AvaII	GGWCC	1 cut(s)	130
BbsI	GAAGAC	1 cut(s)	10
BbvI	GCAGC	3 cut(s)	90, 145, 155
BcuI	ACTAGT	1 cut(s)	268
BfaI	CTAG	3 cut(s)	51, 269, 422
BfmI	CTRYAG	1 cut(s)	336
BglII	AGATCT	1 cut(s)	363
BisI	GCNGC	4 cut(s)	104, 144, 159, 258
BlsI	GCNGC	4 cut(s)	105, 145, 160, 259
Bme18I	GGWCC	1 cut(s)	130
BmgT120I	GGNCC	1 cut(s)	130
BmiI	GGNNCC	1 cut(s)	131
BpiI	GAAGAC	1 cut(s)	10
Bpu10I	CCTNAGC	1 cut(s)	324
BsaJI	CCNNGG	1 cut(s)	125
Bsc4I	CCNNNNNNNGG	2 cut(s)	400, 447
BseDI	CCNNGG	1 cut(s)	125
BseLI	CCNNNNNNNGG	2 cut(s)	400, 447
BseMII	CTCAG	1 cut(s)	338
BseXI	GCAGC	3 cut(s)	90, 145, 155
BsgI	GTGCAG	1 cut(s)	340
Bsh1236I	CGCG	1 cut(s)	257
BshFI	GGCC	2 cut(s)	260, 420
BslFI	GGGAC	1 cut(s)	412
BslI	CCNNNNNNNGG	2 cut(s)	400, 447
BsmFI	GGGAC	1 cut(s)	412
BsmI	GAATGC	1 cut(s)	325
BsnI	GGCC	2 cut(s)	260, 420
Bsp1407I	TGTACA	1 cut(s)	238
Bsp143I	GATC	1 cut(s)	363
Bsp19I	CCATGG	1 cut(s)	125
BspACI	CCGC	1 cut(s)	257
BspANI	GGCC	2 cut(s)	260, 420
BspCNI	CTCAG	1 cut(s)	337
BspFNI	CGCG	1 cut(s)	257
BspLI	GGNNCC	1 cut(s)	131
BsrGI	TGTACA	1 cut(s)	238
BssECI	CCNNGG	1 cut(s)	125
BssMI	GATC	1 cut(s)	363
BssT1I	CCWWGG	1 cut(s)	125
Bst4CI	ACNGT	1 cut(s)	172
BstAUI	TGTACA	1 cut(s)	238
BstC8I	GCNNGC	2 cut(s)	122, 355
BstDEI	CTNAG	2 cut(s)	189, 324
BstDSI	CCRYGG	1 cut(s)	125
BstFNI	CGCG	1 cut(s)	257
BstKTI	GATC	1 cut(s)	366
BstMBI	GATC	1 cut(s)	363
BstNSI	RCATGY	1 cut(s)	401
BstSFI	CTRYAG	1 cut(s)	336
BstUI	CGCG	1 cut(s)	257
BstV1I	GCAGC	3 cut(s)	90, 145, 155
BstV2I	GAAGAC	1 cut(s)	10
BstX2I	RGATCY	1 cut(s)	363
BstYI	RGATCY	1 cut(s)	363
BsuRI	GGCC	2 cut(s)	260, 420
BtgI	CCRYGG	1 cut(s)	125
Cac8I	GCNNGC	2 cut(s)	122, 355
CaiI	CAGNNNCTG	1 cut(s)	344
Cfr13I	GGNCC	1 cut(s)	130
Csp6I	GTAC	1 cut(s)	239
CviAII	CATG	2 cut(s)	126, 398
CviQI	GTAC	1 cut(s)	239
DdeI	CTNAG	2 cut(s)	189, 324
DpnI	GATC	1 cut(s)	365
DpnII	GATC	1 cut(s)	363
EaeI	YGGCCR	1 cut(s)	258
Eco130I	CCWWGG	1 cut(s)	125
Eco147I	AGGCCT	1 cut(s)	420
Eco47I	GGWCC	1 cut(s)	130
EcoO109I	RGGNCCY	1 cut(s)	130
EcoT14I	CCWWGG	1 cut(s)	125
ErhI	CCWWGG	1 cut(s)	125
FaeI	CATG	2 cut(s)	129, 401
FaiI	YATR	6 cut(s)	14, 56, 91, 97, 127, 399
FalI	AAGNNNNNCTT	2 cut(s)	483, 515
FaqI	GGGAC	1 cut(s)	412
FatI	CATG	2 cut(s)	125, 397
Fnu4HI	GCNGC	4 cut(s)	104, 144, 159, 258
Fsp4HI	GCNGC	4 cut(s)	104, 144, 159, 258
FspBI	CTAG	3 cut(s)	51, 269, 422
GluI	GCNGC	4 cut(s)	104, 144, 159, 258
HaeIII	GGCC	2 cut(s)	260, 420
Hin1II	CATG	2 cut(s)	129, 401
HincII	GTYRAC	2 cut(s)	166, 469
HindII	GTYRAC	2 cut(s)	166, 469
HindIII	AAGCTT	1 cut(s)	497
HinfI	GANTC	2 cut(s)	412, 425
HpaI	GTTAAC	1 cut(s)	166
Hpy166II	GTNNAC	2 cut(s)	166, 469
Hpy188I	TCNGA	1 cut(s)	177
Hpy188III	TCNNGA	1 cut(s)	409
Hpy8I	GTNNAC	2 cut(s)	166, 469
HpyAV	CCTTC	3 cut(s)	193, 199, 437
HpyCH4III	ACNGT	1 cut(s)	172
HpyCH4V	TGCA	4 cut(s)	143, 347, 357, 397
HpyF3I	CTNAG	2 cut(s)	189, 324
Hsp92II	CATG	2 cut(s)	129, 401
KspAI	GTTAAC	1 cut(s)	166
Kzo9I	GATC	1 cut(s)	363
LpnPI	CCDG	7 cut(s)	81, 102, 132, 311, 367, 407, 445
Lsp1109I	GCAGC	3 cut(s)	90, 145, 155
MaeI	CTAG	3 cut(s)	51, 269, 422
MalI	GATC	1 cut(s)	365
MboI	GATC	1 cut(s)	363
MboII	GAAGA	2 cut(s)	10, 342
MfeI	CAATTG	1 cut(s)	297
MflI	RGATCY	1 cut(s)	363
MluCI	AATT	3 cut(s)	229, 297, 307
MlyI	GAGTC	2 cut(s)	421, 434
MnlI	CCTC	1 cut(s)	143
MseI	TTAA	2 cut(s)	39, 165
MspA1I	CMGCKG	1 cut(s)	146
MunI	CAATTG	1 cut(s)	297
Mva1269I	GAATGC	1 cut(s)	325
MvnI	CGCG	1 cut(s)	257
NcoI	CCATGG	1 cut(s)	125
NdeII	GATC	1 cut(s)	363
NlaIII	CATG	2 cut(s)	129, 401
NlaIV	GGNNCC	1 cut(s)	131
NspI	RCATGY	1 cut(s)	401
PceI	AGGCCT	1 cut(s)	420
PctI	GAATGC	1 cut(s)	325
PkrI	GCNGC	4 cut(s)	105, 145, 160, 259
PleI	GAGTC	2 cut(s)	420, 433
PpsI	GAGTC	2 cut(s)	420, 433
PpuMI	RGGWCCY	1 cut(s)	130
Psp5II	RGGWCCY	1 cut(s)	130
PspN4I	GGNNCC	1 cut(s)	131
PspPI	GGNCC	1 cut(s)	130
PspPPI	RGGWCCY	1 cut(s)	130
PstNI	CAGNNNCTG	1 cut(s)	344
PsuI	RGATCY	1 cut(s)	363
PvuII	CAGCTG	1 cut(s)	146
RsaI	GTAC	1 cut(s)	240
RsaNI	GTAC	1 cut(s)	239
SaqAI	TTAA	2 cut(s)	39, 165
SatI	GCNGC	4 cut(s)	104, 144, 159, 258
Sau3AI	GATC	1 cut(s)	363
Sau96I	GGNCC	1 cut(s)	130
SchI	GAGTC	2 cut(s)	421, 434
SfcI	CTRYAG	1 cut(s)	336
SinI	GGWCC	1 cut(s)	130
SpeI	ACTAGT	1 cut(s)	268
Sse9I	AATT	3 cut(s)	229, 297, 307
SseBI	AGGCCT	1 cut(s)	420
SsiI	CCGC	1 cut(s)	257
SspMI	CTAG	3 cut(s)	51, 269, 422
StuI	AGGCCT	1 cut(s)	420
StyI	CCWWGG	1 cut(s)	125
TaaI	ACNGT	1 cut(s)	172
TaqI	TCGA	2 cut(s)	7, 408
TaqII	GACCGA	1 cut(s)	15
TasI	AATT	3 cut(s)	229, 297, 307
TatI	WGTACW	1 cut(s)	238
TauI	GCSGC	1 cut(s)	260
Tru1I	TTAA	2 cut(s)	39, 165
Tru9I	TTAA	2 cut(s)	39, 165
TseI	GCWGC	3 cut(s)	103, 143, 158
TspDTI	ATGAA	1 cut(s)	212
VpaK11BI	GGWCC	1 cut(s)	130
XceI	RCATGY	1 cut(s)	401
XspI	CTAG	3 cut(s)	51, 269, 422

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.