Rh4DG105400

Belongs to the peptidase A1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0017644
Physical Location & Seq
Forward (+)
16222002 .. 16222736
735 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG105400.1

Sequence Viewer

Length: 636 bp
ATGAGGTATTTCACCGGTTTGTCTCTAATTCTAAGCCTGACTCTGTGTTCTTTGGACAAGGGCTTCGCCTTAGCAGAAGGAGATTCAAAAGAACGTCTCCTTCATCAACAATACACCCACACAGTTGATCTCCGATCTCTACTGCCAGCAACCACCTGCAGCCCCTCCACCAGAGGTAATAAAAGGATGGCATCTCTTGAAGTGGTACACAAGCATGGGCCATGCTCTCATCTTCCTCAACTCAAAGCGACTGCTATGAATCACACTCTAATTCTCGAGCAAGACCAAGCGCGAGTCAACTCAATCAACTCCCGGATTTCAAAGAAATTGAACGGCAATGAGGATCTAAGCCAATCGGAGGCCACCACCGTTCCGGCCCGGTGGGCAAGCAGCCAAAATGCAGGCAACTACATGGTGACGGTGGGATTGGGCACACCTAAAAAACAACTTTCGATCATATTTGACACCGGAAGCGACCTCACTTGGACTCAATGCCAACCTTGTTCTGAATTTTGCTACCCACAAGAGGAGCCCATTTTCGATCCCTCGGCCTCTTCCTCATATACCAACGTTTCCTGTAACAGCACAGAGTGCGTCCAACTCAGGACATCTACGGGTACATACCTAGAACCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04071 ko04140 ko04142 ko04210 ko04915 ko05152 map04071 map04140 map04142 map04210 map04915 map05152
Pfam Domains
Protein Families
TAXi_C TAXi_N

Protein Analysis

211

Amino Acids

23.19

Weight (kDa)

6.58

Isoelectric Point (pI)

45.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Asp PF00026 136 - 191 2.1e-09 Eukaryotic aspartyl protease
TAXi_N PF14543 137 - 201 4.1e-22 Xylanase inhibitor N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017644)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g08261
malus_domestica MD15G1044300.v1.1
pyrus_communis pycom15g04120
rosa_laevigata RLG00000009074 RLG00000009077
rosa_samantha Rh4AG113400 Rh4AG113700 Rh4AG113900 Rh4BG106100 Rh4CG120500 Rh4DG105400 Rh6CG035400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 164
Acc36I ACCTGC 1 cut(s) 164
AccII CGCG 1 cut(s) 292
AclI AACGTT 1 cut(s) 570
AclWI GGATC 2 cut(s) 351, 536
AcsI RAATTY 1 cut(s) 509
AdeI CACNNNGTG 1 cut(s) 591
AfaI GTAC 2 cut(s) 207, 619
AfiI CCNNNNNNNGG 2 cut(s) 358, 526
AgeI ACCGGT 1 cut(s) 14
AgsI TTSAA 4 cut(s) 87, 200, 321, 331
Alw26I GTCTC 2 cut(s) 27, 101
AlwI GGATC 2 cut(s) 351, 536
Ama87I CYCGRG 1 cut(s) 275
AoxI GGCC 4 cut(s) 218, 360, 375, 549
ApeKI GCWGC 2 cut(s) 159, 390
ApoI RAATTY 1 cut(s) 509
ArsI GACNNNNNNTTYG 2 cut(s) 47, 79
AsiGI ACCGGT 1 cut(s) 14
AspLEI GCGC 1 cut(s) 292
AspS9I GGNCC 2 cut(s) 218, 376
AsuC2I CCSGG 2 cut(s) 313, 379
AsuHPI GGTGA 2 cut(s) 4, 427
AvaI CYCGRG 1 cut(s) 275
BaeGI GKGCMC 1 cut(s) 434
BanII GRGCYC 1 cut(s) 534
BbvI GCAGC 2 cut(s) 171, 402
BccI CCATC 1 cut(s) 181
BceAI ACGGC 1 cut(s) 349
BcnI CCSGG 2 cut(s) 313, 379
BcoDI GTCTC 2 cut(s) 27, 101
BfaI CTAG 1 cut(s) 626
BfmI CTRYAG 1 cut(s) 157
BfuAI ACCTGC 1 cut(s) 164
BglI GCCNNNNNGGC 1 cut(s) 383
BisI GCNGC 2 cut(s) 160, 391
BlsI GCNGC 2 cut(s) 161, 392
Bme1390I CCNGG 2 cut(s) 313, 379
BmeT110I CYCGRG 1 cut(s) 275
BmgT120I GGNCC 2 cut(s) 218, 376
BmiI GGNNCC 1 cut(s) 531
BmrFI CCNGG 2 cut(s) 313, 379
BmsI GCATC 1 cut(s) 200
Bpu10I CCTNAGC 1 cut(s) 70
BpuMI CCSGG 2 cut(s) 313, 379
BsaJI CCNNGG 1 cut(s) 546
BsaWI WCCGGW 2 cut(s) 14, 467
Bsc4I CCNNNNNNNGG 2 cut(s) 358, 526
Bse118I RCCGGY 1 cut(s) 14
Bse3DI GCAATG 1 cut(s) 343
BseDI CCNNGG 1 cut(s) 546
BseGI GGATG 1 cut(s) 192
BseLI CCNNNNNNNGG 2 cut(s) 358, 526
BseMI GCAATG 1 cut(s) 343
BseMII CTCAG 1 cut(s) 616
BseRI GAGGAG 1 cut(s) 542
BseSI GKGCMC 1 cut(s) 434
BseXI GCAGC 2 cut(s) 171, 402
Bsh1236I CGCG 1 cut(s) 292
BshFI GGCC 4 cut(s) 220, 362, 377, 551
BshTI ACCGGT 1 cut(s) 14
BsiHKCI CYCGRG 1 cut(s) 275
BsiSI CCGG 5 cut(s) 15, 313, 374, 379, 468
BslI CCNNNNNNNGG 2 cut(s) 358, 526
BsmAI GTCTC 2 cut(s) 27, 101
BsmBI CGTCTC 1 cut(s) 101
BsnI GGCC 4 cut(s) 220, 362, 377, 551
BsoBI CYCGRG 1 cut(s) 275
Bsp1286I GDGCHC 2 cut(s) 434, 534
Bsp143I GATC 5 cut(s) 127, 134, 343, 453, 541
BspANI GGCC 4 cut(s) 220, 362, 377, 551
BspCNI CTCAG 1 cut(s) 615
BspFNI CGCG 1 cut(s) 292
BspLI GGNNCC 1 cut(s) 531
BspMAI CTGCAG 1 cut(s) 161
BspMI ACCTGC 1 cut(s) 164
BspPI GGATC 2 cut(s) 351, 536
BsrDI GCAATG 1 cut(s) 343
BsrFI RCCGGY 1 cut(s) 14
BssAI RCCGGY 1 cut(s) 14
BssECI CCNNGG 1 cut(s) 546
BssMI GATC 5 cut(s) 127, 134, 343, 453, 541
Bst4CI ACNGT 3 cut(s) 124, 370, 421
Bst6I CTCTTC 1 cut(s) 559
BstAPI GCANNNNNTGC 1 cut(s) 591
BstC8I GCNNGC 3 cut(s) 147, 388, 403
BstDEI CTNAG 4 cut(s) 32, 70, 347, 602
BstF5I GGATG 1 cut(s) 192
BstFNI CGCG 1 cut(s) 292
BstHHI GCGC 1 cut(s) 292
BstKTI GATC 5 cut(s) 130, 137, 346, 456, 544
BstMAI GTCTC 2 cut(s) 27, 101
BstMBI GATC 5 cut(s) 127, 134, 343, 453, 541
BstMWI GCNNNNNNNGC 2 cut(s) 383, 591
BstSCI CCNGG 2 cut(s) 311, 377
BstSFI CTRYAG 1 cut(s) 157
BstSLI GKGCMC 1 cut(s) 434
BstUI CGCG 1 cut(s) 292
BstV1I GCAGC 2 cut(s) 171, 402
BstX2I RGATCY 1 cut(s) 343
BstYI RGATCY 1 cut(s) 343
BsuRI GGCC 4 cut(s) 220, 362, 377, 551
BtsCI GGATG 1 cut(s) 192
BveI ACCTGC 1 cut(s) 164
Cac8I GCNNGC 3 cut(s) 147, 388, 403
CfoI GCGC 1 cut(s) 292
Cfr10I RCCGGY 1 cut(s) 14
Cfr13I GGNCC 2 cut(s) 218, 376
CseI GACGC 1 cut(s) 583
Csp6I GTAC 2 cut(s) 206, 618
CspAI ACCGGT 1 cut(s) 14
CviAII CATG 4 cut(s) 215, 222, 412, 633
CviQI GTAC 2 cut(s) 206, 618
DdeI CTNAG 4 cut(s) 32, 70, 347, 602
DpnI GATC 5 cut(s) 129, 136, 345, 455, 543
DpnII GATC 5 cut(s) 127, 134, 343, 453, 541
DraIII CACNNNGTG 1 cut(s) 591
Eam1104I CTCTTC 1 cut(s) 559
EarI CTCTTC 1 cut(s) 559
Eco24I GRGCYC 1 cut(s) 534
Eco88I CYCGRG 1 cut(s) 275
EcoT38I GRGCYC 1 cut(s) 534
Esp3I CGTCTC 1 cut(s) 101
FaeI CATG 4 cut(s) 218, 225, 415, 636
FaiI YATR 9 cut(s) 216, 223, 257, 413, 458, 562, 564, 622, 634
FatI CATG 4 cut(s) 214, 221, 411, 632
Fnu4HI GCNGC 2 cut(s) 160, 391
FokI GGATG 1 cut(s) 199
FriOI GRGCYC 1 cut(s) 534
Fsp4HI GCNGC 2 cut(s) 160, 391
FspBI CTAG 1 cut(s) 626
GlaI GCGC 1 cut(s) 291
GluI GCNGC 2 cut(s) 160, 391
HaeIII GGCC 4 cut(s) 220, 362, 377, 551
HapII CCGG 5 cut(s) 15, 313, 374, 379, 468
HgaI GACGC 1 cut(s) 583
HhaI GCGC 1 cut(s) 292
Hin1II CATG 4 cut(s) 218, 225, 415, 636
Hin6I GCGC 1 cut(s) 290
HinP1I GCGC 1 cut(s) 290
HincII GTYRAC 1 cut(s) 298
HindII GTYRAC 1 cut(s) 298
HinfI GANTC 5 cut(s) 40, 83, 259, 294, 487
HpaII CCGG 5 cut(s) 15, 313, 374, 379, 468
HphI GGTGA 2 cut(s) 4, 427
Hpy166II GTNNAC 2 cut(s) 208, 298
Hpy188I TCNGA 3 cut(s) 134, 358, 508
Hpy188III TCNNGA 3 cut(s) 197, 275, 604
Hpy8I GTNNAC 2 cut(s) 208, 298
HpyAV CCTTC 2 cut(s) 71, 110
HpyCH4III ACNGT 3 cut(s) 124, 370, 421
HpyCH4IV ACGT 2 cut(s) 94, 570
HpyCH4V TGCA 2 cut(s) 159, 401
HpyF10VI GCNNNNNNNGC 2 cut(s) 383, 591
HpyF3I CTNAG 4 cut(s) 32, 70, 347, 602
HpySE526I ACGT 2 cut(s) 94, 570
Hsp92II CATG 4 cut(s) 218, 225, 415, 636
HspAI GCGC 1 cut(s) 290
Kzo9I GATC 5 cut(s) 127, 134, 343, 453, 541
LmnI GCTCC 1 cut(s) 529
Lsp1109I GCAGC 2 cut(s) 171, 402
LweI GCATC 1 cut(s) 200
MaeI CTAG 1 cut(s) 626
MaeII ACGT 2 cut(s) 94, 570
MaeIII GTNAC 2 cut(s) 415, 578
MalI GATC 5 cut(s) 129, 136, 345, 455, 543
MboI GATC 5 cut(s) 127, 134, 343, 453, 541
MboII GAAGA 2 cut(s) 224, 546
MflI RGATCY 1 cut(s) 343
MhlI GDGCHC 2 cut(s) 434, 534
MluCI AATT 4 cut(s) 27, 270, 326, 509
MlyI GAGTC 3 cut(s) 34, 303, 481
MmeI TCCRAC 1 cut(s) 622
MslI CAYNNNNRTG 1 cut(s) 213
MspI CCGG 5 cut(s) 15, 313, 374, 379, 468
MspR9I CCNGG 2 cut(s) 313, 379
MvnI CGCG 1 cut(s) 292
MwoI GCNNNNNNNGC 2 cut(s) 383, 591
NciI CCSGG 2 cut(s) 313, 379
NdeII GATC 5 cut(s) 127, 134, 343, 453, 541
NlaIII CATG 4 cut(s) 218, 225, 415, 636
NlaIV GGNNCC 1 cut(s) 531
NmeAIII GCCGAG 1 cut(s) 527
NmuCI GTSAC 1 cut(s) 415
PaeR7I CTCGAG 1 cut(s) 275
PaqCI CACCTGC 1 cut(s) 164
PfeI GAWTC 2 cut(s) 83, 259
PfoI TCCNGGA 1 cut(s) 311
PinAI ACCGGT 1 cut(s) 14
PkrI GCNGC 2 cut(s) 161, 392
PleI GAGTC 3 cut(s) 34, 302, 481
PpsI GAGTC 3 cut(s) 34, 302, 481
Psp1406I AACGTT 1 cut(s) 570
PspN4I GGNNCC 1 cut(s) 531
PspPI GGNCC 2 cut(s) 218, 376
PstI CTGCAG 1 cut(s) 161
PsuI RGATCY 1 cut(s) 343
RsaI GTAC 2 cut(s) 207, 619
RsaNI GTAC 2 cut(s) 206, 618
RseI CAYNNNNRTG 1 cut(s) 213
SatI GCNGC 2 cut(s) 160, 391
Sau3AI GATC 5 cut(s) 127, 134, 343, 453, 541
Sau96I GGNCC 2 cut(s) 218, 376
SchI GAGTC 3 cut(s) 34, 303, 481
ScrFI CCNGG 2 cut(s) 313, 379
SduI GDGCHC 2 cut(s) 434, 534
SetI ASST 9 cut(s) 8, 97, 158, 178, 439, 480, 502, 573, 627
SfaNI GCATC 1 cut(s) 200
SfcI CTRYAG 1 cut(s) 157
Sfr274I CTCGAG 1 cut(s) 275
SlaI CTCGAG 1 cut(s) 275
SmiMI CAYNNNNRTG 1 cut(s) 213
SmlI CTYRAG 1 cut(s) 275
SmoI CTYRAG 1 cut(s) 275
Sse9I AATT 4 cut(s) 27, 270, 326, 509
SspMI CTAG 1 cut(s) 626
StyD4I CCNGG 2 cut(s) 311, 377
TaaI ACNGT 3 cut(s) 124, 370, 421
TaiI ACGT 2 cut(s) 97, 573
TaqI TCGA 3 cut(s) 276, 452, 540
TasI AATT 4 cut(s) 27, 270, 326, 509
TfiI GAWTC 2 cut(s) 83, 259
TseFI GTSAC 1 cut(s) 415
TseI GCWGC 2 cut(s) 159, 390
Tsp45I GTSAC 1 cut(s) 415
TspDTI ATGAA 2 cut(s) 92, 272
XapI RAATTY 1 cut(s) 509
XhoI CTCGAG 1 cut(s) 275
XspI CTAG 1 cut(s) 626
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.