Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0016821

Physical Location & Seq

Genomic Coordinates Forward (+)

15091974 .. 15093388

Gene Structure 1415 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g11310.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGAATCCCTCAAACAATTCTCATCCTCCTCCTCCTACTCCACAAGTATTTCACAACTTCATGCCTACGTCTTCCTCTCTGCTACCCGACTCCACCCAAGAGGAGGCTGAAGCGGCTAGATGCACCAATCTTGTCCAACTGGAGAAGAATAATGTGCAGCTGTTTTGTGTCAAGGAGTTACCATCAACTACCTCTTGCTCGGGTGAAAGGATTATGAAATCAAATGATGTGGTCAAGATGATCAGTTCAGAGACTCCGATCTTGTTCTCGAAAGCATGTGAGCTGTTCATAATGGAGCTTACTCTTCGGGCGTGGCTTCAGACAGAAGCAAGCAAGAAGCGAACACTGCAGAAATGTGACATTGCCAAGGCTATCAGGAAGGATCAACTTCTTCATCATTTCTTGGCTCCTATTGTTCTCTGTACTCTCCATTACGACCACGATGATGATGACGACAGCGAAAATGCCACTCCAAGAAAGAAAAGAGTTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0005737 GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016602 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044798 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0090575 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04612 ko05152 map04612 map05152

Pfam Domains

Protein Families

CBFD_NFYB_HMF

Protein Analysis

165

Amino Acids

18.55

Weight (kDa)

6.06

Isoelectric Point (pI)

56.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CBFD_NFYB_HMF	PF00808	69 - 125	9.1e-11	Histone-like transcription factor (CBF/NF-Y) and archaeal histone
Histone	PF00125	71 - 127	9.6e-12	Core histone H2A/H2B/H3/H4 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0016821)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g11310
malus_domestica	MD17G1250700.v1.1
prunus_persica	Prupe.3G149300_v2.0.a1
pyrus_communis	pycom09g17270 pycom14g13000 pycom17g25460
rosa_chinensis	RchiOBHm_Chr4g0407551
rosa_laevigata	RLG00000008711
rosa_roxburghii	Rroxscaffold_5G00352170
rosa_rugosa	Rorug04G0080300
rosa_samantha	Rh4AG145000 Rh4BG142900 Rh4CG151700 Rh4DG138900

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	113
AclWI	GGATC	1 cut(s)	390
AcuI	CTGAAG	2 cut(s)	129, 302
AfaI	GTAC	1 cut(s)	424
AfiI	CCNNNNNNNGG	1 cut(s)	103
AluBI	AGCT	3 cut(s)	160, 283, 298
AluI	AGCT	3 cut(s)	160, 283, 298
Alw26I	GTCTC	1 cut(s)	245
AlwI	GGATC	1 cut(s)	390
Ama87I	CYCGRG	1 cut(s)	199
ApeKI	GCWGC	1 cut(s)	157
AsuHPI	GGTGA	1 cut(s)	215
AvaI	CYCGRG	1 cut(s)	199
BbsI	GAAGAC	1 cut(s)	63
BbvI	GCAGC	1 cut(s)	169
BccI	CCATC	1 cut(s)	190
BclI	TGATCA	1 cut(s)	240
BcoDI	GTCTC	1 cut(s)	245
BfaI	CTAG	1 cut(s)	117
BfmI	CTRYAG	1 cut(s)	347
BisI	GCNGC	2 cut(s)	114, 158
BlsI	GCNGC	2 cut(s)	115, 159
BmeT110I	CYCGRG	1 cut(s)	199
BmiI	GGNNCC	1 cut(s)	408
BmsI	GCATC	1 cut(s)	110
BpiI	GAAGAC	1 cut(s)	63
BpmI	CTGGAG	1 cut(s)	161
BsaJI	CCNNGG	1 cut(s)	366
Bsc4I	CCNNNNNNNGG	1 cut(s)	103
Bse1I	ACTGG	1 cut(s)	144
Bse3DI	GCAATG	1 cut(s)	360
BseDI	CCNNGG	1 cut(s)	366
BseGI	GGATG	1 cut(s)	22
BseLI	CCNNNNNNNGG	1 cut(s)	103
BseMI	GCAATG	1 cut(s)	360
BseNI	ACTGG	1 cut(s)	144
BseRI	GAGGAG	3 cut(s)	18, 21, 116
BseXI	GCAGC	1 cut(s)	169
BsgI	GTGCAG	1 cut(s)	176
BsiHKCI	CYCGRG	1 cut(s)	199
BslI	CCNNNNNNNGG	1 cut(s)	103
BsmAI	GTCTC	1 cut(s)	245
BsoBI	CYCGRG	1 cut(s)	199
Bsp143I	GATC	3 cut(s)	240, 258, 382
BspACI	CCGC	1 cut(s)	113
BspLI	GGNNCC	1 cut(s)	408
BspMAI	CTGCAG	1 cut(s)	351
BspPI	GGATC	1 cut(s)	390
BsrDI	GCAATG	1 cut(s)	360
BsrI	ACTGG	1 cut(s)	144
BssECI	CCNNGG	1 cut(s)	366
BssMI	GATC	3 cut(s)	240, 258, 382
BssT1I	CCWWGG	1 cut(s)	366
Bst6I	CTCTTC	1 cut(s)	309
BstC8I	GCNNGC	1 cut(s)	331
BstF5I	GGATG	1 cut(s)	22
BstKTI	GATC	3 cut(s)	243, 261, 385
BstMAI	GTCTC	1 cut(s)	245
BstMBI	GATC	3 cut(s)	240, 258, 382
BstMWI	GCNNNNNNNGC	2 cut(s)	113, 346
BstNSI	RCATGY	1 cut(s)	279
BstSFI	CTRYAG	1 cut(s)	347
BstV1I	GCAGC	1 cut(s)	169
BstV2I	GAAGAC	1 cut(s)	63
BtsCI	GGATG	1 cut(s)	22
BtsI	GCAGTG	1 cut(s)	344
BtsIMutI	CAGTG	1 cut(s)	344
Cac8I	GCNNGC	1 cut(s)	331
Csp6I	GTAC	1 cut(s)	423
CspCI	CAANNNNNGTGG	2 cut(s)	210, 245
CviAII	CATG	2 cut(s)	61, 276
CviJI	RGCY	8 cut(s)	107, 116, 160, 283, 298, 316, 371, 407
CviKI_1	RGCY	8 cut(s)	107, 116, 160, 283, 298, 316, 371, 407
CviQI	GTAC	1 cut(s)	423
DpnI	GATC	3 cut(s)	242, 260, 384
DpnII	GATC	3 cut(s)	240, 258, 382
Eam1104I	CTCTTC	1 cut(s)	309
EarI	CTCTTC	1 cut(s)	309
Eco130I	CCWWGG	1 cut(s)	366
Eco57I	CTGAAG	2 cut(s)	129, 302
Eco88I	CYCGRG	1 cut(s)	199
EcoT14I	CCWWGG	1 cut(s)	366
ErhI	CCWWGG	1 cut(s)	366
FaeI	CATG	2 cut(s)	64, 279
FaiI	YATR	4 cut(s)	62, 215, 277, 290
FatI	CATG	2 cut(s)	60, 275
FbaI	TGATCA	1 cut(s)	240
Fnu4HI	GCNGC	2 cut(s)	114, 158
FokI	GGATG	1 cut(s)	9
Fsp4HI	GCNGC	2 cut(s)	114, 158
FspBI	CTAG	1 cut(s)	117
GluI	GCNGC	2 cut(s)	114, 158
GsuI	CTGGAG	1 cut(s)	161
Hin1II	CATG	2 cut(s)	64, 279
HinfI	GANTC	3 cut(s)	4, 89, 253
HphI	GGTGA	1 cut(s)	215
Hpy188I	TCNGA	3 cut(s)	250, 258, 321
Hpy188III	TCNNGA	3 cut(s)	235, 268, 376
HpyAV	CCTTC	1 cut(s)	373
HpyCH4IV	ACGT	1 cut(s)	68
HpyCH4V	TGCA	3 cut(s)	123, 157, 349
HpyF10VI	GCNNNNNNNGC	2 cut(s)	113, 346
HpySE526I	ACGT	1 cut(s)	68
Hsp92II	CATG	2 cut(s)	64, 279
Ksp22I	TGATCA	1 cut(s)	240
Kzo9I	GATC	3 cut(s)	240, 258, 382
LmnI	GCTCC	2 cut(s)	295, 412
LpnPI	CCDG	2 cut(s)	125, 361
Lsp1109I	GCAGC	1 cut(s)	169
LweI	GCATC	1 cut(s)	110
MaeI	CTAG	1 cut(s)	117
MaeII	ACGT	1 cut(s)	68
MaeIII	GTNAC	2 cut(s)	177, 356
MalI	GATC	3 cut(s)	242, 260, 384
MboI	GATC	3 cut(s)	240, 258, 382
MboII	GAAGA	4 cut(s)	63, 157, 296, 383
MluCI	AATT	1 cut(s)	16
MlyI	GAGTC	2 cut(s)	83, 247
MmeI	TCCRAC	1 cut(s)	160
MnlI	CCTC	8 cut(s)	19, 36, 39, 42, 85, 94, 97, 202
MslI	CAYNNNNRTG	1 cut(s)	444
MspA1I	CMGCKG	1 cut(s)	160
MwoI	GCNNNNNNNGC	2 cut(s)	113, 346
NdeII	GATC	3 cut(s)	240, 258, 382
NlaIII	CATG	2 cut(s)	64, 279
NlaIV	GGNNCC	1 cut(s)	408
NmuCI	GTSAC	1 cut(s)	356
NspI	RCATGY	1 cut(s)	279
PfeI	GAWTC	1 cut(s)	4
PkrI	GCNGC	2 cut(s)	115, 159
PleI	GAGTC	2 cut(s)	83, 247
PpsI	GAGTC	2 cut(s)	83, 247
PspN4I	GGNNCC	1 cut(s)	408
PstI	CTGCAG	1 cut(s)	351
PvuII	CAGCTG	1 cut(s)	160
RsaI	GTAC	1 cut(s)	424
RsaNI	GTAC	1 cut(s)	423
RseI	CAYNNNNRTG	1 cut(s)	444
SatI	GCNGC	2 cut(s)	114, 158
Sau3AI	GATC	3 cut(s)	240, 258, 382
SchI	GAGTC	2 cut(s)	83, 247
SetI	ASST	5 cut(s)	71, 162, 194, 285, 300
SfaNI	GCATC	1 cut(s)	110
SfcI	CTRYAG	1 cut(s)	347
SmiMI	CAYNNNNRTG	1 cut(s)	444
Sse9I	AATT	1 cut(s)	16
SsiI	CCGC	1 cut(s)	113
SspMI	CTAG	1 cut(s)	117
StyI	CCWWGG	1 cut(s)	366
TaiI	ACGT	1 cut(s)	71
TaqI	TCGA	1 cut(s)	269
TasI	AATT	1 cut(s)	16
TatI	WGTACW	1 cut(s)	422
TauI	GCSGC	1 cut(s)	116
TfiI	GAWTC	1 cut(s)	4
TscAI	CASTG	1 cut(s)	351
TseFI	GTSAC	1 cut(s)	356
TseI	GCWGC	1 cut(s)	157
Tsp45I	GTSAC	1 cut(s)	356
TspDTI	ATGAA	5 cut(s)	17, 49, 230, 277, 383
TspRI	CASTG	1 cut(s)	351
XceI	RCATGY	1 cut(s)	279
XspI	CTAG	1 cut(s)	117

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.