Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0016821

Physical Location & Seq

Genomic Coordinates Forward (+)

29161487 .. 29162947

Gene Structure 1461 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00352170.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGAATCTCTCAAACAATTCTTACCCACCTACTCCACAAGTTTTGCACGACTTCAAGCCTATGCCTTCCTCCCAAGAGGAGACTGAAGCGGCTAGACGAAACAATTTTATCCAACTGCAGATAAATAATGTGCAGCTGTTTTGGAATAAGCAATTGCTCGAGATTCACAATACATCAGTGTCTAGGAGTTGCCATCAACTACCTCTTTCGCGGGTGAAAAGGATTATGAAATCAAATGGAGTGGTCAAGCTGATCAGTTCAGAGATTCCGATCTTGTTCTCGAAAGCATGTGAGCTATTCATAATGGAGCTTACACTTGGGGCATGGCTTCAGGCAGAAGTAAGCAAGAGGCGAACATTGCAGAAGTGTGACATTGCCAAGGCTATTAGGAACGATCAACTTCTTCACAATTTCTTGGCTCCTATAGTTCTCTGTACTCTCCACGACCACGAGGGGGAGAACGAGAACGAGGTAGAGATTCTGGGTGACCCTCCATCAATACCTCACTCTCGTGATGAATTCATTTGCCTTGCAGTGAGAAACTGCGTACGTGCTGGAGATAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0005737 GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016602 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044798 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0090575 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04612 ko05152 map04612 map05152

Pfam Domains

Protein Families

CBFD_NFYB_HMF

Protein Analysis

188

Amino Acids

21.43

Weight (kDa)

7.04

Isoelectric Point (pI)

63.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Histone	PF00125	59 - 130	3.9e-14	Core histone H2A/H2B/H3/H4 domain
CBFD_NFYB_HMF	PF00808	66 - 129	4.9e-13	Histone-like transcription factor (CBF/NF-Y) and archaeal histone

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0016821)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g11310
malus_domestica	MD17G1250700.v1.1
prunus_persica	Prupe.3G149300_v2.0.a1
pyrus_communis	pycom09g17270 pycom14g13000 pycom17g25460
rosa_chinensis	RchiOBHm_Chr4g0407551
rosa_laevigata	RLG00000008711
rosa_roxburghii	Rroxscaffold_5G00352170
rosa_rugosa	Rorug04G0080300
rosa_samantha	Rh4AG145000 Rh4BG142900 Rh4CG151700 Rh4DG138900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	211
AciI	CCGC	2 cut(s)	89, 211
AcsI	RAATTY	1 cut(s)	518
AcuI	CTGAAG	2 cut(s)	105, 314
AfaI	GTAC	2 cut(s)	436, 549
AfiI	CCNNNNNNNGG	1 cut(s)	454
AgsI	TTSAA	1 cut(s)	55
AleI	CACNNNNGTG	1 cut(s)	510
AluBI	AGCT	4 cut(s)	136, 250, 295, 310
AluI	AGCT	4 cut(s)	136, 250, 295, 310
Alw26I	GTCTC	1 cut(s)	74
Ama87I	CYCGRG	1 cut(s)	158
ApeKI	GCWGC	1 cut(s)	133
ApoI	RAATTY	1 cut(s)	518
AsuHPI	GGTGA	2 cut(s)	226, 497
AvaI	CYCGRG	1 cut(s)	158
BauI	CACGAG	2 cut(s)	449, 510
BbvI	GCAGC	1 cut(s)	145
BccI	CCATC	2 cut(s)	201, 502
BclI	TGATCA	1 cut(s)	252
BcoDI	GTCTC	1 cut(s)	74
BfaI	CTAG	2 cut(s)	93, 183
BfmI	CTRYAG	2 cut(s)	116, 423
BisI	GCNGC	2 cut(s)	90, 134
BlsI	GCNGC	2 cut(s)	91, 135
BmeT110I	CYCGRG	1 cut(s)	158
BmiI	GGNNCC	1 cut(s)	420
BsaAI	YACGTR	1 cut(s)	551
BsaBI	GATNNNNATC	1 cut(s)	269
BsaJI	CCNNGG	1 cut(s)	378
Bsc4I	CCNNNNNNNGG	1 cut(s)	454
Bse3DI	GCAATG	2 cut(s)	356, 372
Bse8I	GATNNNNATC	1 cut(s)	269
BseDI	CCNNGG	1 cut(s)	378
BseJI	GATNNNNATC	1 cut(s)	269
BseLI	CCNNNNNNNGG	1 cut(s)	454
BseMI	GCAATG	2 cut(s)	356, 372
BseRI	GAGGAG	1 cut(s)	92
BseXI	GCAGC	1 cut(s)	145
BsgI	GTGCAG	1 cut(s)	152
Bsh1236I	CGCG	1 cut(s)	211
BsiHKCI	CYCGRG	1 cut(s)	158
BsiWI	CGTACG	1 cut(s)	547
BslI	CCNNNNNNNGG	1 cut(s)	454
BsmAI	GTCTC	1 cut(s)	74
BsoBI	CYCGRG	1 cut(s)	158
Bsp143I	GATC	3 cut(s)	252, 270, 394
BspACI	CCGC	2 cut(s)	89, 211
BspFNI	CGCG	1 cut(s)	211
BspLI	GGNNCC	1 cut(s)	420
BspMAI	CTGCAG	1 cut(s)	120
BsrDI	GCAATG	2 cut(s)	356, 372
BssECI	CCNNGG	1 cut(s)	378
BssMI	GATC	3 cut(s)	252, 270, 394
BssSI	CACGAG	2 cut(s)	449, 510
BssT1I	CCWWGG	1 cut(s)	378
Bst2BI	CACGAG	2 cut(s)	449, 510
BstBAI	YACGTR	1 cut(s)	551
BstEII	GGTNACC	1 cut(s)	485
BstFNI	CGCG	1 cut(s)	211
BstKTI	GATC	3 cut(s)	255, 273, 397
BstMAI	GTCTC	1 cut(s)	74
BstMBI	GATC	3 cut(s)	252, 270, 394
BstMWI	GCNNNNNNNGC	1 cut(s)	358
BstNSI	RCATGY	1 cut(s)	291
BstPI	GGTNACC	1 cut(s)	485
BstSFI	CTRYAG	2 cut(s)	116, 423
BstUI	CGCG	1 cut(s)	211
BstV1I	GCAGC	1 cut(s)	145
BtsI	GCAGTG	1 cut(s)	540
BtsIMutI	CAGTG	2 cut(s)	183, 540
Csp6I	GTAC	2 cut(s)	435, 548
CspCI	CAANNNNNGTGG	4 cut(s)	24, 59, 222, 257
CviAII	CATG	2 cut(s)	288, 324
CviJI	RGCY	9 cut(s)	58, 92, 136, 250, 295, 310, 328, 383, 419
CviKI_1	RGCY	9 cut(s)	58, 92, 136, 250, 295, 310, 328, 383, 419
CviQI	GTAC	2 cut(s)	435, 548
DpnI	GATC	3 cut(s)	254, 272, 396
DpnII	GATC	3 cut(s)	252, 270, 394
Eco130I	CCWWGG	1 cut(s)	378
Eco57I	CTGAAG	2 cut(s)	105, 314
Eco88I	CYCGRG	1 cut(s)	158
Eco91I	GGTNACC	1 cut(s)	485
EcoO65I	GGTNACC	1 cut(s)	485
EcoRI	GAATTC	1 cut(s)	518
EcoT14I	CCWWGG	1 cut(s)	378
ErhI	CCWWGG	1 cut(s)	378
FaeI	CATG	2 cut(s)	291, 327
FaiI	YATR	6 cut(s)	62, 227, 289, 302, 325, 425
FatI	CATG	2 cut(s)	287, 323
FauI	CCCGC	1 cut(s)	204
FbaI	TGATCA	1 cut(s)	252
Fnu4HI	GCNGC	2 cut(s)	90, 134
Fsp4HI	GCNGC	2 cut(s)	90, 134
FspBI	CTAG	2 cut(s)	93, 183
GluI	GCNGC	2 cut(s)	90, 134
Hin1II	CATG	2 cut(s)	291, 327
HinfI	GANTC	4 cut(s)	4, 163, 265, 478
HphI	GGTGA	2 cut(s)	226, 497
Hpy188I	TCNGA	2 cut(s)	262, 270
Hpy188III	TCNNGA	3 cut(s)	160, 280, 512
HpyAV	CCTTC	1 cut(s)	75
HpyCH4IV	ACGT	1 cut(s)	550
HpyCH4V	TGCA	5 cut(s)	46, 118, 133, 361, 533
HpyF10VI	GCNNNNNNNGC	1 cut(s)	358
HpySE526I	ACGT	1 cut(s)	550
Hsp92II	CATG	2 cut(s)	291, 327
Ksp22I	TGATCA	1 cut(s)	252
Kzo9I	GATC	3 cut(s)	252, 270, 394
LmnI	GCTCC	2 cut(s)	307, 424
LpnPI	CCDG	3 cut(s)	317, 467, 540
Lsp1109I	GCAGC	1 cut(s)	145
MaeI	CTAG	2 cut(s)	93, 183
MaeII	ACGT	1 cut(s)	550
MaeIII	GTNAC	2 cut(s)	368, 485
MalI	GATC	3 cut(s)	254, 272, 396
MboI	GATC	3 cut(s)	252, 270, 394
MboII	GAAGA	1 cut(s)	395
MfeI	CAATTG	1 cut(s)	152
MluCI	AATT	5 cut(s)	16, 103, 152, 409, 518
MmeI	TCCRAC	1 cut(s)	136
MnlI	CCTC	8 cut(s)	70, 79, 213, 342, 445, 463, 501, 513
MslI	CAYNNNNRTG	1 cut(s)	510
MspA1I	CMGCKG	1 cut(s)	136
MunI	CAATTG	1 cut(s)	152
MvnI	CGCG	1 cut(s)	211
MwoI	GCNNNNNNNGC	1 cut(s)	358
NdeII	GATC	3 cut(s)	252, 270, 394
NlaIII	CATG	2 cut(s)	291, 327
NlaIV	GGNNCC	1 cut(s)	420
NmuCI	GTSAC	2 cut(s)	368, 485
NspI	RCATGY	1 cut(s)	291
OliI	CACNNNNGTG	1 cut(s)	510
PaeR7I	CTCGAG	1 cut(s)	158
PfeI	GAWTC	4 cut(s)	4, 163, 265, 478
Pfl23II	CGTACG	1 cut(s)	547
PkrI	GCNGC	2 cut(s)	91, 135
Ppu21I	YACGTR	1 cut(s)	551
PspEI	GGTNACC	1 cut(s)	485
PspLI	CGTACG	1 cut(s)	547
PspN4I	GGNNCC	1 cut(s)	420
PstI	CTGCAG	1 cut(s)	120
PvuII	CAGCTG	1 cut(s)	136
RsaI	GTAC	2 cut(s)	436, 549
RsaNI	GTAC	2 cut(s)	435, 548
RseI	CAYNNNNRTG	1 cut(s)	510
SatI	GCNGC	2 cut(s)	90, 134
Sau3AI	GATC	3 cut(s)	252, 270, 394
SetI	ASST	9 cut(s)	31, 138, 205, 252, 297, 312, 474, 505, 553
SfcI	CTRYAG	2 cut(s)	116, 423
Sfr274I	CTCGAG	1 cut(s)	158
SlaI	CTCGAG	1 cut(s)	158
SmiMI	CAYNNNNRTG	1 cut(s)	510
SmlI	CTYRAG	1 cut(s)	158
SmoI	CTYRAG	1 cut(s)	158
Sse9I	AATT	5 cut(s)	16, 103, 152, 409, 518
SsiI	CCGC	2 cut(s)	89, 211
SspMI	CTAG	2 cut(s)	93, 183
StyI	CCWWGG	1 cut(s)	378
TaiI	ACGT	1 cut(s)	553
TaqI	TCGA	2 cut(s)	159, 281
TasI	AATT	5 cut(s)	16, 103, 152, 409, 518
TatI	WGTACW	1 cut(s)	434
TauI	GCSGC	1 cut(s)	92
TfiI	GAWTC	4 cut(s)	4, 163, 265, 478
TscAI	CASTG	2 cut(s)	183, 540
TseFI	GTSAC	2 cut(s)	368, 485
TseI	GCWGC	1 cut(s)	133
Tsp45I	GTSAC	2 cut(s)	368, 485
TspDTI	ATGAA	5 cut(s)	17, 242, 289, 511, 531
TspRI	CASTG	2 cut(s)	183, 540
XapI	RAATTY	1 cut(s)	518
XceI	RCATGY	1 cut(s)	291
XhoI	CTCGAG	1 cut(s)	158
XspI	CTAG	2 cut(s)	93, 183

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.