Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0016821

Physical Location & Seq

Genomic Coordinates Forward (+)

33486381 .. 33487760

Gene Structure 1380 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG151700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGCCTTCCTCCCAAGAGGAGGCTGAAGCGGCTAGACGAAATAATTTTGTCCAACTGCAGATGAATAATGTGCAGCTGTTTTGGAATAAGCAATTGCTCGAGATTCACAATACTTCAGTGTCTAGGAGTTGCCATCAACTACCTCTTGCGCGGGTGAAAAGGATTATGAAATCAAATGGAGTGGTCAAGATGATCAGTTCAGAGACTCCGATCTTGTTCTCGAAAGCATGTGAGCTATTCATAATGGAGCTTACACTTCGGGCATGGCTTCAGGCAGAAGTAAGCAAGAGGCGAACATTGCAGAAGTGTGACATTGCCAAGGCTATTAGGAACGATCAACTTCTTCACAATTTCTTGGCTCCTATTGTTCTCTGTACTCTCCATGACCACGAGGGCGAGAACGAGAACGAGGTAGAGATTCTAGGTGACCCTTCATCAATGTCCTCCGCTCCTGGTTTTCCTTCCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0005737 GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016602 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044798 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0090575 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04612 ko05152 map04612 map05152

Pfam Domains

Protein Families

CBFD_NFYB_HMF

Protein Analysis

156

Amino Acids

17.71

Weight (kDa)

7.73

Isoelectric Point (pI)

80.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Histone	PF00125	39 - 110	1.8e-16	Core histone H2A/H2B/H3/H4 domain
CBFD_NFYB_HMF	PF00808	46 - 109	1.5e-14	Histone-like transcription factor (CBF/NF-Y) and archaeal histone

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0016821)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g11310
malus_domestica	MD17G1250700.v1.1
prunus_persica	Prupe.3G149300_v2.0.a1
pyrus_communis	pycom09g17270 pycom14g13000 pycom17g25460
rosa_chinensis	RchiOBHm_Chr4g0407551
rosa_laevigata	RLG00000008711
rosa_roxburghii	Rroxscaffold_5G00352170
rosa_rugosa	Rorug04G0080300
rosa_samantha	Rh4AG145000 Rh4BG142900 Rh4CG151700 Rh4DG138900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	449
AccII	CGCG	1 cut(s)	151
AciI	CCGC	3 cut(s)	29, 151, 447
AcuI	CTGAAG	3 cut(s)	45, 99, 254
AfaI	GTAC	1 cut(s)	376
AfiI	CCNNNNNNNGG	1 cut(s)	19
AjnI	CCWGG	1 cut(s)	451
AluBI	AGCT	3 cut(s)	76, 235, 250
AluI	AGCT	3 cut(s)	76, 235, 250
Alw26I	GTCTC	1 cut(s)	197
Ama87I	CYCGRG	1 cut(s)	98
ApeKI	GCWGC	1 cut(s)	73
AspLEI	GCGC	1 cut(s)	151
AsuHPI	GGTGA	2 cut(s)	166, 437
AvaI	CYCGRG	1 cut(s)	98
BauI	CACGAG	1 cut(s)	389
BbvI	GCAGC	1 cut(s)	85
BccI	CCATC	1 cut(s)	141
BciT130I	CCWGG	1 cut(s)	453
BclI	TGATCA	1 cut(s)	192
BcoDI	GTCTC	1 cut(s)	197
BfaI	CTAG	3 cut(s)	33, 123, 422
BfmI	CTRYAG	1 cut(s)	56
BisI	GCNGC	2 cut(s)	30, 74
BlsI	GCNGC	2 cut(s)	31, 75
Bme1390I	CCNGG	1 cut(s)	453
BmeT110I	CYCGRG	1 cut(s)	98
BmiI	GGNNCC	1 cut(s)	360
BmrFI	CCNGG	1 cut(s)	453
BsaJI	CCNNGG	1 cut(s)	318
Bsc4I	CCNNNNNNNGG	1 cut(s)	19
Bse3DI	GCAATG	2 cut(s)	296, 312
BseBI	CCWGG	1 cut(s)	453
BseDI	CCNNGG	1 cut(s)	318
BseLI	CCNNNNNNNGG	1 cut(s)	19
BseMI	GCAATG	2 cut(s)	296, 312
BseRI	GAGGAG	1 cut(s)	32
BseXI	GCAGC	1 cut(s)	85
BsgI	GTGCAG	1 cut(s)	92
Bsh1236I	CGCG	1 cut(s)	151
BsiHKCI	CYCGRG	1 cut(s)	98
BslI	CCNNNNNNNGG	1 cut(s)	19
BsmAI	GTCTC	1 cut(s)	197
BsoBI	CYCGRG	1 cut(s)	98
Bsp143I	GATC	3 cut(s)	192, 210, 334
BspACI	CCGC	3 cut(s)	29, 151, 447
BspFNI	CGCG	1 cut(s)	151
BspLI	GGNNCC	1 cut(s)	360
BspMAI	CTGCAG	1 cut(s)	60
BsrBI	CCGCTC	1 cut(s)	449
BsrDI	GCAATG	2 cut(s)	296, 312
BssECI	CCNNGG	1 cut(s)	318
BssMI	GATC	3 cut(s)	192, 210, 334
BssSI	CACGAG	1 cut(s)	389
BssT1I	CCWWGG	1 cut(s)	318
Bst2BI	CACGAG	1 cut(s)	389
Bst2UI	CCWGG	1 cut(s)	453
BstEII	GGTNACC	1 cut(s)	425
BstFNI	CGCG	1 cut(s)	151
BstHHI	GCGC	1 cut(s)	151
BstKTI	GATC	3 cut(s)	195, 213, 337
BstMAI	GTCTC	1 cut(s)	197
BstMBI	GATC	3 cut(s)	192, 210, 334
BstMWI	GCNNNNNNNGC	2 cut(s)	29, 298
BstNI	CCWGG	1 cut(s)	453
BstNSI	RCATGY	1 cut(s)	231
BstPI	GGTNACC	1 cut(s)	425
BstSCI	CCNGG	1 cut(s)	451
BstSFI	CTRYAG	1 cut(s)	56
BstUI	CGCG	1 cut(s)	151
BstV1I	GCAGC	1 cut(s)	85
BtsIMutI	CAGTG	1 cut(s)	123
CfoI	GCGC	1 cut(s)	151
Csp6I	GTAC	1 cut(s)	375
CspCI	CAANNNNNGTGG	2 cut(s)	162, 197
CviAII	CATG	3 cut(s)	228, 264, 383
CviJI	RGCY	8 cut(s)	23, 32, 76, 235, 250, 268, 323, 359
CviKI_1	RGCY	8 cut(s)	23, 32, 76, 235, 250, 268, 323, 359
CviQI	GTAC	1 cut(s)	375
DpnI	GATC	3 cut(s)	194, 212, 336
DpnII	GATC	3 cut(s)	192, 210, 334
Eco130I	CCWWGG	1 cut(s)	318
Eco57I	CTGAAG	3 cut(s)	45, 99, 254
Eco88I	CYCGRG	1 cut(s)	98
Eco91I	GGTNACC	1 cut(s)	425
EcoO65I	GGTNACC	1 cut(s)	425
EcoRII	CCWGG	1 cut(s)	451
EcoT14I	CCWWGG	1 cut(s)	318
ErhI	CCWWGG	1 cut(s)	318
FaeI	CATG	3 cut(s)	231, 267, 386
FaiI	YATR	5 cut(s)	167, 229, 242, 265, 384
FatI	CATG	3 cut(s)	227, 263, 382
FauI	CCCGC	1 cut(s)	144
FbaI	TGATCA	1 cut(s)	192
Fnu4HI	GCNGC	2 cut(s)	30, 74
Fsp4HI	GCNGC	2 cut(s)	30, 74
FspBI	CTAG	3 cut(s)	33, 123, 422
GlaI	GCGC	1 cut(s)	150
GluI	GCNGC	2 cut(s)	30, 74
HhaI	GCGC	1 cut(s)	151
Hin1II	CATG	3 cut(s)	231, 267, 386
Hin6I	GCGC	1 cut(s)	149
HinP1I	GCGC	1 cut(s)	149
HinfI	GANTC	3 cut(s)	103, 205, 418
HphI	GGTGA	2 cut(s)	166, 437
Hpy188I	TCNGA	2 cut(s)	202, 210
Hpy188III	TCNNGA	3 cut(s)	100, 187, 220
HpyAV	CCTTC	3 cut(s)	15, 441, 471
HpyCH4V	TGCA	3 cut(s)	58, 73, 301
HpyF10VI	GCNNNNNNNGC	2 cut(s)	29, 298
Hsp92II	CATG	3 cut(s)	231, 267, 386
HspAI	GCGC	1 cut(s)	149
Ksp22I	TGATCA	1 cut(s)	192
Kzo9I	GATC	3 cut(s)	192, 210, 334
LmnI	GCTCC	3 cut(s)	247, 364, 454
LpnPI	CCDG	3 cut(s)	257, 438, 465
Lsp1109I	GCAGC	1 cut(s)	85
MaeI	CTAG	3 cut(s)	33, 123, 422
MaeIII	GTNAC	2 cut(s)	308, 425
MalI	GATC	3 cut(s)	194, 212, 336
MbiI	CCGCTC	1 cut(s)	449
MboI	GATC	3 cut(s)	192, 210, 334
MboII	GAAGA	1 cut(s)	335
MfeI	CAATTG	1 cut(s)	92
MluCI	AATT	3 cut(s)	43, 92, 349
MlyI	GAGTC	1 cut(s)	199
MmeI	TCCRAC	1 cut(s)	76
MnlI	CCTC	8 cut(s)	10, 13, 19, 153, 282, 385, 403, 454
MspA1I	CMGCKG	1 cut(s)	76
MspR9I	CCNGG	1 cut(s)	453
MunI	CAATTG	1 cut(s)	92
MvaI	CCWGG	1 cut(s)	453
MvnI	CGCG	1 cut(s)	151
MwoI	GCNNNNNNNGC	2 cut(s)	29, 298
NdeII	GATC	3 cut(s)	192, 210, 334
NlaIII	CATG	3 cut(s)	231, 267, 386
NlaIV	GGNNCC	1 cut(s)	360
NmuCI	GTSAC	2 cut(s)	308, 425
NspI	RCATGY	1 cut(s)	231
PaeR7I	CTCGAG	1 cut(s)	98
PfeI	GAWTC	2 cut(s)	103, 418
PkrI	GCNGC	2 cut(s)	31, 75
PleI	GAGTC	1 cut(s)	199
PpsI	GAGTC	1 cut(s)	199
Psp6I	CCWGG	1 cut(s)	451
PspEI	GGTNACC	1 cut(s)	425
PspGI	CCWGG	1 cut(s)	451
PspN4I	GGNNCC	1 cut(s)	360
PstI	CTGCAG	1 cut(s)	60
PvuII	CAGCTG	1 cut(s)	76
RsaI	GTAC	1 cut(s)	376
RsaNI	GTAC	1 cut(s)	375
SatI	GCNGC	2 cut(s)	30, 74
Sau3AI	GATC	3 cut(s)	192, 210, 334
SchI	GAGTC	1 cut(s)	199
ScrFI	CCNGG	1 cut(s)	453
SetI	ASST	6 cut(s)	78, 145, 237, 252, 414, 427
SfcI	CTRYAG	1 cut(s)	56
Sfr274I	CTCGAG	1 cut(s)	98
SlaI	CTCGAG	1 cut(s)	98
SmlI	CTYRAG	1 cut(s)	98
SmoI	CTYRAG	1 cut(s)	98
Sse9I	AATT	3 cut(s)	43, 92, 349
SsiI	CCGC	3 cut(s)	29, 151, 447
SspMI	CTAG	3 cut(s)	33, 123, 422
StyD4I	CCNGG	1 cut(s)	451
StyI	CCWWGG	1 cut(s)	318
TaqI	TCGA	2 cut(s)	99, 221
TasI	AATT	3 cut(s)	43, 92, 349
TatI	WGTACW	1 cut(s)	374
TauI	GCSGC	1 cut(s)	32
TfiI	GAWTC	2 cut(s)	103, 418
TscAI	CASTG	1 cut(s)	123
TseFI	GTSAC	2 cut(s)	308, 425
TseI	GCWGC	1 cut(s)	73
Tsp45I	GTSAC	2 cut(s)	308, 425
TspDTI	ATGAA	4 cut(s)	77, 182, 229, 423
TspRI	CASTG	1 cut(s)	123
XceI	RCATGY	1 cut(s)	231
XhoI	CTCGAG	1 cut(s)	98
XspI	CTAG	3 cut(s)	33, 123, 422

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.