Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0016821

Physical Location & Seq

Genomic Coordinates Forward (+)

29801562 .. 29802044

Gene Structure 483 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ37878

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

ATGCATGTAAAAACAGTGTCTAGGAGTTGCCATCAACTACCTCTTGCGCGGGTGAAAAGGATTATGAAATCAAATGGAGTGGCCAAGATGATCAGTTCAGAGACTCCGATCTTGTTCTCGAAAGCATGTGAGCTATTCATAATGGAGCTTACCCTTCGGGCATGGCTTCAGGCAGAAGTAAGCAAGAGGCGAACATTGCAGAAGTGTGACATTGCCAAGGCTATTAGGAACGATCAACTTCTTCACAATTTCTTGGCTCCTATTGTTTTCTGTACTCTCCATGACCACGAGGGCGAGAACAAGAACGAGGTAGAGATTCTAGGTGACCCTTCATCAATGTCCTCCGCTCCTGGTTTTCCTTCCAAGGTATGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0005737 GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016602 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044798 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0090575 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04612 ko05152 map04612 map05152

Pfam Domains

Protein Families

CBFD_NFYB_HMF

Protein Analysis

124

Amino Acids

13.92

Weight (kDa)

9.12

Isoelectric Point (pI)

76.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Histone	PF00125	5 - 76	1.9e-16	Core histone H2A/H2B/H3/H4 domain
CBFD_NFYB_HMF	PF00808	12 - 75	4.9e-15	Histone-like transcription factor (CBF/NF-Y) and archaeal histone

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0016821)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g11310
malus_domestica	MD17G1250700.v1.1
prunus_persica	Prupe.3G149300_v2.0.a1
pyrus_communis	pycom09g17270 pycom14g13000 pycom17g25460
rosa_chinensis	RchiOBHm_Chr4g0407551
rosa_laevigata	RLG00000008711
rosa_roxburghii	Rroxscaffold_5G00352170
rosa_rugosa	Rorug04G0080300
rosa_samantha	Rh4AG145000 Rh4BG142900 Rh4CG151700 Rh4DG138900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	347
AccII	CGCG	1 cut(s)	49
AciI	CCGC	2 cut(s)	49, 345
AcoI	YGGCCR	1 cut(s)	81
AcuI	CTGAAG	1 cut(s)	152
AfaI	GTAC	1 cut(s)	274
AjnI	CCWGG	1 cut(s)	349
AluBI	AGCT	2 cut(s)	133, 148
AluI	AGCT	2 cut(s)	133, 148
Alw26I	GTCTC	1 cut(s)	95
AoxI	GGCC	1 cut(s)	81
AspLEI	GCGC	1 cut(s)	49
AsuHPI	GGTGA	2 cut(s)	64, 335
BalI	TGGCCA	1 cut(s)	83
BauI	CACGAG	1 cut(s)	287
BccI	CCATC	1 cut(s)	39
BciT130I	CCWGG	1 cut(s)	351
BclI	TGATCA	1 cut(s)	90
BcoDI	GTCTC	1 cut(s)	95
BfaI	CTAG	2 cut(s)	21, 320
Bme1390I	CCNGG	1 cut(s)	351
BmiI	GGNNCC	1 cut(s)	258
BmrFI	CCNGG	1 cut(s)	351
BsaJI	CCNNGG	2 cut(s)	216, 363
Bse3DI	GCAATG	2 cut(s)	194, 210
BseBI	CCWGG	1 cut(s)	351
BseDI	CCNNGG	2 cut(s)	216, 363
BseMI	GCAATG	2 cut(s)	194, 210
Bsh1236I	CGCG	1 cut(s)	49
BshFI	GGCC	1 cut(s)	83
BsmAI	GTCTC	1 cut(s)	95
BsnI	GGCC	1 cut(s)	83
Bsp143I	GATC	3 cut(s)	90, 108, 232
BspACI	CCGC	2 cut(s)	49, 345
BspANI	GGCC	1 cut(s)	83
BspFNI	CGCG	1 cut(s)	49
BspLI	GGNNCC	1 cut(s)	258
BsrBI	CCGCTC	1 cut(s)	347
BsrDI	GCAATG	2 cut(s)	194, 210
BssECI	CCNNGG	2 cut(s)	216, 363
BssMI	GATC	3 cut(s)	90, 108, 232
BssSI	CACGAG	1 cut(s)	287
BssT1I	CCWWGG	2 cut(s)	216, 363
Bst2BI	CACGAG	1 cut(s)	287
Bst2UI	CCWGG	1 cut(s)	351
Bst4CI	ACNGT	1 cut(s)	16
BstEII	GGTNACC	1 cut(s)	323
BstFNI	CGCG	1 cut(s)	49
BstHHI	GCGC	1 cut(s)	49
BstKTI	GATC	3 cut(s)	93, 111, 235
BstMAI	GTCTC	1 cut(s)	95
BstMBI	GATC	3 cut(s)	90, 108, 232
BstMWI	GCNNNNNNNGC	1 cut(s)	196
BstNI	CCWGG	1 cut(s)	351
BstNSI	RCATGY	2 cut(s)	8, 129
BstPI	GGTNACC	1 cut(s)	323
BstSCI	CCNGG	1 cut(s)	349
BstUI	CGCG	1 cut(s)	49
BsuRI	GGCC	1 cut(s)	83
BtsIMutI	CAGTG	1 cut(s)	21
CfoI	GCGC	1 cut(s)	49
Csp6I	GTAC	1 cut(s)	273
CspCI	CAANNNNNGTGG	2 cut(s)	60, 95
CviAII	CATG	4 cut(s)	5, 126, 162, 281
CviJI	RGCY	6 cut(s)	83, 133, 148, 166, 221, 257
CviKI_1	RGCY	6 cut(s)	83, 133, 148, 166, 221, 257
CviQI	GTAC	1 cut(s)	273
DpnI	GATC	3 cut(s)	92, 110, 234
DpnII	GATC	3 cut(s)	90, 108, 232
EaeI	YGGCCR	1 cut(s)	81
Eco130I	CCWWGG	2 cut(s)	216, 363
Eco57I	CTGAAG	1 cut(s)	152
Eco91I	GGTNACC	1 cut(s)	323
EcoO65I	GGTNACC	1 cut(s)	323
EcoRII	CCWGG	1 cut(s)	349
EcoT14I	CCWWGG	2 cut(s)	216, 363
EcoT22I	ATGCAT	1 cut(s)	6
ErhI	CCWWGG	2 cut(s)	216, 363
FaeI	CATG	4 cut(s)	8, 129, 165, 284
FaiI	YATR	7 cut(s)	6, 65, 127, 140, 163, 282, 370
FatI	CATG	4 cut(s)	4, 125, 161, 280
FauI	CCCGC	1 cut(s)	42
FbaI	TGATCA	1 cut(s)	90
FspBI	CTAG	2 cut(s)	21, 320
GlaI	GCGC	1 cut(s)	48
HaeIII	GGCC	1 cut(s)	83
HhaI	GCGC	1 cut(s)	49
Hin1II	CATG	4 cut(s)	8, 129, 165, 284
Hin6I	GCGC	1 cut(s)	47
HinP1I	GCGC	1 cut(s)	47
HinfI	GANTC	2 cut(s)	103, 316
HphI	GGTGA	2 cut(s)	64, 335
Hpy188I	TCNGA	2 cut(s)	100, 108
Hpy188III	TCNNGA	1 cut(s)	118
HpyAV	CCTTC	3 cut(s)	164, 339, 369
HpyCH4III	ACNGT	1 cut(s)	16
HpyCH4V	TGCA	2 cut(s)	4, 199
HpyF10VI	GCNNNNNNNGC	1 cut(s)	196
Hsp92II	CATG	4 cut(s)	8, 129, 165, 284
HspAI	GCGC	1 cut(s)	47
Ksp22I	TGATCA	1 cut(s)	90
Kzo9I	GATC	3 cut(s)	90, 108, 232
LmnI	GCTCC	3 cut(s)	145, 262, 352
LpnPI	CCDG	3 cut(s)	155, 336, 363
MaeI	CTAG	2 cut(s)	21, 320
MaeIII	GTNAC	2 cut(s)	206, 323
MalI	GATC	3 cut(s)	92, 110, 234
MbiI	CCGCTC	1 cut(s)	347
MboI	GATC	3 cut(s)	90, 108, 232
MboII	GAAGA	1 cut(s)	233
MlsI	TGGCCA	1 cut(s)	83
MluCI	AATT	1 cut(s)	247
MluNI	TGGCCA	1 cut(s)	83
MlyI	GAGTC	1 cut(s)	97
MnlI	CCTC	5 cut(s)	51, 180, 283, 301, 352
Mox20I	TGGCCA	1 cut(s)	83
Mph1103I	ATGCAT	1 cut(s)	6
MscI	TGGCCA	1 cut(s)	83
Msp20I	TGGCCA	1 cut(s)	83
MspR9I	CCNGG	1 cut(s)	351
MvaI	CCWGG	1 cut(s)	351
MvnI	CGCG	1 cut(s)	49
MwoI	GCNNNNNNNGC	1 cut(s)	196
NdeII	GATC	3 cut(s)	90, 108, 232
NlaIII	CATG	4 cut(s)	8, 129, 165, 284
NlaIV	GGNNCC	1 cut(s)	258
NmuCI	GTSAC	2 cut(s)	206, 323
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	2 cut(s)	8, 129
PfeI	GAWTC	1 cut(s)	316
PleI	GAGTC	1 cut(s)	97
PpsI	GAGTC	1 cut(s)	97
Psp6I	CCWGG	1 cut(s)	349
PspEI	GGTNACC	1 cut(s)	323
PspGI	CCWGG	1 cut(s)	349
PspN4I	GGNNCC	1 cut(s)	258
RsaI	GTAC	1 cut(s)	274
RsaNI	GTAC	1 cut(s)	273
Sau3AI	GATC	3 cut(s)	90, 108, 232
SchI	GAGTC	1 cut(s)	97
ScrFI	CCNGG	1 cut(s)	351
SetI	ASST	6 cut(s)	43, 135, 150, 312, 325, 369
Sse9I	AATT	1 cut(s)	247
SsiI	CCGC	2 cut(s)	49, 345
SspMI	CTAG	2 cut(s)	21, 320
StyD4I	CCNGG	1 cut(s)	349
StyI	CCWWGG	2 cut(s)	216, 363
TaaI	ACNGT	1 cut(s)	16
TaqI	TCGA	1 cut(s)	119
TasI	AATT	1 cut(s)	247
TatI	WGTACW	1 cut(s)	272
TfiI	GAWTC	1 cut(s)	316
TscAI	CASTG	1 cut(s)	21
TseFI	GTSAC	2 cut(s)	206, 323
Tsp45I	GTSAC	2 cut(s)	206, 323
TspDTI	ATGAA	3 cut(s)	80, 127, 321
TspRI	CASTG	1 cut(s)	21
XceI	RCATGY	2 cut(s)	8, 129
XspI	CTAG	2 cut(s)	21, 320
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.