Histone-like transcription factor (CBF/NF-Y) and archaeal histone
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_4g11310 |
| malus_domestica | MD17G1250700.v1.1 |
| prunus_persica | Prupe.3G149300_v2.0.a1 |
| pyrus_communis | pycom09g17270 pycom14g13000 pycom17g25460 |
| rosa_chinensis | RchiOBHm_Chr4g0407551 |
| rosa_laevigata | RLG00000008711 |
| rosa_roxburghii | Rroxscaffold_5G00352170 |
| rosa_rugosa | Rorug04G0080300 |
| rosa_samantha | Rh4AG145000 Rh4BG142900 Rh4CG151700 Rh4DG138900 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 293 |
| AciI | CCGC | 1 cut(s) | 291 |
| AcuI | CTGAAG | 2 cut(s) | 77, 146 |
| AfaI | GTAC | 1 cut(s) | 199 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 315 |
| AjnI | CCWGG | 1 cut(s) | 295 |
| AluBI | AGCT | 3 cut(s) | 58, 73, 330 |
| AluI | AGCT | 3 cut(s) | 58, 73, 330 |
| Alw26I | GTCTC | 1 cut(s) | 20 |
| AspS9I | GGNCC | 1 cut(s) | 211 |
| AsuHPI | GGTGA | 1 cut(s) | 281 |
| AvaII | GGWCC | 1 cut(s) | 211 |
| BauI | CACGAG | 1 cut(s) | 221 |
| BciT130I | CCWGG | 1 cut(s) | 297 |
| BclI | TGATCA | 1 cut(s) | 15 |
| BcoDI | GTCTC | 1 cut(s) | 20 |
| Bme1390I | CCNGG | 1 cut(s) | 297 |
| Bme18I | GGWCC | 1 cut(s) | 211 |
| BmgT120I | GGNCC | 1 cut(s) | 211 |
| BmiI | GGNNCC | 1 cut(s) | 183 |
| BmrFI | CCNGG | 1 cut(s) | 297 |
| BsaJI | CCNNGG | 2 cut(s) | 141, 309 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 315 |
| Bse3DI | GCAATG | 2 cut(s) | 119, 135 |
| BseBI | CCWGG | 1 cut(s) | 297 |
| BseDI | CCNNGG | 2 cut(s) | 141, 309 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 315 |
| BseMI | GCAATG | 2 cut(s) | 119, 135 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 315 |
| BsmAI | GTCTC | 1 cut(s) | 20 |
| Bsp143I | GATC | 3 cut(s) | 15, 33, 157 |
| BspACI | CCGC | 1 cut(s) | 291 |
| BspLI | GGNNCC | 1 cut(s) | 183 |
| BsrBI | CCGCTC | 1 cut(s) | 293 |
| BsrDI | GCAATG | 2 cut(s) | 119, 135 |
| BssECI | CCNNGG | 2 cut(s) | 141, 309 |
| BssMI | GATC | 3 cut(s) | 15, 33, 157 |
| BssSI | CACGAG | 1 cut(s) | 221 |
| BssT1I | CCWWGG | 2 cut(s) | 141, 309 |
| Bst2BI | CACGAG | 1 cut(s) | 221 |
| Bst2UI | CCWGG | 1 cut(s) | 297 |
| BstC8I | GCNNGC | 2 cut(s) | 106, 332 |
| BstEII | GGTNACC | 1 cut(s) | 269 |
| BstKTI | GATC | 3 cut(s) | 18, 36, 160 |
| BstMAI | GTCTC | 1 cut(s) | 20 |
| BstMBI | GATC | 3 cut(s) | 15, 33, 157 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 121, 340 |
| BstNI | CCWGG | 1 cut(s) | 297 |
| BstNSI | RCATGY | 1 cut(s) | 54 |
| BstPI | GGTNACC | 1 cut(s) | 269 |
| BstSCI | CCNGG | 1 cut(s) | 295 |
| Cac8I | GCNNGC | 2 cut(s) | 106, 332 |
| Cfr13I | GGNCC | 1 cut(s) | 211 |
| Csp6I | GTAC | 1 cut(s) | 198 |
| CviAII | CATG | 4 cut(s) | 51, 87, 206, 215 |
| CviJI | RGCY | 7 cut(s) | 58, 73, 91, 146, 182, 330, 343 |
| CviKI_1 | RGCY | 7 cut(s) | 58, 73, 91, 146, 182, 330, 343 |
| CviQI | GTAC | 1 cut(s) | 198 |
| DpnI | GATC | 3 cut(s) | 17, 35, 159 |
| DpnII | GATC | 3 cut(s) | 15, 33, 157 |
| Eco130I | CCWWGG | 2 cut(s) | 141, 309 |
| Eco47I | GGWCC | 1 cut(s) | 211 |
| Eco57I | CTGAAG | 2 cut(s) | 77, 146 |
| Eco91I | GGTNACC | 1 cut(s) | 269 |
| EcoO65I | GGTNACC | 1 cut(s) | 269 |
| EcoRII | CCWGG | 1 cut(s) | 295 |
| EcoT14I | CCWWGG | 2 cut(s) | 141, 309 |
| ErhI | CCWWGG | 2 cut(s) | 141, 309 |
| FaeI | CATG | 4 cut(s) | 54, 90, 209, 218 |
| FaiI | YATR | 6 cut(s) | 52, 65, 88, 207, 216, 346 |
| FatI | CATG | 4 cut(s) | 50, 86, 205, 214 |
| FbaI | TGATCA | 1 cut(s) | 15 |
| Hin1II | CATG | 4 cut(s) | 54, 90, 209, 218 |
| HinfI | GANTC | 2 cut(s) | 28, 262 |
| HphI | GGTGA | 1 cut(s) | 281 |
| Hpy188I | TCNGA | 3 cut(s) | 25, 33, 96 |
| Hpy188III | TCNNGA | 1 cut(s) | 43 |
| HpyAV | CCTTC | 2 cut(s) | 285, 315 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 121, 340 |
| Hsp92II | CATG | 4 cut(s) | 54, 90, 209, 218 |
| Ksp22I | TGATCA | 1 cut(s) | 15 |
| Kzo9I | GATC | 3 cut(s) | 15, 33, 157 |
| LmnI | GCTCC | 3 cut(s) | 70, 187, 298 |
| LpnPI | CCDG | 3 cut(s) | 251, 282, 309 |
| MaeIII | GTNAC | 2 cut(s) | 131, 269 |
| MalI | GATC | 3 cut(s) | 17, 35, 159 |
| MbiI | CCGCTC | 1 cut(s) | 293 |
| MboI | GATC | 3 cut(s) | 15, 33, 157 |
| MboII | GAAGA | 1 cut(s) | 158 |
| MluCI | AATT | 1 cut(s) | 172 |
| MlyI | GAGTC | 1 cut(s) | 22 |
| MnlI | CCTC | 5 cut(s) | 105, 202, 217, 247, 298 |
| MspR9I | CCNGG | 1 cut(s) | 297 |
| MvaI | CCWGG | 1 cut(s) | 297 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 121, 340 |
| NdeII | GATC | 3 cut(s) | 15, 33, 157 |
| NlaIII | CATG | 4 cut(s) | 54, 90, 209, 218 |
| NlaIV | GGNNCC | 1 cut(s) | 183 |
| NmuCI | GTSAC | 2 cut(s) | 131, 269 |
| NspI | RCATGY | 1 cut(s) | 54 |
| PfeI | GAWTC | 1 cut(s) | 262 |
| PleI | GAGTC | 1 cut(s) | 22 |
| PpsI | GAGTC | 1 cut(s) | 22 |
| Psp6I | CCWGG | 1 cut(s) | 295 |
| PspEI | GGTNACC | 1 cut(s) | 269 |
| PspGI | CCWGG | 1 cut(s) | 295 |
| PspN4I | GGNNCC | 1 cut(s) | 183 |
| PspPI | GGNCC | 1 cut(s) | 211 |
| RsaI | GTAC | 1 cut(s) | 199 |
| RsaNI | GTAC | 1 cut(s) | 198 |
| Sau3AI | GATC | 3 cut(s) | 15, 33, 157 |
| Sau96I | GGNCC | 1 cut(s) | 211 |
| SchI | GAGTC | 1 cut(s) | 22 |
| ScrFI | CCNGG | 1 cut(s) | 297 |
| SetI | ASST | 4 cut(s) | 60, 75, 258, 332 |
| SinI | GGWCC | 1 cut(s) | 211 |
| Sse9I | AATT | 1 cut(s) | 172 |
| SsiI | CCGC | 1 cut(s) | 291 |
| StyD4I | CCNGG | 1 cut(s) | 295 |
| StyI | CCWWGG | 2 cut(s) | 141, 309 |
| TaqI | TCGA | 1 cut(s) | 44 |
| TasI | AATT | 1 cut(s) | 172 |
| TatI | WGTACW | 1 cut(s) | 197 |
| TfiI | GAWTC | 1 cut(s) | 262 |
| TseFI | GTSAC | 2 cut(s) | 131, 269 |
| Tsp45I | GTSAC | 2 cut(s) | 131, 269 |
| TspDTI | ATGAA | 2 cut(s) | 52, 267 |
| VpaK11BI | GGWCC | 1 cut(s) | 211 |
| XceI | RCATGY | 1 cut(s) | 54 |