Histone-like transcription factor (CBF/NF-Y) and archaeal histone
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_4g11310 |
| malus_domestica | MD17G1250700.v1.1 |
| prunus_persica | Prupe.3G149300_v2.0.a1 |
| pyrus_communis | pycom09g17270 pycom14g13000 pycom17g25460 |
| rosa_chinensis | RchiOBHm_Chr4g0407551 |
| rosa_laevigata | RLG00000008711 |
| rosa_roxburghii | Rroxscaffold_5G00352170 |
| rosa_rugosa | Rorug04G0080300 |
| rosa_samantha | Rh4AG145000 Rh4BG142900 Rh4CG151700 Rh4DG138900 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 509 |
| AccII | CGCG | 1 cut(s) | 211 |
| AciI | CCGC | 3 cut(s) | 89, 211, 507 |
| AcuI | CTGAAG | 3 cut(s) | 105, 159, 314 |
| AfaI | GTAC | 1 cut(s) | 436 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 79 |
| AgsI | TTSAA | 1 cut(s) | 55 |
| AjnI | CCWGG | 1 cut(s) | 511 |
| AluBI | AGCT | 3 cut(s) | 136, 295, 310 |
| AluI | AGCT | 3 cut(s) | 136, 295, 310 |
| Alw26I | GTCTC | 2 cut(s) | 88, 257 |
| Ama87I | CYCGRG | 1 cut(s) | 158 |
| ApeKI | GCWGC | 1 cut(s) | 133 |
| AspLEI | GCGC | 1 cut(s) | 211 |
| AsuHPI | GGTGA | 2 cut(s) | 226, 497 |
| AvaI | CYCGRG | 1 cut(s) | 158 |
| BauI | CACGAG | 2 cut(s) | 36, 449 |
| BbvI | GCAGC | 1 cut(s) | 145 |
| BccI | CCATC | 1 cut(s) | 201 |
| BciT130I | CCWGG | 1 cut(s) | 513 |
| BclI | TGATCA | 1 cut(s) | 252 |
| BcoDI | GTCTC | 2 cut(s) | 88, 257 |
| BfaI | CTAG | 1 cut(s) | 482 |
| BfmI | CTRYAG | 1 cut(s) | 116 |
| BisI | GCNGC | 2 cut(s) | 90, 134 |
| BlsI | GCNGC | 2 cut(s) | 91, 135 |
| Bme1390I | CCNGG | 1 cut(s) | 513 |
| BmeT110I | CYCGRG | 1 cut(s) | 158 |
| BmiI | GGNNCC | 1 cut(s) | 420 |
| BmrFI | CCNGG | 1 cut(s) | 513 |
| BsaJI | CCNNGG | 2 cut(s) | 378, 525 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 79 |
| Bse3DI | GCAATG | 2 cut(s) | 356, 372 |
| BseBI | CCWGG | 1 cut(s) | 513 |
| BseDI | CCNNGG | 2 cut(s) | 378, 525 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 79 |
| BseMI | GCAATG | 2 cut(s) | 356, 372 |
| BseRI | GAGGAG | 1 cut(s) | 92 |
| BseXI | GCAGC | 1 cut(s) | 145 |
| BsgI | GTGCAG | 1 cut(s) | 152 |
| Bsh1236I | CGCG | 1 cut(s) | 211 |
| BsiHKCI | CYCGRG | 1 cut(s) | 158 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 79 |
| BsmAI | GTCTC | 2 cut(s) | 88, 257 |
| BsmBI | CGTCTC | 1 cut(s) | 88 |
| BsoBI | CYCGRG | 1 cut(s) | 158 |
| Bsp143I | GATC | 3 cut(s) | 252, 270, 394 |
| BspACI | CCGC | 3 cut(s) | 89, 211, 507 |
| BspFNI | CGCG | 1 cut(s) | 211 |
| BspLI | GGNNCC | 1 cut(s) | 420 |
| BspMAI | CTGCAG | 1 cut(s) | 120 |
| BsrBI | CCGCTC | 1 cut(s) | 509 |
| BsrDI | GCAATG | 2 cut(s) | 356, 372 |
| BssECI | CCNNGG | 2 cut(s) | 378, 525 |
| BssMI | GATC | 3 cut(s) | 252, 270, 394 |
| BssSI | CACGAG | 2 cut(s) | 36, 449 |
| BssT1I | CCWWGG | 2 cut(s) | 378, 525 |
| Bst2BI | CACGAG | 2 cut(s) | 36, 449 |
| Bst2UI | CCWGG | 1 cut(s) | 513 |
| BstEII | GGTNACC | 1 cut(s) | 485 |
| BstFNI | CGCG | 1 cut(s) | 211 |
| BstHHI | GCGC | 1 cut(s) | 211 |
| BstKTI | GATC | 3 cut(s) | 255, 273, 397 |
| BstMAI | GTCTC | 2 cut(s) | 88, 257 |
| BstMBI | GATC | 3 cut(s) | 252, 270, 394 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 89, 358 |
| BstNI | CCWGG | 1 cut(s) | 513 |
| BstNSI | RCATGY | 1 cut(s) | 291 |
| BstPI | GGTNACC | 1 cut(s) | 485 |
| BstSCI | CCNGG | 1 cut(s) | 511 |
| BstSFI | CTRYAG | 1 cut(s) | 116 |
| BstUI | CGCG | 1 cut(s) | 211 |
| BstV1I | GCAGC | 1 cut(s) | 145 |
| BtsIMutI | CAGTG | 1 cut(s) | 183 |
| CfoI | GCGC | 1 cut(s) | 211 |
| Csp6I | GTAC | 1 cut(s) | 435 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 24, 59, 222, 257 |
| CviAII | CATG | 3 cut(s) | 288, 324, 443 |
| CviJI | RGCY | 8 cut(s) | 58, 83, 136, 295, 310, 328, 383, 419 |
| CviKI_1 | RGCY | 8 cut(s) | 58, 83, 136, 295, 310, 328, 383, 419 |
| CviQI | GTAC | 1 cut(s) | 435 |
| DpnI | GATC | 3 cut(s) | 254, 272, 396 |
| DpnII | GATC | 3 cut(s) | 252, 270, 394 |
| Eco130I | CCWWGG | 2 cut(s) | 378, 525 |
| Eco57I | CTGAAG | 3 cut(s) | 105, 159, 314 |
| Eco88I | CYCGRG | 1 cut(s) | 158 |
| Eco91I | GGTNACC | 1 cut(s) | 485 |
| EcoO65I | GGTNACC | 1 cut(s) | 485 |
| EcoRII | CCWGG | 1 cut(s) | 511 |
| EcoT14I | CCWWGG | 2 cut(s) | 378, 525 |
| ErhI | CCWWGG | 2 cut(s) | 378, 525 |
| Esp3I | CGTCTC | 1 cut(s) | 88 |
| FaeI | CATG | 3 cut(s) | 291, 327, 446 |
| FaiI | YATR | 7 cut(s) | 62, 227, 289, 302, 325, 444, 532 |
| FatI | CATG | 3 cut(s) | 287, 323, 442 |
| FauI | CCCGC | 1 cut(s) | 204 |
| FbaI | TGATCA | 1 cut(s) | 252 |
| Fnu4HI | GCNGC | 2 cut(s) | 90, 134 |
| Fsp4HI | GCNGC | 2 cut(s) | 90, 134 |
| FspBI | CTAG | 1 cut(s) | 482 |
| GlaI | GCGC | 1 cut(s) | 210 |
| GluI | GCNGC | 2 cut(s) | 90, 134 |
| HhaI | GCGC | 1 cut(s) | 211 |
| Hin1II | CATG | 3 cut(s) | 291, 327, 446 |
| Hin6I | GCGC | 1 cut(s) | 209 |
| HinP1I | GCGC | 1 cut(s) | 209 |
| HinfI | GANTC | 4 cut(s) | 4, 163, 265, 478 |
| HphI | GGTGA | 2 cut(s) | 226, 497 |
| Hpy188I | TCNGA | 2 cut(s) | 262, 270 |
| Hpy188III | TCNNGA | 3 cut(s) | 160, 247, 280 |
| HpyAV | CCTTC | 3 cut(s) | 75, 501, 531 |
| HpyCH4V | TGCA | 4 cut(s) | 46, 118, 133, 361 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 89, 358 |
| Hsp92II | CATG | 3 cut(s) | 291, 327, 446 |
| HspAI | GCGC | 1 cut(s) | 209 |
| Ksp22I | TGATCA | 1 cut(s) | 252 |
| Kzo9I | GATC | 3 cut(s) | 252, 270, 394 |
| LmnI | GCTCC | 3 cut(s) | 307, 424, 514 |
| LpnPI | CCDG | 3 cut(s) | 317, 498, 525 |
| Lsp1109I | GCAGC | 1 cut(s) | 145 |
| MaeI | CTAG | 1 cut(s) | 482 |
| MaeIII | GTNAC | 2 cut(s) | 368, 485 |
| MalI | GATC | 3 cut(s) | 254, 272, 396 |
| MbiI | CCGCTC | 1 cut(s) | 509 |
| MboI | GATC | 3 cut(s) | 252, 270, 394 |
| MboII | GAAGA | 1 cut(s) | 395 |
| MfeI | CAATTG | 1 cut(s) | 152 |
| MluCI | AATT | 4 cut(s) | 16, 103, 152, 409 |
| MlyI | GAGTC | 1 cut(s) | 259 |
| MmeI | TCCRAC | 1 cut(s) | 136 |
| MnlI | CCTC | 8 cut(s) | 70, 73, 79, 213, 342, 445, 463, 514 |
| MspA1I | CMGCKG | 1 cut(s) | 136 |
| MspR9I | CCNGG | 1 cut(s) | 513 |
| MunI | CAATTG | 1 cut(s) | 152 |
| MvaI | CCWGG | 1 cut(s) | 513 |
| MvnI | CGCG | 1 cut(s) | 211 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 89, 358 |
| NdeII | GATC | 3 cut(s) | 252, 270, 394 |
| NlaIII | CATG | 3 cut(s) | 291, 327, 446 |
| NlaIV | GGNNCC | 1 cut(s) | 420 |
| NmuCI | GTSAC | 2 cut(s) | 368, 485 |
| NspI | RCATGY | 1 cut(s) | 291 |
| PaeR7I | CTCGAG | 1 cut(s) | 158 |
| PfeI | GAWTC | 3 cut(s) | 4, 163, 478 |
| PkrI | GCNGC | 2 cut(s) | 91, 135 |
| PleI | GAGTC | 1 cut(s) | 259 |
| PpsI | GAGTC | 1 cut(s) | 259 |
| Psp6I | CCWGG | 1 cut(s) | 511 |
| PspEI | GGTNACC | 1 cut(s) | 485 |
| PspGI | CCWGG | 1 cut(s) | 511 |
| PspN4I | GGNNCC | 1 cut(s) | 420 |
| PstI | CTGCAG | 1 cut(s) | 120 |
| PvuII | CAGCTG | 1 cut(s) | 136 |
| RsaI | GTAC | 1 cut(s) | 436 |
| RsaNI | GTAC | 1 cut(s) | 435 |
| SatI | GCNGC | 2 cut(s) | 90, 134 |
| Sau3AI | GATC | 3 cut(s) | 252, 270, 394 |
| SchI | GAGTC | 1 cut(s) | 259 |
| ScrFI | CCNGG | 1 cut(s) | 513 |
| SetI | ASST | 8 cut(s) | 31, 138, 205, 297, 312, 474, 487, 531 |
| SfcI | CTRYAG | 1 cut(s) | 116 |
| Sfr274I | CTCGAG | 1 cut(s) | 158 |
| SlaI | CTCGAG | 1 cut(s) | 158 |
| SmlI | CTYRAG | 1 cut(s) | 158 |
| SmoI | CTYRAG | 1 cut(s) | 158 |
| Sse9I | AATT | 4 cut(s) | 16, 103, 152, 409 |
| SsiI | CCGC | 3 cut(s) | 89, 211, 507 |
| SspMI | CTAG | 1 cut(s) | 482 |
| StyD4I | CCNGG | 1 cut(s) | 511 |
| StyI | CCWWGG | 2 cut(s) | 378, 525 |
| TaqI | TCGA | 2 cut(s) | 159, 281 |
| TasI | AATT | 4 cut(s) | 16, 103, 152, 409 |
| TatI | WGTACW | 1 cut(s) | 434 |
| TauI | GCSGC | 1 cut(s) | 92 |
| TfiI | GAWTC | 3 cut(s) | 4, 163, 478 |
| TscAI | CASTG | 1 cut(s) | 183 |
| TseFI | GTSAC | 2 cut(s) | 368, 485 |
| TseI | GCWGC | 1 cut(s) | 133 |
| Tsp45I | GTSAC | 2 cut(s) | 368, 485 |
| TspDTI | ATGAA | 5 cut(s) | 17, 137, 242, 289, 483 |
| TspRI | CASTG | 1 cut(s) | 183 |
| XceI | RCATGY | 1 cut(s) | 291 |
| XhoI | CTCGAG | 1 cut(s) | 158 |
| XspI | CTAG | 1 cut(s) | 482 |