Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0016821

Physical Location & Seq

Genomic Coordinates Forward (+)

16308590 .. 16312026

Gene Structure 3437 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G149300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGGACATACCGATGGGGAATCTCACTTCACATGAAAATCAGGTGACAGAACTAGAAACATTTGAAGCCTTTGAAACCAGAAACGAGCTAGCTAGACAATTCAGGCCAGTGCTTATGGATGTGAACCATTCTATCAATATCACACCCTCTTCAAACACTTCTCCAGAAATGCACGGTTTCATGTCGACGGGCTCTTTCGAGCTACGCAATTACTACTCTCATCCGTCTAGCAGAGAGGAGGCTGATCAGGAGGCTAAGCAATCCAGTTTTACGGAACTTCAGAAGGAAGAGATAGAGATATTCTGGAATCAGCAACTGTTTGAAATTCAAAACACAACAGTGGCAAAAGCACATCACGAACTCCCTCTTGCCAGGGTCAAAAGAGTCATGAAATCTGATGGACAAGTCAAGAAGGTGAGCTCGGAGACTCCGGTTTTGTTTTCGAAAGCATGTGAGCTTTTCATTATGGAGCTCACACTTCGTTCATGGCTGCACACTGAAAGAAGCAAGAGGCGTACGTTGCAGCATTGTGACACTGCCAGGGCAATTATGCAGGATGAGCTTCTTCACTTTTTAGTTCACGCCGTTCCTCCGCTGAACTCCATCGCACGTGACTATTTTGAAGATGATGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0005737 GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016602 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044798 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0090575 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04612 ko05152 map04612 map05152

Pfam Domains

Protein Families

CBFD_NFYB_HMF

Protein Analysis

212

Amino Acids

24.53

Weight (kDa)

5.39

Isoelectric Point (pI)

64.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016821)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g11310
malus_domestica	MD17G1250700.v1.1
prunus_persica	Prupe.3G149300_v2.0.a1
pyrus_communis	pycom09g17270 pycom14g13000 pycom17g25460
rosa_chinensis	RchiOBHm_Chr4g0407551
rosa_laevigata	RLG00000008711
rosa_roxburghii	Rroxscaffold_5G00352170
rosa_rugosa	Rorug04G0080300
rosa_samantha	Rh4AG145000 Rh4BG142900 Rh4CG151700 Rh4DG138900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	185
AciI	CCGC	1 cut(s)	593
AcsI	RAATTY	1 cut(s)	324
AcuI	CTGAAG	1 cut(s)	263
AcvI	CACGTG	1 cut(s)	611
AfaI	GTAC	1 cut(s)	517
AgsI	TTSAA	6 cut(s)	65, 74, 153, 323, 329, 623
AjnI	CCWGG	2 cut(s)	371, 539
AleI	CACNNNNGTG	1 cut(s)	338
AluBI	AGCT	7 cut(s)	88, 92, 202, 420, 457, 472, 562
AluI	AGCT	7 cut(s)	88, 92, 202, 420, 457, 472, 562
Alw21I	GWGCWC	2 cut(s)	422, 474
Alw26I	GTCTC	1 cut(s)	419
AlwNI	CAGNNNCTG	1 cut(s)	316
AoxI	GGCC	1 cut(s)	104
ApeKI	GCWGC	2 cut(s)	490, 523
ApoI	RAATTY	1 cut(s)	324
ArsI	GACNNNNNNTTYG	2 cut(s)	418, 450
AsuHPI	GGTGA	2 cut(s)	55, 427
AsuII	TTCGAA	1 cut(s)	443
AsuNHI	GCTAGC	1 cut(s)	88
BanII	GRGCYC	3 cut(s)	194, 422, 474
BbrPI	CACGTG	1 cut(s)	611
Bbv12I	GWGCWC	2 cut(s)	422, 474
BbvI	GCAGC	2 cut(s)	477, 535
BccI	CCATC	3 cut(s)	7, 392, 611
BceAI	ACGGC	1 cut(s)	569
BciT130I	CCWGG	2 cut(s)	373, 541
BclI	TGATCA	1 cut(s)	244
BcoDI	GTCTC	1 cut(s)	419
BfaI	CTAG	4 cut(s)	53, 89, 93, 228
BisI	GCNGC	2 cut(s)	491, 524
BlpI	GCTNAGC	1 cut(s)	255
BlsI	GCNGC	2 cut(s)	492, 525
Bme1390I	CCNGG	2 cut(s)	373, 541
BmrFI	CCNGG	2 cut(s)	373, 541
BmtI	GCTAGC	1 cut(s)	92
BpmI	CTGGAG	1 cut(s)	147
Bpu1102I	GCTNAGC	1 cut(s)	255
Bpu14I	TTCGAA	1 cut(s)	443
BsaAI	YACGTR	1 cut(s)	611
BsaJI	CCNNGG	2 cut(s)	372, 540
BsaWI	WCCGGW	1 cut(s)	430
Bse1I	ACTGG	2 cut(s)	107, 264
BseBI	CCWGG	2 cut(s)	373, 541
BseDI	CCNNGG	2 cut(s)	372, 540
BseGI	GGATG	3 cut(s)	124, 220, 562
BseNI	ACTGG	2 cut(s)	107, 264
BseRI	GAGGAG	1 cut(s)	251
BseXI	GCAGC	2 cut(s)	477, 535
BsgI	GTGCAG	1 cut(s)	476
BshFI	GGCC	1 cut(s)	106
BsiHKAI	GWGCWC	2 cut(s)	422, 474
BsiSI	CCGG	1 cut(s)	431
BsiWI	CGTACG	1 cut(s)	515
BsmAI	GTCTC	1 cut(s)	419
BsnI	GGCC	1 cut(s)	106
Bsp119I	TTCGAA	1 cut(s)	443
Bsp1286I	GDGCHC	3 cut(s)	194, 422, 474
Bsp143I	GATC	1 cut(s)	244
Bsp1720I	GCTNAGC	1 cut(s)	255
BspACI	CCGC	1 cut(s)	593
BspANI	GGCC	1 cut(s)	106
BspHI	TCATGA	1 cut(s)	387
BspOI	GCTAGC	1 cut(s)	92
BspT104I	TTCGAA	1 cut(s)	443
BsrI	ACTGG	2 cut(s)	107, 264
BssECI	CCNNGG	2 cut(s)	372, 540
BssMI	GATC	1 cut(s)	244
Bst2UI	CCWGG	2 cut(s)	373, 541
Bst4CI	ACNGT	3 cut(s)	176, 318, 340
Bst6I	CTCTTC	2 cut(s)	154, 282
BstBAI	YACGTR	1 cut(s)	611
BstBI	TTCGAA	1 cut(s)	443
BstC8I	GCNNGC	1 cut(s)	90
BstDEI	CTNAG	1 cut(s)	255
BstF5I	GGATG	3 cut(s)	124, 220, 562
BstKTI	GATC	1 cut(s)	247
BstMAI	GTCTC	1 cut(s)	419
BstMBI	GATC	1 cut(s)	244
BstMWI	GCNNNNNNNGC	2 cut(s)	520, 559
BstNI	CCWGG	2 cut(s)	373, 541
BstNSI	RCATGY	1 cut(s)	453
BstSCI	CCNGG	2 cut(s)	371, 539
BstV1I	GCAGC	2 cut(s)	477, 535
BsuRI	GGCC	1 cut(s)	106
BtgZI	GCGATG	1 cut(s)	589
BtsCI	GGATG	3 cut(s)	124, 220, 562
BtsI	GCAGTG	1 cut(s)	534
BtsIMutI	CAGTG	4 cut(s)	114, 345, 495, 534
Cac8I	GCNNGC	1 cut(s)	90
CaiI	CAGNNNCTG	1 cut(s)	316
CciI	TCATGA	1 cut(s)	387
Csp6I	GTAC	1 cut(s)	516
CviAII	CATG	5 cut(s)	32, 181, 388, 450, 486
CviQI	GTAC	1 cut(s)	516
DdeI	CTNAG	1 cut(s)	255
DpnI	GATC	1 cut(s)	246
DpnII	GATC	1 cut(s)	244
Eam1104I	CTCTTC	2 cut(s)	154, 282
EarI	CTCTTC	2 cut(s)	154, 282
Ecl136II	GAGCTC	2 cut(s)	420, 472
Eco24I	GRGCYC	3 cut(s)	194, 422, 474
Eco53kI	GAGCTC	2 cut(s)	420, 472
Eco57I	CTGAAG	1 cut(s)	263
Eco72I	CACGTG	1 cut(s)	611
EcoICRI	GAGCTC	2 cut(s)	420, 472
EcoRII	CCWGG	2 cut(s)	371, 539
EcoT38I	GRGCYC	3 cut(s)	194, 422, 474
FaeI	CATG	5 cut(s)	35, 184, 391, 453, 489
FaiI	YATR	9 cut(s)	8, 33, 116, 182, 389, 451, 467, 487, 551
FatI	CATG	5 cut(s)	31, 180, 387, 449, 485
FbaI	TGATCA	1 cut(s)	244
FblI	GTMKAC	1 cut(s)	185
Fnu4HI	GCNGC	2 cut(s)	491, 524
FokI	GGATG	3 cut(s)	131, 207, 569
FriOI	GRGCYC	3 cut(s)	194, 422, 474
Fsp4HI	GCNGC	2 cut(s)	491, 524
FspBI	CTAG	4 cut(s)	53, 89, 93, 228
GluI	GCNGC	2 cut(s)	491, 524
GsuI	CTGGAG	1 cut(s)	147
HaeIII	GGCC	1 cut(s)	106
HapII	CCGG	1 cut(s)	431
Hin1II	CATG	5 cut(s)	35, 184, 391, 453, 489
HincII	GTYRAC	1 cut(s)	186
HindII	GTYRAC	1 cut(s)	186
HinfI	GANTC	4 cut(s)	19, 307, 384, 427
HpaII	CCGG	1 cut(s)	431
HphI	GGTGA	2 cut(s)	55, 427
Hpy166II	GTNNAC	3 cut(s)	124, 186, 580
Hpy188I	TCNGA	3 cut(s)	282, 397, 424
Hpy188III	TCNNGA	6 cut(s)	164, 248, 304, 356, 388, 409
Hpy8I	GTNNAC	3 cut(s)	124, 186, 580
Hpy99I	CGWCG	1 cut(s)	190
HpyAV	CCTTC	2 cut(s)	277, 406
HpyCH4III	ACNGT	3 cut(s)	176, 318, 340
HpyCH4IV	ACGT	2 cut(s)	518, 610
HpyCH4V	TGCA	4 cut(s)	172, 493, 523, 553
HpyF10VI	GCNNNNNNNGC	2 cut(s)	520, 559
HpyF3I	CTNAG	1 cut(s)	255
HpySE526I	ACGT	2 cut(s)	518, 610
Hsp92II	CATG	5 cut(s)	35, 184, 391, 453, 489
Ksp22I	TGATCA	1 cut(s)	244
Kzo9I	GATC	1 cut(s)	244
LmnI	GCTCC	1 cut(s)	469
Lsp1109I	GCAGC	2 cut(s)	477, 535
MaeI	CTAG	4 cut(s)	53, 89, 93, 228
MaeII	ACGT	2 cut(s)	518, 610
MaeIII	GTNAC	3 cut(s)	43, 530, 611
MalI	GATC	1 cut(s)	246
MboI	GATC	1 cut(s)	244
MboII	GAAGA	4 cut(s)	141, 299, 557, 635
MhlI	GDGCHC	3 cut(s)	194, 422, 474
MluCI	AATT	4 cut(s)	98, 208, 324, 546
MlyI	GAGTC	2 cut(s)	393, 421
MnlI	CCTC	7 cut(s)	157, 229, 232, 244, 375, 504, 600
MslI	CAYNNNNRTG	2 cut(s)	11, 338
MspA1I	CMGCKG	1 cut(s)	595
MspI	CCGG	1 cut(s)	431
MspR9I	CCNGG	2 cut(s)	373, 541
MvaI	CCWGG	2 cut(s)	373, 541
MwoI	GCNNNNNNNGC	2 cut(s)	520, 559
NdeII	GATC	1 cut(s)	244
NheI	GCTAGC	1 cut(s)	88
NlaIII	CATG	5 cut(s)	35, 184, 391, 453, 489
NmuCI	GTSAC	3 cut(s)	43, 530, 611
NspI	RCATGY	1 cut(s)	453
NspV	TTCGAA	1 cut(s)	443
OliI	CACNNNNGTG	1 cut(s)	338
PagI	TCATGA	1 cut(s)	387
PfeI	GAWTC	2 cut(s)	19, 307
Pfl23II	CGTACG	1 cut(s)	515
PkrI	GCNGC	2 cut(s)	492, 525
PleI	GAGTC	2 cut(s)	392, 421
PmaCI	CACGTG	1 cut(s)	611
PmlI	CACGTG	1 cut(s)	611
PpsI	GAGTC	2 cut(s)	392, 421
Ppu21I	YACGTR	1 cut(s)	611
Psp124BI	GAGCTC	2 cut(s)	422, 474
Psp6I	CCWGG	2 cut(s)	371, 539
PspCI	CACGTG	1 cut(s)	611
PspGI	CCWGG	2 cut(s)	371, 539
PspLI	CGTACG	1 cut(s)	515
PstNI	CAGNNNCTG	1 cut(s)	316
RsaI	GTAC	1 cut(s)	517
RsaNI	GTAC	1 cut(s)	516
RseI	CAYNNNNRTG	2 cut(s)	11, 338
SacI	GAGCTC	2 cut(s)	422, 474
SalI	GTCGAC	1 cut(s)	184
SatI	GCNGC	2 cut(s)	491, 524
Sau3AI	GATC	1 cut(s)	244
SchI	GAGTC	2 cut(s)	393, 421
ScrFI	CCNGG	2 cut(s)	373, 541
SduI	GDGCHC	3 cut(s)	194, 422, 474
SfuI	TTCGAA	1 cut(s)	443
SmiMI	CAYNNNNRTG	2 cut(s)	11, 338
Sse9I	AATT	4 cut(s)	98, 208, 324, 546
SsiI	CCGC	1 cut(s)	593
SspMI	CTAG	4 cut(s)	53, 89, 93, 228
SstI	GAGCTC	2 cut(s)	422, 474
StyD4I	CCNGG	2 cut(s)	371, 539
TaaI	ACNGT	3 cut(s)	176, 318, 340
TaiI	ACGT	2 cut(s)	521, 613
TaqI	TCGA	3 cut(s)	185, 198, 443
TasI	AATT	4 cut(s)	98, 208, 324, 546
TfiI	GAWTC	2 cut(s)	19, 307
TscAI	CASTG	4 cut(s)	114, 345, 502, 541
TseFI	GTSAC	3 cut(s)	43, 530, 611
TseI	GCWGC	2 cut(s)	490, 523
Tsp45I	GTSAC	3 cut(s)	43, 530, 611
TspDTI	ATGAA	5 cut(s)	48, 169, 404, 451, 474
TspGWI	ACGGA	2 cut(s)	213, 287
TspRI	CASTG	4 cut(s)	114, 345, 502, 541
XapI	RAATTY	1 cut(s)	324
XceI	RCATGY	1 cut(s)	453
XmiI	GTMKAC	1 cut(s)	185
XspI	CTAG	4 cut(s)	53, 89, 93, 228

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.