FvH4_4g13960

phosphatase 2C

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0007949
Physical Location & Seq
Reverse (-)
17503376 .. 17507670
4295 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g13960.t2

Sequence Viewer

Length: 1272 bp
ATGGGTTGTGTCCATGGCAAGTGCTGCGGTCGTTTCCCCAAGTCCTCCGACGGCGACCCTCGGGAGTTCAGAGACCACGGTGGAGCGAGGAAGCAGCACATACTCACAGAGAGGTCCTTGGAGATTGTCCCGGTGCCTTCACACAGCTTCAATTTGGAGTACACTGTGCTAACCCAGAAGGGTTACTATCCCGACTCGCCGGATAAGGAGAATCAGGACAGTTTCTGTGTCAAAATCCAGGTGCAAGGTAACCCAAATATCCATTTCTTTGGTGTGTTTGATGGGCATGGTCAATTAGGTACAGAGTGTTCTAGTTTTGTTAAGGATAGGCTGGTTGAGGTGTTAGCAGATGATCCCACATTGCCTTATGACCCTGTGGGGGCTTACCATTCAGCTTTTTTAACCACGAATAATGAGTTGCATAGTAGTGTGATTGATGATACTATGAGTGGTACCACTGCGATTACGGTGCTTGTGGTTGGGAATATGTTGTATGTTGCGAATGTGGGGGATTCGAGAGCTGTGATTGCGGTGAAGGATGGTAATAGGATTGTAGCGGAGGATATGTCTTGTGACCAAACACCGTTTAGGAAAGATGAGTATGAGAGAGTGAAGCTGTCCGGGGCCAGGGTTTTGAGTGTTGATCAAGTGGAAGGGCTTAAGGATCCGAATATTCAGAGTTGGGGTGATGAAGAGAGTGAGGGTGGTGATCCTCCGAGGTTGTGGGTTCCGAATGGGATGTATCCTGGGACTGCGTTTACAAGGAGTGTGGGTGATAGTACTGCTGAGAAGATTGGTGTTGTTGCAACTCCGGAAGTGTCAGTGGTTCAGCTGACTCCGAATCATCTTTTCTTTGTTGTTGCAAGTGATGGGGTTTTCGAGTTCCTCTCAAGCCAAGCTGTTGTGAATATGGCAGCAAAATATTCAGATCCTCGGGATGCATGTGCTGCCATTGCTGGAGAATCATATAAGTTATGGTTGGAAAATGAAAACCGAACAGATGATATAACAATTATCATTGTTCACATCAAAGGCTTGTCTAATTCAGCTGCTGGTGCTTCAGATGGAACAGATGGGAGCACTAATAGAGGTGCAAGGAGGAGGAGGAAAGGGAATTCTGGGTCATCTTTTAACAGCGGGTCGGAAGTTTTCCGTTCAGTGAGAAGTGATTCCTCAGAGATACAGTCTTGTCAGCTTGTGCTTTCGATGAATCGAAACCCGGCTATTGTTGTGCCATCTCCTACATGTCAGAGCCCTAGGAATAGCGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PP2C

Protein Analysis

424

Amino Acids

45.88

Weight (kDa)

5.16

Isoelectric Point (pI)

45.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2C PF00481 82 - 318 2.3e-34 Protein phosphatase 2C
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 452
AccB1I GGYRCC 2 cut(s) 133, 452
AccIII TCCGGA 1 cut(s) 811
AciI CCGC 4 cut(s) 27, 530, 557, 1137
AclWI GGATC 5 cut(s) 347, 659, 672, 704, 923
AcsI RAATTY 1 cut(s) 1114
AcuI CTGAAG 1 cut(s) 1044
AfaI GTAC 4 cut(s) 161, 301, 454, 781
AfiI CCNNNNNNNGG 2 cut(s) 379, 627
AflII CTTAAG 1 cut(s) 659
AflIII ACRYGT 1 cut(s) 1244
AgsI TTSAA 1 cut(s) 151
AjnI CCWGG 3 cut(s) 237, 626, 745
AluBI AGCT 8 cut(s) 147, 395, 521, 616, 832, 899, 1049, 1195
AluI AGCT 8 cut(s) 147, 395, 521, 616, 832, 899, 1049, 1195
Alw21I GWGCWC 1 cut(s) 1082
Alw26I GTCTC 1 cut(s) 66
AlwI GGATC 5 cut(s) 347, 659, 672, 704, 923
AlwNI CAGNNNCTG 2 cut(s) 225, 1052
Ama87I CYCGRG 2 cut(s) 60, 933
Aor13HI TCCGGA 1 cut(s) 811
AoxI GGCC 1 cut(s) 624
ApeKI GCWGC 5 cut(s) 24, 94, 914, 947, 1049
ApoI RAATTY 1 cut(s) 1114
Asp700I GAANNNNTTC 1 cut(s) 1168
Asp718I GGTACC 1 cut(s) 452
AspA2I CCTAGG 1 cut(s) 1256
AspS9I GGNCC 2 cut(s) 114, 624
AsuC2I CCSGG 3 cut(s) 131, 622, 1220
AsuHPI GGTGA 4 cut(s) 544, 698, 719, 785
AvaI CYCGRG 2 cut(s) 60, 933
AvaII GGWCC 1 cut(s) 114
AvrII CCTAGG 1 cut(s) 1256
BamHI GGATCC 1 cut(s) 664
BanI GGYRCC 2 cut(s) 133, 452
BanII GRGCYC 1 cut(s) 1256
Bbv12I GWGCWC 1 cut(s) 1082
BbvI GCAGC 5 cut(s) 11, 106, 926, 934, 1036
BccI CCATC 6 cut(s) 275, 533, 863, 1058, 1067, 1243
BceAI ACGGC 1 cut(s) 67
BcgI CGANNNNNNTGC 2 cut(s) 451, 485
BciT130I CCWGG 3 cut(s) 239, 628, 747
BciVI GTATCC 1 cut(s) 753
BclI TGATCA 1 cut(s) 643
BcnI CCSGG 3 cut(s) 131, 622, 1220
BcoDI GTCTC 1 cut(s) 66
BfaI CTAG 2 cut(s) 312, 1257
BfrI CTTAAG 1 cut(s) 659
BfuI GTATCC 1 cut(s) 753
BisI GCNGC 5 cut(s) 25, 95, 915, 948, 1050
BlnI CCTAGG 1 cut(s) 1256
BlsI GCNGC 5 cut(s) 26, 96, 916, 949, 1051
BmcAI AGTACT 1 cut(s) 781
Bme1390I CCNGG 6 cut(s) 131, 239, 622, 628, 747, 1220
Bme18I GGWCC 1 cut(s) 114
BmeT110I CYCGRG 2 cut(s) 60, 933
BmgT120I GGNCC 2 cut(s) 114, 624
BmiI GGNNCC 5 cut(s) 135, 454, 625, 666, 729
BmrFI CCNGG 6 cut(s) 131, 239, 622, 628, 747, 1220
BmsI GCATC 1 cut(s) 928
BplI GAGNNNNNCTC 2 cut(s) 872, 904
BpmI CTGGAG 1 cut(s) 978
BpuEI CTTGAG 1 cut(s) 874
BpuMI CCSGG 3 cut(s) 131, 622, 1220
BsaI GGTCTC 1 cut(s) 66
BsaWI WCCGGW 1 cut(s) 811
BsaXI ACNNNNNCTCC 4 cut(s) 551, 581, 757, 787
Bsc4I CCNNNNNNNGG 2 cut(s) 379, 627
Bse3DI GCAATG 2 cut(s) 359, 951
BseAI TCCGGA 1 cut(s) 811
BseBI CCWGG 3 cut(s) 239, 628, 747
BseGI GGATG 3 cut(s) 544, 744, 943
BseLI CCNNNNNNNGG 2 cut(s) 379, 627
BseMI GCAATG 2 cut(s) 359, 951
BseMII CTCAG 2 cut(s) 777, 1188
BseRI GAGGAG 2 cut(s) 1114, 1117
BseXI GCAGC 5 cut(s) 11, 106, 926, 934, 1036
Bsh1285I CGRYCG 1 cut(s) 31
BshFI GGCC 1 cut(s) 626
BshNI GGYRCC 2 cut(s) 133, 452
BsiEI CGRYCG 1 cut(s) 31
BsiHKAI GWGCWC 1 cut(s) 1082
BsiHKCI CYCGRG 2 cut(s) 60, 933
BsiSI CCGG 5 cut(s) 131, 200, 621, 812, 1220
BslFI GGGAC 2 cut(s) 113, 763
BslI CCNNNNNNNGG 2 cut(s) 379, 627
BsmAI GTCTC 1 cut(s) 66
BsmFI GGGAC 2 cut(s) 113, 763
BsnI GGCC 1 cut(s) 626
Bso31I GGTCTC 1 cut(s) 66
BsoBI CYCGRG 2 cut(s) 60, 933
Bsp1286I GDGCHC 2 cut(s) 1082, 1256
Bsp13I TCCGGA 1 cut(s) 811
Bsp143I GATC 5 cut(s) 352, 643, 664, 709, 928
Bsp19I CCATGG 1 cut(s) 13
BspACI CCGC 4 cut(s) 27, 530, 557, 1137
BspANI GGCC 1 cut(s) 626
BspCNI CTCAG 2 cut(s) 778, 1187
BspEI TCCGGA 1 cut(s) 811
BspLI GGNNCC 5 cut(s) 135, 454, 625, 666, 729
BspPI GGATC 5 cut(s) 347, 659, 672, 704, 923
BspT107I GGYRCC 2 cut(s) 133, 452
BspTI CTTAAG 1 cut(s) 659
BspTNI GGTCTC 1 cut(s) 66
BsrDI GCAATG 2 cut(s) 359, 951
BssMI GATC 5 cut(s) 352, 643, 664, 709, 928
BssT1I CCWWGG 3 cut(s) 13, 117, 1256
Bst2UI CCWGG 3 cut(s) 239, 628, 747
Bst4CI ACNGT 6 cut(s) 80, 166, 221, 469, 585, 1185
Bst6I CTCTTC 1 cut(s) 687
BstAFI CTTAAG 1 cut(s) 659
BstAPI GCANNNNNTGC 2 cut(s) 24, 947
BstDEI CTNAG 2 cut(s) 786, 1174
BstDSI CCRYGG 2 cut(s) 13, 76
BstEII GGTNACC 1 cut(s) 248
BstF5I GGATG 3 cut(s) 544, 744, 943
BstKTI GATC 5 cut(s) 355, 646, 667, 712, 931
BstMAI GTCTC 1 cut(s) 66
BstMBI GATC 5 cut(s) 352, 643, 664, 709, 928
BstMCI CGRYCG 1 cut(s) 31
BstMWI GCNNNNNNNGC 5 cut(s) 24, 527, 947, 953, 1055
BstNI CCWGG 3 cut(s) 239, 628, 747
BstNSI RCATGY 2 cut(s) 945, 1248
BstPI GGTNACC 1 cut(s) 248
BstSCI CCNGG 6 cut(s) 129, 237, 620, 626, 745, 1218
BstV1I GCAGC 5 cut(s) 11, 106, 926, 934, 1036
BstX2I RGATCY 2 cut(s) 664, 928
BstXI CCANNNNNNTGG 1 cut(s) 269
BstYI RGATCY 2 cut(s) 664, 928
BsuI GTATCC 1 cut(s) 753
BsuRI GGCC 1 cut(s) 626
BtgI CCRYGG 2 cut(s) 13, 76
BtsCI GGATG 3 cut(s) 544, 744, 943
BtsI GCAGTG 1 cut(s) 456
BtsIMutI CAGTG 4 cut(s) 162, 456, 828, 1164
CaiI CAGNNNCTG 2 cut(s) 225, 1052
Cfr13I GGNCC 2 cut(s) 114, 624
Csp6I GTAC 4 cut(s) 160, 300, 453, 780
CspCI CAANNNNNGTGG 2 cut(s) 750, 785
CviAII CATG 4 cut(s) 14, 287, 942, 1245
CviQI GTAC 4 cut(s) 160, 300, 453, 780
DdeI CTNAG 2 cut(s) 786, 1174
DpnI GATC 5 cut(s) 354, 645, 666, 711, 930
DpnII GATC 5 cut(s) 352, 643, 664, 709, 928
Eam1104I CTCTTC 1 cut(s) 687
EarI CTCTTC 1 cut(s) 687
Eco130I CCWWGG 3 cut(s) 13, 117, 1256
Eco24I GRGCYC 1 cut(s) 1256
Eco31I GGTCTC 1 cut(s) 66
Eco47I GGWCC 1 cut(s) 114
Eco57I CTGAAG 1 cut(s) 1044
Eco88I CYCGRG 2 cut(s) 60, 933
Eco91I GGTNACC 1 cut(s) 248
EcoO109I RGGNCCY 1 cut(s) 114
EcoO65I GGTNACC 1 cut(s) 248
EcoRI GAATTC 1 cut(s) 1114
EcoRII CCWGG 3 cut(s) 237, 626, 745
EcoT14I CCWWGG 3 cut(s) 13, 117, 1256
EcoT22I ATGCAT 1 cut(s) 943
EcoT38I GRGCYC 1 cut(s) 1256
ErhI CCWWGG 3 cut(s) 13, 117, 1256
FaeI CATG 4 cut(s) 17, 290, 945, 1248
FaqI GGGAC 2 cut(s) 113, 763
FatI CATG 4 cut(s) 13, 286, 941, 1244
FauI CCCGC 1 cut(s) 1130
FbaI TGATCA 1 cut(s) 643
Fnu4HI GCNGC 5 cut(s) 25, 95, 915, 948, 1050
FokI GGATG 3 cut(s) 551, 751, 950
FriOI GRGCYC 1 cut(s) 1256
Fsp4HI GCNGC 5 cut(s) 25, 95, 915, 948, 1050
FspBI CTAG 2 cut(s) 312, 1257
GluI GCNGC 5 cut(s) 25, 95, 915, 948, 1050
GsuI CTGGAG 1 cut(s) 978
HaeIII GGCC 1 cut(s) 626
HapII CCGG 5 cut(s) 131, 200, 621, 812, 1220
Hin1II CATG 4 cut(s) 17, 290, 945, 1248
HinfI GANTC 8 cut(s) 194, 211, 512, 835, 841, 962, 1169, 1210
HpaII CCGG 5 cut(s) 131, 200, 621, 812, 1220
HphI GGTGA 4 cut(s) 544, 698, 719, 785
Hpy166II GTNNAC 3 cut(s) 162, 759, 1024
Hpy188III TCNNGA 6 cut(s) 62, 191, 215, 516, 812, 935
Hpy8I GTNNAC 3 cut(s) 162, 759, 1024
Hpy99I CGWCG 1 cut(s) 53
HpyAV CCTTC 4 cut(s) 147, 172, 529, 647
HpyCH4III ACNGT 6 cut(s) 80, 166, 221, 469, 585, 1185
HpyCH4V TGCA 6 cut(s) 244, 421, 806, 863, 941, 1094
HpyF10VI GCNNNNNNNGC 5 cut(s) 24, 527, 947, 953, 1055
HpyF3I CTNAG 2 cut(s) 786, 1174
Hsp92II CATG 4 cut(s) 17, 290, 945, 1248
Kpn2I TCCGGA 1 cut(s) 811
KpnI GGTACC 1 cut(s) 456
Ksp22I TGATCA 1 cut(s) 643
Kzo9I GATC 5 cut(s) 352, 643, 664, 709, 928
LmnI GCTCC 2 cut(s) 83, 1077
Lsp1109I GCAGC 5 cut(s) 11, 106, 926, 934, 1036
LweI GCATC 1 cut(s) 928
MaeI CTAG 2 cut(s) 312, 1257
MaeIII GTNAC 3 cut(s) 182, 248, 572
MalI GATC 5 cut(s) 354, 645, 666, 711, 930
MboI GATC 5 cut(s) 352, 643, 664, 709, 928
MboII GAAGA 2 cut(s) 704, 802
MflI RGATCY 2 cut(s) 664, 928
MhlI GDGCHC 2 cut(s) 1082, 1256
MluCI AATT 5 cut(s) 151, 293, 1011, 1042, 1114
MlyI GAGTC 2 cut(s) 188, 829
MmeI TCCRAC 3 cut(s) 72, 960, 1122
Mph1103I ATGCAT 1 cut(s) 943
MroI TCCGGA 1 cut(s) 811
MroXI GAANNNNTTC 1 cut(s) 1168
MseI TTAA 4 cut(s) 321, 401, 660, 1131
MslI CAYNNNNRTG 1 cut(s) 426
MspA1I CMGCKG 3 cut(s) 832, 1049, 1137
MspCI CTTAAG 1 cut(s) 659
MspI CCGG 5 cut(s) 131, 200, 621, 812, 1220
MspR9I CCNGG 6 cut(s) 131, 239, 622, 628, 747, 1220
MvaI CCWGG 3 cut(s) 239, 628, 747
MwoI GCNNNNNNNGC 5 cut(s) 24, 527, 947, 953, 1055
NciI CCSGG 3 cut(s) 131, 622, 1220
NcoI CCATGG 1 cut(s) 13
NdeII GATC 5 cut(s) 352, 643, 664, 709, 928
NlaIII CATG 4 cut(s) 17, 290, 945, 1248
NlaIV GGNNCC 5 cut(s) 135, 454, 625, 666, 729
NmuCI GTSAC 1 cut(s) 572
NsiI ATGCAT 1 cut(s) 943
NspI RCATGY 2 cut(s) 945, 1248
PciI ACATGT 1 cut(s) 1244
PdmI GAANNNNTTC 1 cut(s) 1168
PfeI GAWTC 6 cut(s) 211, 512, 841, 962, 1169, 1210
PkrI GCNGC 5 cut(s) 26, 96, 916, 949, 1051
PleI GAGTC 2 cut(s) 188, 829
PpsI GAGTC 2 cut(s) 188, 829
PpuMI RGGWCCY 1 cut(s) 114
PscI ACATGT 1 cut(s) 1244
Psp5II RGGWCCY 1 cut(s) 114
Psp6I CCWGG 3 cut(s) 237, 626, 745
PspEI GGTNACC 1 cut(s) 248
PspGI CCWGG 3 cut(s) 237, 626, 745
PspN4I GGNNCC 5 cut(s) 135, 454, 625, 666, 729
PspPI GGNCC 2 cut(s) 114, 624
PspPPI RGGWCCY 1 cut(s) 114
PsrI GAACNNNNNNTAC 2 cut(s) 292, 324
PstNI CAGNNNCTG 2 cut(s) 225, 1052
PsuI RGATCY 2 cut(s) 664, 928
PvuII CAGCTG 2 cut(s) 832, 1049
RsaI GTAC 4 cut(s) 161, 301, 454, 781
RsaNI GTAC 4 cut(s) 160, 300, 453, 780
RseI CAYNNNNRTG 1 cut(s) 426
SaqAI TTAA 4 cut(s) 321, 401, 660, 1131
SatI GCNGC 5 cut(s) 25, 95, 915, 948, 1050
Sau3AI GATC 5 cut(s) 352, 643, 664, 709, 928
Sau96I GGNCC 2 cut(s) 114, 624
ScaI AGTACT 1 cut(s) 781
SchI GAGTC 2 cut(s) 188, 829
ScrFI CCNGG 6 cut(s) 131, 239, 622, 628, 747, 1220
SduI GDGCHC 2 cut(s) 1082, 1256
SfaNI GCATC 1 cut(s) 928
SinI GGWCC 1 cut(s) 114
SmiMI CAYNNNNRTG 1 cut(s) 426
SmlI CTYRAG 2 cut(s) 659, 889
SmoI CTYRAG 2 cut(s) 659, 889
Sse9I AATT 5 cut(s) 151, 293, 1011, 1042, 1114
SsiI CCGC 4 cut(s) 27, 530, 557, 1137
SspI AATATT 2 cut(s) 673, 923
SspMI CTAG 2 cut(s) 312, 1257
StyD4I CCNGG 6 cut(s) 129, 237, 620, 626, 745, 1218
StyI CCWWGG 3 cut(s) 13, 117, 1256
TaaI ACNGT 6 cut(s) 80, 166, 221, 469, 585, 1185
TaqI TCGA 4 cut(s) 515, 879, 1205, 1213
TasI AATT 5 cut(s) 151, 293, 1011, 1042, 1114
TatI WGTACW 2 cut(s) 159, 779
TfiI GAWTC 6 cut(s) 211, 512, 841, 962, 1169, 1210
Tru1I TTAA 4 cut(s) 321, 401, 660, 1131
Tru9I TTAA 4 cut(s) 321, 401, 660, 1131
TscAI CASTG 4 cut(s) 169, 463, 828, 1164
TseFI GTSAC 1 cut(s) 572
TseI GCWGC 5 cut(s) 24, 94, 914, 947, 1049
Tsp45I GTSAC 1 cut(s) 572
TspDTI ATGAA 3 cut(s) 705, 1002, 1223
TspGWI ACGGA 1 cut(s) 1142
TspRI CASTG 4 cut(s) 169, 463, 828, 1164
Vha464I CTTAAG 1 cut(s) 659
VpaK11BI GGWCC 1 cut(s) 114
XapI RAATTY 1 cut(s) 1114
XceI RCATGY 2 cut(s) 945, 1248
XmaJI CCTAGG 1 cut(s) 1256
XmnI GAANNNNTTC 1 cut(s) 1168
XspI CTAG 2 cut(s) 312, 1257
ZrmI AGTACT 1 cut(s) 781
Zsp2I ATGCAT 1 cut(s) 943
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.