Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0007949

Physical Location & Seq

Genomic Coordinates Reverse (-)

27852558 .. 27855688

Gene Structure 3131 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0159800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

ATGTGGCTACAGCTTACTAATATACCTTTTGCTATAGCTAATTTAAATGGGGAAATAGGAGCTGGAGGGGTTCTTAGATATCATTATGGTAACTGGATACATGGATTTGTTGCTCATCTTGGGCATGGTCAGGTTTTGGAAGTTGAGACATGGGGTATGTTATTGGGATTACAAATGGTTGCTGATCTTGAAATGGATAAAGTTGCCCTGGAATGTGATTCTGAAGTGTTGGTTAATCTGATGAATAGTGAATTTGATGATATGCACCCTGTGAAGACGATGCCCTTTCAAGATGCAATTTATCTGCTGAGAAGTTTTGTTAGGTTTGGGGCTGAAAATGAGAGGACAAAGGCCATTGTGGAAATGAATGGTGCATATTGTTCGAGCAGGCCCATGCATATAGGTGTTGCAATGCCAAAAAATCATCTGGATATCAACAACAGTACTCTTCACAAGGATTGGTATTGGCTGGAGGTGGTGGACATGCAAATGCCAAATGGTGCCATTGCCCAAGGTTCTCAGTCTGATGGCGAGCCCAATAACACAACTATATTTGTTGGACGGCTTGATTCTGATGTCAATGAGGAAGACCTCAGGCCACCATTTTCTCAATTTGGTGAAGTTGTCTCTGCAAAAATACCGGTTGGAAAAGCATGCGGTTTTGTTCAGTTTGCTAATAGGAAGGATGCTGAGAATGCAATGAATATGCTAAATGCAACTGTTATTGGAAAGCAAACAGTTCGTCTGTCTTGGGGTTGCAGTCAAGGCAACAAGCTCCCTATTGCATGGAGATCGGACTCAAGTAACCAGTGGAACAATGGAGGACATTATGGAGGGCAGGGGTATGGTGGGTACGCAAATGCTGCGCCACAGAATCCAGATCTGAGTATGCATGCTGCAGCTGCCGTTAACGGGTCTTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP2C

Protein Analysis

307

Amino Acids

33.68

Weight (kDa)

5.21

Isoelectric Point (pI)

47.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RVT_3	PF13456	19 - 109	2.9e-12	Reverse transcriptase-like
RRM_1	PF00076	184 - 247	1.8e-15	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007949)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06270
fragaria_vesca	FvH4_4g13960 FvH4_4g13960 FvH4_4g13960 FvH4_4g13960 FvH4_4g13960 FvH4_4g13960
malus_domestica	MD13G1178700.v1.1 MD16G1179900.v1.1
prunus_persica	Prupe.1G147500_v2.0.a1 Prupe.1G147500_v2.0.a1
pyrus_communis	pycom13g15430 pycom16g15100
rosa_chinensis	RchiOBHm_Chr4g0419711
rosa_laevigata	RLG00000007802
rosa_multiflora	Rmu_sc0016868.1_g000009
rosa_roxburghii	Rroxscaffold_5G00362550
rosa_rugosa	Rorug04G0159800 Rorug04G0159900
rosa_samantha	Rh4AG221100 Rh4BG223100 Rh4CG234400 Rh4DG220100
rosa_wichuraiana	Rw4G019030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	500
AciI	CCGC	1 cut(s)	657
AcsI	RAATTY	1 cut(s)	251
AcuI	CTGAAG	1 cut(s)	243
AdeI	CACNNNGTG	1 cut(s)	271
AfaI	GTAC	2 cut(s)	445, 854
AfiI	CCNNNNNNNGG	1 cut(s)	912
AgeI	ACCGGT	1 cut(s)	640
AgsI	TTSAA	2 cut(s)	191, 290
AjnI	CCWGG	1 cut(s)	207
AluBI	AGCT	5 cut(s)	13, 38, 62, 775, 902
AluI	AGCT	5 cut(s)	13, 38, 62, 775, 902
Alw26I	GTCTC	2 cut(s)	140, 631
AoxI	GGCC	3 cut(s)	351, 389, 596
ApeKI	GCWGC	4 cut(s)	863, 896, 899, 902
ApoI	RAATTY	1 cut(s)	251
ArsI	GACNNNNNNTTYG	2 cut(s)	727, 759
AsiGI	ACCGGT	1 cut(s)	640
AspLEI	GCGC	1 cut(s)	868
AspS9I	GGNCC	1 cut(s)	390
AsuHPI	GGTGA	1 cut(s)	629
AxyI	CCTNAGG	1 cut(s)	593
BanI	GGYRCC	1 cut(s)	500
BanII	GRGCYC	1 cut(s)	537
BbsI	GAAGAC	3 cut(s)	281, 594, 909
BbvI	GCAGC	4 cut(s)	850, 883, 889, 911
BccI	CCATC	1 cut(s)	521
BceAI	ACGGC	2 cut(s)	578, 890
BcgI	CGANNNNNNTGC	6 cut(s)	363, 397, 722, 756, 774, 808
BciT130I	CCWGG	1 cut(s)	209
BciVI	GTATCC	1 cut(s)	90
BcoDI	GTCTC	2 cut(s)	140, 631
BfmI	CTRYAG	3 cut(s)	8, 33, 897
BfuI	GTATCC	1 cut(s)	90
BglII	AGATCT	1 cut(s)	880
BisI	GCNGC	4 cut(s)	864, 897, 900, 903
BlsI	GCNGC	4 cut(s)	865, 898, 901, 904
BmcAI	AGTACT	1 cut(s)	445
Bme1390I	CCNGG	1 cut(s)	209
BmgT120I	GGNCC	1 cut(s)	390
BmiI	GGNNCC	1 cut(s)	502
BmrFI	CCNGG	1 cut(s)	209
BmsI	GCATC	3 cut(s)	270, 283, 676
BpiI	GAAGAC	3 cut(s)	281, 594, 909
BpmI	CTGGAG	2 cut(s)	84, 491
BpuEI	CTTGAG	1 cut(s)	784
BsaJI	CCNNGG	2 cut(s)	207, 511
BsaWI	WCCGGW	1 cut(s)	640
Bsc4I	CCNNNNNNNGG	1 cut(s)	912
Bse118I	RCCGGY	1 cut(s)	640
Bse1I	ACTGG	2 cut(s)	98, 808
Bse21I	CCTNAGG	1 cut(s)	593
Bse3DI	GCAATG	3 cut(s)	417, 504, 705
BseBI	CCWGG	1 cut(s)	209
BseDI	CCNNGG	2 cut(s)	207, 511
BseGI	GGATG	1 cut(s)	691
BseLI	CCNNNNNNNGG	1 cut(s)	912
BseMI	GCAATG	3 cut(s)	417, 504, 705
BseMII	CTCAG	5 cut(s)	299, 533, 607, 681, 875
BseNI	ACTGG	2 cut(s)	98, 808
BseXI	GCAGC	4 cut(s)	850, 883, 889, 911
BshFI	GGCC	3 cut(s)	353, 391, 598
BshNI	GGYRCC	1 cut(s)	500
BshTI	ACCGGT	1 cut(s)	640
BsiSI	CCGG	1 cut(s)	641
BslI	CCNNNNNNNGG	1 cut(s)	912
BsmAI	GTCTC	2 cut(s)	140, 631
BsmI	GAATGC	1 cut(s)	700
BsnI	GGCC	3 cut(s)	353, 391, 598
Bsp1286I	GDGCHC	1 cut(s)	537
Bsp143I	GATC	3 cut(s)	184, 791, 880
BspACI	CCGC	1 cut(s)	657
BspANI	GGCC	3 cut(s)	353, 391, 598
BspCNI	CTCAG	5 cut(s)	300, 532, 606, 682, 876
BspLI	GGNNCC	1 cut(s)	502
BspMAI	CTGCAG	1 cut(s)	901
BspT107I	GGYRCC	1 cut(s)	500
BsrDI	GCAATG	3 cut(s)	417, 504, 705
BsrFI	RCCGGY	1 cut(s)	640
BsrI	ACTGG	2 cut(s)	98, 808
BssAI	RCCGGY	1 cut(s)	640
BssECI	CCNNGG	2 cut(s)	207, 511
BssMI	GATC	3 cut(s)	184, 791, 880
BssT1I	CCWWGG	1 cut(s)	511
Bst2UI	CCWGG	1 cut(s)	209
Bst4CI	ACNGT	3 cut(s)	443, 721, 739
Bst6I	CTCTTC	1 cut(s)	453
BstAPI	GCANNNNNTGC	1 cut(s)	863
BstC8I	GCNNGC	4 cut(s)	389, 533, 655, 894
BstDEI	CTNAG	6 cut(s)	74, 308, 519, 593, 690, 884
BstF5I	GGATG	1 cut(s)	691
BstHHI	GCGC	1 cut(s)	868
BstKTI	GATC	3 cut(s)	187, 794, 883
BstMAI	GTCTC	2 cut(s)	140, 631
BstMBI	GATC	3 cut(s)	184, 791, 880
BstMWI	GCNNNNNNNGC	4 cut(s)	695, 765, 863, 902
BstNI	CCWGG	1 cut(s)	209
BstNSI	RCATGY	3 cut(s)	487, 657, 896
BstSCI	CCNGG	1 cut(s)	207
BstSFI	CTRYAG	3 cut(s)	8, 33, 897
BstV1I	GCAGC	4 cut(s)	850, 883, 889, 911
BstV2I	GAAGAC	3 cut(s)	281, 594, 909
BstX2I	RGATCY	1 cut(s)	880
BstYI	RGATCY	1 cut(s)	880
Bsu36I	CCTNAGG	1 cut(s)	593
BsuI	GTATCC	1 cut(s)	90
BsuRI	GGCC	3 cut(s)	353, 391, 598
BtsCI	GGATG	1 cut(s)	691
BtsIMutI	CAGTG	1 cut(s)	815
Cac8I	GCNNGC	4 cut(s)	389, 533, 655, 894
CfoI	GCGC	1 cut(s)	868
Cfr10I	RCCGGY	1 cut(s)	640
Cfr13I	GGNCC	1 cut(s)	390
Csp6I	GTAC	2 cut(s)	444, 853
CspAI	ACCGGT	1 cut(s)	640
CviAII	CATG	8 cut(s)	101, 125, 150, 394, 484, 654, 786, 893
CviQI	GTAC	2 cut(s)	444, 853
DdeI	CTNAG	6 cut(s)	74, 308, 519, 593, 690, 884
DpnI	GATC	3 cut(s)	186, 793, 882
DpnII	GATC	3 cut(s)	184, 791, 880
DraI	TTTAAA	1 cut(s)	45
DraIII	CACNNNGTG	1 cut(s)	271
Eam1104I	CTCTTC	1 cut(s)	453
EarI	CTCTTC	1 cut(s)	453
Eco130I	CCWWGG	1 cut(s)	511
Eco24I	GRGCYC	1 cut(s)	537
Eco32I	GATATC	2 cut(s)	80, 433
Eco57I	CTGAAG	1 cut(s)	243
Eco81I	CCTNAGG	1 cut(s)	593
EcoRII	CCWGG	1 cut(s)	207
EcoRV	GATATC	2 cut(s)	80, 433
EcoT14I	CCWWGG	1 cut(s)	511
EcoT22I	ATGCAT	2 cut(s)	399, 894
EcoT38I	GRGCYC	1 cut(s)	537
ErhI	CCWWGG	1 cut(s)	511
FaeI	CATG	8 cut(s)	104, 128, 153, 397, 487, 657, 789, 896
FatI	CATG	8 cut(s)	100, 124, 149, 393, 483, 653, 785, 892
Fnu4HI	GCNGC	4 cut(s)	864, 897, 900, 903
FokI	GGATG	1 cut(s)	698
FriOI	GRGCYC	1 cut(s)	537
Fsp4HI	GCNGC	4 cut(s)	864, 897, 900, 903
GlaI	GCGC	1 cut(s)	867
GluI	GCNGC	4 cut(s)	864, 897, 900, 903
GsuI	CTGGAG	2 cut(s)	84, 491
HaeIII	GGCC	3 cut(s)	353, 391, 598
HapII	CCGG	1 cut(s)	641
HhaI	GCGC	1 cut(s)	868
Hin1II	CATG	8 cut(s)	104, 128, 153, 397, 487, 657, 789, 896
Hin6I	GCGC	1 cut(s)	866
HinP1I	GCGC	1 cut(s)	866
HincII	GTYRAC	1 cut(s)	910
HindII	GTYRAC	1 cut(s)	910
HinfI	GANTC	4 cut(s)	218, 569, 797, 874
HpaI	GTTAAC	1 cut(s)	910
HpaII	CCGG	1 cut(s)	641
HphI	GGTGA	1 cut(s)	629
Hpy166II	GTNNAC	2 cut(s)	481, 910
Hpy188I	TCNGA	6 cut(s)	223, 240, 526, 574, 796, 885
Hpy188III	TCNNGA	4 cut(s)	188, 290, 428, 878
Hpy8I	GTNNAC	2 cut(s)	481, 910
HpyAV	CCTTC	1 cut(s)	676
HpyCH4III	ACNGT	3 cut(s)	443, 721, 739
HpyF10VI	GCNNNNNNNGC	4 cut(s)	695, 765, 863, 902
HpyF3I	CTNAG	6 cut(s)	74, 308, 519, 593, 690, 884
Hsp92II	CATG	8 cut(s)	104, 128, 153, 397, 487, 657, 789, 896
HspAI	GCGC	1 cut(s)	866
KspAI	GTTAAC	1 cut(s)	910
Kzo9I	GATC	3 cut(s)	184, 791, 880
LmnI	GCTCC	2 cut(s)	59, 780
Lsp1109I	GCAGC	4 cut(s)	850, 883, 889, 911
LweI	GCATC	3 cut(s)	270, 283, 676
MaeIII	GTNAC	2 cut(s)	89, 803
MalI	GATC	3 cut(s)	186, 793, 882
MboI	GATC	3 cut(s)	184, 791, 880
MboII	GAAGA	4 cut(s)	286, 440, 599, 909
MflI	RGATCY	1 cut(s)	880
MhlI	GDGCHC	1 cut(s)	537
MluCI	AATT	4 cut(s)	40, 251, 297, 611
MlyI	GAGTC	1 cut(s)	791
MmeI	TCCRAC	2 cut(s)	538, 625
MnlI	CCTC	7 cut(s)	59, 336, 466, 577, 602, 815, 827
Mph1103I	ATGCAT	2 cut(s)	399, 894
MseI	TTAA	4 cut(s)	44, 234, 909, 922
MslI	CAYNNNNRTG	2 cut(s)	402, 488
MspA1I	CMGCKG	1 cut(s)	902
MspI	CCGG	1 cut(s)	641
MspR9I	CCNGG	1 cut(s)	209
Mva1269I	GAATGC	1 cut(s)	700
MvaI	CCWGG	1 cut(s)	209
MwoI	GCNNNNNNNGC	4 cut(s)	695, 765, 863, 902
NdeII	GATC	3 cut(s)	184, 791, 880
NlaIII	CATG	8 cut(s)	104, 128, 153, 397, 487, 657, 789, 896
NlaIV	GGNNCC	1 cut(s)	502
NsiI	ATGCAT	2 cut(s)	399, 894
NspI	RCATGY	3 cut(s)	487, 657, 896
PaeI	GCATGC	2 cut(s)	657, 896
PctI	GAATGC	1 cut(s)	700
PfeI	GAWTC	3 cut(s)	218, 569, 874
PinAI	ACCGGT	1 cut(s)	640
PkrI	GCNGC	4 cut(s)	865, 898, 901, 904
PleI	GAGTC	1 cut(s)	791
PpsI	GAGTC	1 cut(s)	791
Psp6I	CCWGG	1 cut(s)	207
PspGI	CCWGG	1 cut(s)	207
PspN4I	GGNNCC	1 cut(s)	502
PspPI	GGNCC	1 cut(s)	390
PstI	CTGCAG	1 cut(s)	901
PsuI	RGATCY	1 cut(s)	880
PvuII	CAGCTG	1 cut(s)	902
RsaI	GTAC	2 cut(s)	445, 854
RsaNI	GTAC	2 cut(s)	444, 853
RseI	CAYNNNNRTG	2 cut(s)	402, 488
SaqAI	TTAA	4 cut(s)	44, 234, 909, 922
SatI	GCNGC	4 cut(s)	864, 897, 900, 903
Sau3AI	GATC	3 cut(s)	184, 791, 880
Sau96I	GGNCC	1 cut(s)	390
ScaI	AGTACT	1 cut(s)	445
SchI	GAGTC	1 cut(s)	791
ScrFI	CCNGG	1 cut(s)	209
SduI	GDGCHC	1 cut(s)	537
SfaNI	GCATC	3 cut(s)	270, 283, 676
SfcI	CTRYAG	3 cut(s)	8, 33, 897
SmiI	ATTTAAAT	1 cut(s)	45
SmiMI	CAYNNNNRTG	2 cut(s)	402, 488
SmlI	CTYRAG	1 cut(s)	799
SmoI	CTYRAG	1 cut(s)	799
SphI	GCATGC	2 cut(s)	657, 896
Sse9I	AATT	4 cut(s)	40, 251, 297, 611
SsiI	CCGC	1 cut(s)	657
StyD4I	CCNGG	1 cut(s)	207
StyI	CCWWGG	1 cut(s)	511
SwaI	ATTTAAAT	1 cut(s)	45
TaaI	ACNGT	3 cut(s)	443, 721, 739
TaqI	TCGA	1 cut(s)	383
TasI	AATT	4 cut(s)	40, 251, 297, 611
TatI	WGTACW	1 cut(s)	443
TfiI	GAWTC	3 cut(s)	218, 569, 874
Tru1I	TTAA	4 cut(s)	44, 234, 909, 922
Tru9I	TTAA	4 cut(s)	44, 234, 909, 922
TscAI	CASTG	1 cut(s)	815
TseI	GCWGC	4 cut(s)	863, 896, 899, 902
TspDTI	ATGAA	3 cut(s)	257, 380, 716
TspRI	CASTG	1 cut(s)	815
XapI	RAATTY	1 cut(s)	251
XceI	RCATGY	3 cut(s)	487, 657, 896
XcmI	CCANNNNNNNNNTGG	1 cut(s)	815
ZrmI	AGTACT	1 cut(s)	445
Zsp2I	ATGCAT	2 cut(s)	399, 894

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.