Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0016868.1

Orthogroup ID

OG0007949

Physical Location & Seq

Genomic Coordinates Reverse (-)

50324 .. 53659

Gene Structure 3336 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0016868.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1248 bp

atgggttgtgtccatggcaagtgttgcggtcgttttcccaagtcctccgacggcgatccccgggaattcagagactccggaccctacagcgctcagaggaagcagcacatactcacagagaggtcattggagttggtccccgttccttcacacggcttcaatttggagtacactgtcctaacgcagaggggttactatcccgactcgcctgataaggataatcaggacagtttctgtgttaaaacacagcttcaaggtaacccaaatatccacttctttggtgtgtttgatgggcatggtcaatttggcacccagtgtgctaatcttgttaaggatagactggtagaggttttagcagatgatcccacattgcctgatgaccctgtggaagcttataattctgcttttttaaccacgaatagcgagctgcatagtagtgtaattgatgatactatgagtggtaccacggcgattactgtgcttgtggttgggaatacgctgtatgttgcgaatgtgggtgattcgagagcagtgattgcggtgaaagatggtaataggattattgcagaggatttgtcttgtgaccaaacgccatttaggaaagatgagtatgagagagtgaagcagtctggagccagggttttgagtgttgatcaagtggaagggcttaaggatccaagcattcagagttggggtgatgaagagagtgaagggggtgatcctccaaggctgtgggttcaaaatggtatgtatcctgggactgcatttacaaggagcgttggtgatagtactgccgagaagattggtgttgttgcaactccggaagtgtctatggttcagctgactcccaatcatcttttctttgtcgttgcaagtgatggggttttcgagttcctctcaagccaagctgttgttaatatggcagcaaaatattcagatcctcgggatgcatgtgctgccattgctggagaatcatataagttatgtcagctggtggtgctacagatggaacagatgggagcactaatagagctgcaaggaggaggagaaaagggaattctgggtcatcatttaacagcgctattgttgttccatctcctacatgtcaaagccctagaaatagtgtttgaactgaaaggtgttgcagaagttgccacacatcttcttgttatttttctcaagtggatgcgggttagtggtgcaattcaaccaacaacagaagcagttggttctgcatatactgtataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP2C

Protein Analysis

415

Amino Acids

45.14

Weight (kDa)

4.96

Isoelectric Point (pI)

32.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007949)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06270
fragaria_vesca	FvH4_4g13960 FvH4_4g13960 FvH4_4g13960 FvH4_4g13960 FvH4_4g13960 FvH4_4g13960
malus_domestica	MD13G1178700.v1.1 MD16G1179900.v1.1
prunus_persica	Prupe.1G147500_v2.0.a1 Prupe.1G147500_v2.0.a1
pyrus_communis	pycom13g15430 pycom16g15100
rosa_chinensis	RchiOBHm_Chr4g0419711
rosa_laevigata	RLG00000007802
rosa_multiflora	Rmu_sc0016868.1_g000009
rosa_roxburghii	Rroxscaffold_5G00362550
rosa_rugosa	Rorug04G0159800 Rorug04G0159900
rosa_samantha	Rh4AG221100 Rh4BG223100 Rh4CG234400 Rh4DG220100
rosa_wichuraiana	Rw4G019030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	396
Acc65I	GGTACC	1 cut(s)	461
AccB1I	GGYRCC	2 cut(s)	308, 461
AccIII	TCCGGA	2 cut(s)	77, 820
AciI	CCGC	3 cut(s)	27, 539, 1189
AclWI	GGATC	6 cut(s)	50, 356, 668, 681, 713, 932
AcsI	RAATTY	2 cut(s)	65, 1056
AdeI	CACNNNGTG	1 cut(s)	315
AfaI	GTAC	3 cut(s)	170, 463, 790
AfeI	AGCGCT	2 cut(s)	91, 1080
AfiI	CCNNNNNNNGG	1 cut(s)	152
AflII	CTTAAG	1 cut(s)	668
AflIII	ACRYGT	1 cut(s)	1102
AgsI	TTSAA	5 cut(s)	160, 254, 740, 1130, 1208
AjnI	CCWGG	2 cut(s)	635, 754
AjuI	GAANNNNNNNTTGG	2 cut(s)	842, 874
AluBI	AGCT	7 cut(s)	250, 392, 427, 841, 908, 991, 1033
AluI	AGCT	7 cut(s)	250, 392, 427, 841, 908, 991, 1033
Alw21I	GWGCWC	1 cut(s)	1024
Alw26I	GTCTC	1 cut(s)	66
AlwI	GGATC	6 cut(s)	50, 356, 668, 681, 713, 932
AlwNI	CAGNNNCTG	1 cut(s)	234
Ama87I	CYCGRG	2 cut(s)	60, 942
Aor13HI	TCCGGA	2 cut(s)	77, 820
Aor51HI	AGCGCT	2 cut(s)	91, 1080
ApeKI	GCWGC	5 cut(s)	103, 427, 923, 956, 1033
ApoI	RAATTY	2 cut(s)	65, 1056
Asp718I	GGTACC	1 cut(s)	461
AspLEI	GCGC	2 cut(s)	92, 1081
AspS9I	GGNCC	2 cut(s)	80, 136
AsuC2I	CCSGG	2 cut(s)	61, 62
AsuHPI	GGTGA	5 cut(s)	530, 553, 707, 728, 794
AvaI	CYCGRG	2 cut(s)	60, 942
AvaII	GGWCC	2 cut(s)	80, 136
BamHI	GGATCC	1 cut(s)	673
BanI	GGYRCC	2 cut(s)	308, 461
Bbv12I	GWGCWC	1 cut(s)	1024
BbvI	GCAGC	5 cut(s)	115, 414, 935, 943, 1020
BccI	CCATC	6 cut(s)	284, 542, 872, 1000, 1009, 1101
BceAI	ACGGC	3 cut(s)	67, 169, 483
BcgI	CGANNNNNNTGC	2 cut(s)	460, 494
BciT130I	CCWGG	2 cut(s)	637, 756
BciVI	GTATCC	1 cut(s)	762
BclI	TGATCA	1 cut(s)	652
BcnI	CCSGG	2 cut(s)	61, 62
BcoDI	GTCTC	1 cut(s)	66
BfaI	CTAG	1 cut(s)	1115
BfmI	CTRYAG	2 cut(s)	85, 1001
BfoI	RGCGCY	2 cut(s)	93, 1082
BfrI	CTTAAG	1 cut(s)	668
BfuI	GTATCC	1 cut(s)	762
BisI	GCNGC	5 cut(s)	104, 428, 924, 957, 1034
BlsI	GCNGC	5 cut(s)	105, 429, 925, 958, 1035
BmcAI	AGTACT	1 cut(s)	790
Bme1390I	CCNGG	4 cut(s)	61, 62, 637, 756
Bme18I	GGWCC	2 cut(s)	80, 136
BmeT110I	CYCGRG	2 cut(s)	60, 942
BmgT120I	GGNCC	2 cut(s)	80, 136
BmiI	GGNNCC	6 cut(s)	82, 138, 310, 463, 634, 675
BmrFI	CCNGG	4 cut(s)	61, 62, 637, 756
BmrI	ACTGGG	1 cut(s)	307
BmsI	GCATC	2 cut(s)	937, 1176
BmuI	ACTGGG	1 cut(s)	307
BplI	GAGNNNNNCTC	2 cut(s)	881, 913
BpmI	CTGGAG	2 cut(s)	651, 987
BpuEI	CTTGAG	2 cut(s)	883, 1163
BpuMI	CCSGG	2 cut(s)	61, 62
BsaJI	CCNNGG	8 cut(s)	13, 59, 60, 465, 636, 725, 755, 941
BsaWI	WCCGGW	2 cut(s)	77, 820
BsaXI	ACNNNNNCTCC	4 cut(s)	624, 654, 766, 796
Bsc4I	CCNNNNNNNGG	1 cut(s)	152
Bse1I	ACTGG	2 cut(s)	313, 345
Bse3DI	GCAATG	2 cut(s)	368, 960
BseAI	TCCGGA	2 cut(s)	77, 820
BseBI	CCWGG	2 cut(s)	637, 756
BseDI	CCNNGG	8 cut(s)	13, 59, 60, 465, 636, 725, 755, 941
BseGI	GGATG	2 cut(s)	952, 1191
BseLI	CCNNNNNNNGG	1 cut(s)	152
BseMI	GCAATG	2 cut(s)	368, 960
BseMII	CTCAG	1 cut(s)	107
BseNI	ACTGG	2 cut(s)	313, 345
BseRI	GAGGAG	2 cut(s)	1056, 1059
BseXI	GCAGC	5 cut(s)	115, 414, 935, 943, 1020
Bsh1285I	CGRYCG	1 cut(s)	31
BshNI	GGYRCC	2 cut(s)	308, 461
BsiEI	CGRYCG	1 cut(s)	31
BsiHKAI	GWGCWC	1 cut(s)	1024
BsiHKCI	CYCGRG	2 cut(s)	60, 942
BsiSI	CCGG	3 cut(s)	61, 78, 821
BslFI	GGGAC	2 cut(s)	122, 772
BslI	CCNNNNNNNGG	1 cut(s)	152
BsmAI	GTCTC	1 cut(s)	66
BsmFI	GGGAC	2 cut(s)	122, 772
BsmI	GAATGC	1 cut(s)	681
BsoBI	CYCGRG	2 cut(s)	60, 942
Bsp1286I	GDGCHC	1 cut(s)	1024
Bsp13I	TCCGGA	2 cut(s)	77, 820
Bsp143I	GATC	6 cut(s)	55, 361, 652, 673, 718, 937
Bsp19I	CCATGG	1 cut(s)	13
BspACI	CCGC	3 cut(s)	27, 539, 1189
BspCNI	CTCAG	1 cut(s)	106
BspEI	TCCGGA	2 cut(s)	77, 820
BspLI	GGNNCC	6 cut(s)	82, 138, 310, 463, 634, 675
BspPI	GGATC	6 cut(s)	50, 356, 668, 681, 713, 932
BspT107I	GGYRCC	2 cut(s)	308, 461
BspTI	CTTAAG	1 cut(s)	668
BsrDI	GCAATG	2 cut(s)	368, 960
BsrI	ACTGG	2 cut(s)	313, 345
BssECI	CCNNGG	8 cut(s)	13, 59, 60, 465, 636, 725, 755, 941
BssMI	GATC	6 cut(s)	55, 361, 652, 673, 718, 937
BssT1I	CCWWGG	2 cut(s)	13, 725
Bst2UI	CCWGG	2 cut(s)	637, 756
Bst4CI	ACNGT	4 cut(s)	175, 230, 478, 1243
Bst6I	CTCTTC	1 cut(s)	696
BstAFI	CTTAAG	1 cut(s)	668
BstAPI	GCANNNNNTGC	4 cut(s)	24, 536, 956, 1151
BstC8I	GCNNGC	1 cut(s)	425
BstDEI	CTNAG	1 cut(s)	93
BstDSI	CCRYGG	2 cut(s)	13, 465
BstEII	GGTNACC	1 cut(s)	257
BstF5I	GGATG	2 cut(s)	952, 1191
BstH2I	RGCGCY	2 cut(s)	93, 1082
BstHHI	GCGC	2 cut(s)	92, 1081
BstKTI	GATC	6 cut(s)	58, 364, 655, 676, 721, 940
BstMAI	GTCTC	1 cut(s)	66
BstMBI	GATC	6 cut(s)	55, 361, 652, 673, 718, 937
BstMCI	CGRYCG	1 cut(s)	31
BstMWI	GCNNNNNNNGC	6 cut(s)	24, 536, 956, 962, 997, 1151
BstNI	CCWGG	2 cut(s)	637, 756
BstNSI	RCATGY	2 cut(s)	954, 1106
BstPI	GGTNACC	1 cut(s)	257
BstSCI	CCNGG	4 cut(s)	59, 60, 635, 754
BstSFI	CTRYAG	2 cut(s)	85, 1001
BstV1I	GCAGC	5 cut(s)	115, 414, 935, 943, 1020
BstX2I	RGATCY	2 cut(s)	673, 937
BstXI	CCANNNNNNTGG	2 cut(s)	278, 732
BstYI	RGATCY	2 cut(s)	673, 937
BsuI	GTATCC	1 cut(s)	762
BtgI	CCRYGG	2 cut(s)	13, 465
BtsCI	GGATG	2 cut(s)	952, 1191
BtsI	GCAGTG	1 cut(s)	537
BtsIMutI	CAGTG	3 cut(s)	171, 320, 537
Cac8I	GCNNGC	1 cut(s)	425
CaiI	CAGNNNCTG	1 cut(s)	234
CfoI	GCGC	2 cut(s)	92, 1081
Cfr13I	GGNCC	2 cut(s)	80, 136
Cfr9I	CCCGGG	1 cut(s)	60
Csp6I	GTAC	3 cut(s)	169, 462, 789
CviAII	CATG	4 cut(s)	14, 296, 951, 1103
CviQI	GTAC	3 cut(s)	169, 462, 789
DdeI	CTNAG	1 cut(s)	93
DpnI	GATC	6 cut(s)	57, 363, 654, 675, 720, 939
DpnII	GATC	6 cut(s)	55, 361, 652, 673, 718, 937
DraIII	CACNNNGTG	1 cut(s)	315
Eam1104I	CTCTTC	1 cut(s)	696
EarI	CTCTTC	1 cut(s)	696
Eco130I	CCWWGG	2 cut(s)	13, 725
Eco47I	GGWCC	2 cut(s)	80, 136
Eco47III	AGCGCT	2 cut(s)	91, 1080
Eco88I	CYCGRG	2 cut(s)	60, 942
Eco91I	GGTNACC	1 cut(s)	257
EcoO65I	GGTNACC	1 cut(s)	257
EcoRI	GAATTC	2 cut(s)	65, 1056
EcoRII	CCWGG	2 cut(s)	635, 754
EcoT14I	CCWWGG	2 cut(s)	13, 725
EcoT22I	ATGCAT	1 cut(s)	952
ErhI	CCWWGG	2 cut(s)	13, 725
FaeI	CATG	4 cut(s)	17, 299, 954, 1106
FaqI	GGGAC	2 cut(s)	122, 772
FatI	CATG	4 cut(s)	13, 295, 950, 1102
FauI	CCCGC	1 cut(s)	1182
FbaI	TGATCA	1 cut(s)	652
Fnu4HI	GCNGC	5 cut(s)	104, 428, 924, 957, 1034
FokI	GGATG	2 cut(s)	959, 1198
Fsp4HI	GCNGC	5 cut(s)	104, 428, 924, 957, 1034
FspBI	CTAG	1 cut(s)	1115
GlaI	GCGC	2 cut(s)	91, 1080
GluI	GCNGC	5 cut(s)	104, 428, 924, 957, 1034
GsuI	CTGGAG	2 cut(s)	651, 987
HaeII	RGCGCY	2 cut(s)	93, 1082
HapII	CCGG	3 cut(s)	61, 78, 821
HhaI	GCGC	2 cut(s)	92, 1081
Hin1II	CATG	4 cut(s)	17, 299, 954, 1106
Hin6I	GCGC	2 cut(s)	90, 1079
HinP1I	GCGC	2 cut(s)	90, 1079
HindIII	AAGCTT	1 cut(s)	390
HinfI	GANTC	5 cut(s)	74, 203, 521, 844, 971
HpaII	CCGG	3 cut(s)	61, 78, 821
HphI	GGTGA	5 cut(s)	530, 553, 707, 728, 794
Hpy166II	GTNNAC	1 cut(s)	171
Hpy188I	TCNGA	5 cut(s)	49, 71, 96, 687, 937
Hpy188III	TCNNGA	7 cut(s)	78, 200, 224, 525, 630, 821, 944
Hpy8I	GTNNAC	1 cut(s)	171
Hpy99I	CGWCG	1 cut(s)	53
HpyAV	CCTTC	3 cut(s)	156, 656, 704
HpyCH4III	ACNGT	4 cut(s)	175, 230, 478, 1243
HpyF10VI	GCNNNNNNNGC	6 cut(s)	24, 536, 956, 962, 997, 1151
HpyF3I	CTNAG	1 cut(s)	93
Hsp92II	CATG	4 cut(s)	17, 299, 954, 1106
HspAI	GCGC	2 cut(s)	90, 1079
Kpn2I	TCCGGA	2 cut(s)	77, 820
KpnI	GGTACC	1 cut(s)	465
Ksp22I	TGATCA	1 cut(s)	652
Kzo9I	GATC	6 cut(s)	55, 361, 652, 673, 718, 937
LmnI	GCTCC	3 cut(s)	632, 774, 1019
Lsp1109I	GCAGC	5 cut(s)	115, 414, 935, 943, 1020
LweI	GCATC	2 cut(s)	937, 1176
MaeI	CTAG	1 cut(s)	1115
MaeIII	GTNAC	3 cut(s)	191, 257, 581
MalI	GATC	6 cut(s)	57, 363, 654, 675, 720, 939
MboI	GATC	6 cut(s)	55, 361, 652, 673, 718, 937
MboII	GAAGA	3 cut(s)	713, 811, 1154
MflI	RGATCY	2 cut(s)	673, 937
MhlI	GDGCHC	1 cut(s)	1024
MluCI	AATT	7 cut(s)	65, 160, 302, 397, 441, 1056, 1203
MlyI	GAGTC	3 cut(s)	68, 197, 838
MmeI	TCCRAC	1 cut(s)	72
Mph1103I	ATGCAT	1 cut(s)	952
MroI	TCCGGA	2 cut(s)	77, 820
MseI	TTAA	6 cut(s)	240, 330, 410, 669, 915, 1073
MslI	CAYNNNNRTG	1 cut(s)	435
MspA1I	CMGCKG	2 cut(s)	841, 991
MspCI	CTTAAG	1 cut(s)	668
MspI	CCGG	3 cut(s)	61, 78, 821
MspR9I	CCNGG	4 cut(s)	61, 62, 637, 756
Mva1269I	GAATGC	1 cut(s)	681
MvaI	CCWGG	2 cut(s)	637, 756
MwoI	GCNNNNNNNGC	6 cut(s)	24, 536, 956, 962, 997, 1151
NciI	CCSGG	2 cut(s)	61, 62
NcoI	CCATGG	1 cut(s)	13
NdeII	GATC	6 cut(s)	55, 361, 652, 673, 718, 937
NlaIII	CATG	4 cut(s)	17, 299, 954, 1106
NlaIV	GGNNCC	6 cut(s)	82, 138, 310, 463, 634, 675
NmeAIII	GCCGAG	1 cut(s)	820
NmuCI	GTSAC	1 cut(s)	581
NsiI	ATGCAT	1 cut(s)	952
NspI	RCATGY	2 cut(s)	954, 1106
PciI	ACATGT	1 cut(s)	1102
PctI	GAATGC	1 cut(s)	681
PfeI	GAWTC	2 cut(s)	521, 971
PkrI	GCNGC	5 cut(s)	105, 429, 925, 958, 1035
PleI	GAGTC	3 cut(s)	68, 197, 838
PpsI	GAGTC	3 cut(s)	68, 197, 838
PscI	ACATGT	1 cut(s)	1102
PsiI	TTATAA	1 cut(s)	396
Psp6I	CCWGG	2 cut(s)	635, 754
PspEI	GGTNACC	1 cut(s)	257
PspGI	CCWGG	2 cut(s)	635, 754
PspN4I	GGNNCC	6 cut(s)	82, 138, 310, 463, 634, 675
PspPI	GGNCC	2 cut(s)	80, 136
PstNI	CAGNNNCTG	1 cut(s)	234
PsuI	RGATCY	2 cut(s)	673, 937
PvuII	CAGCTG	2 cut(s)	841, 991
RsaI	GTAC	3 cut(s)	170, 463, 790
RsaNI	GTAC	3 cut(s)	169, 462, 789
RseI	CAYNNNNRTG	1 cut(s)	435
SaqAI	TTAA	6 cut(s)	240, 330, 410, 669, 915, 1073
SatI	GCNGC	5 cut(s)	104, 428, 924, 957, 1034
Sau3AI	GATC	6 cut(s)	55, 361, 652, 673, 718, 937
Sau96I	GGNCC	2 cut(s)	80, 136
ScaI	AGTACT	1 cut(s)	790
SchI	GAGTC	3 cut(s)	68, 197, 838
ScrFI	CCNGG	4 cut(s)	61, 62, 637, 756
SduI	GDGCHC	1 cut(s)	1024
SfaNI	GCATC	2 cut(s)	937, 1176
SfcI	CTRYAG	2 cut(s)	85, 1001
SinI	GGWCC	2 cut(s)	80, 136
SmaI	CCCGGG	1 cut(s)	62
SmiMI	CAYNNNNRTG	1 cut(s)	435
SmlI	CTYRAG	3 cut(s)	668, 898, 1178
SmoI	CTYRAG	3 cut(s)	668, 898, 1178
Sse9I	AATT	7 cut(s)	65, 160, 302, 397, 441, 1056, 1203
SsiI	CCGC	3 cut(s)	27, 539, 1189
SspI	AATATT	1 cut(s)	932
SspMI	CTAG	1 cut(s)	1115
StyD4I	CCNGG	4 cut(s)	59, 60, 635, 754
StyI	CCWWGG	2 cut(s)	13, 725
TaaI	ACNGT	4 cut(s)	175, 230, 478, 1243
TaqI	TCGA	2 cut(s)	524, 888
TasI	AATT	7 cut(s)	65, 160, 302, 397, 441, 1056, 1203
TatI	WGTACW	2 cut(s)	168, 788
TfiI	GAWTC	2 cut(s)	521, 971
Tru1I	TTAA	6 cut(s)	240, 330, 410, 669, 915, 1073
Tru9I	TTAA	6 cut(s)	240, 330, 410, 669, 915, 1073
TscAI	CASTG	3 cut(s)	178, 320, 537
TseFI	GTSAC	1 cut(s)	581
TseI	GCWGC	5 cut(s)	103, 427, 923, 956, 1033
Tsp45I	GTSAC	1 cut(s)	581
TspDTI	ATGAA	1 cut(s)	714
TspMI	CCCGGG	1 cut(s)	60
TspRI	CASTG	3 cut(s)	178, 320, 537
Vha464I	CTTAAG	1 cut(s)	668
VpaK11BI	GGWCC	2 cut(s)	80, 136
XapI	RAATTY	2 cut(s)	65, 1056
XceI	RCATGY	2 cut(s)	954, 1106
XmaI	CCCGGG	1 cut(s)	60
XspI	CTAG	1 cut(s)	1115
ZrmI	AGTACT	1 cut(s)	790
Zsp2I	ATGCAT	1 cut(s)	952

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.