FvH4_4g16660

E3 ubiquitin-protein ligase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
Physical Location & Seq
Forward (+)
20531533 .. 20536017
4485 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g16660.t3

Sequence Viewer

Length: 1536 bp
ATGGCGTCAATGGTTGCCAAGGGGAGTAGTTGTACCACTCAACTCTCTCCCTCTATGACTGTTCAAGAAAAGGGTAGTAGAAACAAGAGGAAGTTCCGAGCTGATCCACCTTTAGCAGACCCGAATAAGATTTTGCCTTTACCTCAAACTGAATGTGCAGGTTACGAATTTTCAGCGGATAAGTTTGAAATAAGCCACCAGAATCATGGACAAACAAGTGTCTGTGACCTGTGTTTTGTGAATCAAGACCATTCTGATGGGTTGAAACTTGACCTTGGGTTGTCCAGTGCTGTTGGTTCATCTGAGGTTGGGCCAAGCCGGCCTAGAAGGGAATCAGAGGCAGATGAGTTTCAAGATGCTGATTGGAGTGATCTCACAGAAACCCAGCTTGAAGAACTTGTTCTGAGTAATTTGGACACAATCTTCAAGAGTGCAATTAAAAAGATTGTTGCTTGTGGTTACACTGAAGACGTTGCTACAAAGGCTGTTTTGCGGTCTGGTCTTTGTTATGGGTCTAAAGACACTGTGTCTAATATAGTGGATAATACTTTAGTTTTTCTTAGGAGTGGCCAAGAAATTGATCCTTCAAGGGAGCACTGTTTTGAAGATTTACAGCAGCTAGAGAAGTACATATTGGCGGAACTGGTTTGTGTTCTTCGTGAGATTAGGCCTTTCTTCAGCACTGGCGATGCAATGTGGTGCCTATTGATATGTGACATGAATGTCTCTCATGCTTGTGCAATGGATGGTGACCCCATAAGCAGTTTCCTCAATGATGGCACTTCAAATGGAAGTTCACCCATTTCAAATCAACCTCAGTCCAAACTAGAAGCCAAAAATTCAGAGTTGGGCCTTTTGAATGCTGGTAAACCGTTTTCAACAATGTCGGGTTCTCCTAGTTCACAGCCTGAGACATCTAAACTAAGAAATTCAGGTAACAATGGATTACTCTCAGAAAAAGAGGGCACAAACGGAACATCTCCATCTCCTGCTGTAGAGGAAAAGCTTGTGGGCGCTAGAAAGGTCCATTCTATTAGTACTAAAAGAGAATACATGCTTCGACAAAAGTCACTTCATTTGGAGAAAAATTACCGTGCATATGGATGTAAAGGGTCTTCAAGAGCAGGGAAGCTGAGTGGTTTGGGTGGTTTAATTTTGGATAAGAAGTTAAAATCAGTGTCAGACTCAACCGCTCTTAATTTAAAGAATGCATCTTTGAAAATAAGCAAGGCGATGGGAGTTGATTTGCCTAAAGACAATGGGAACCACATTCTTTCTTCCAATGCTGGGCCTTCTTCTCCTGGAGTTTTTAGCGTGGACGCTGAGAATGCTACTTCGGTTTTGCCTTTAAACAGTTTGTCATCTATCTTACCTTCTCTGCTGATACTGAGCTTTCTCTTTCGCTGCCAACAAAAAGCAGCACTACCCCAGTGCCTGTTAGCTTTAACTCAGATACCCCGAATTCTATTTTTGCTGGGATACCTTTTGATAAGTCCTTGGGGCAGTGGGTACCCAGGGACAAAAAAGATGAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

512

Amino Acids

55.18

Weight (kDa)

7.05

Isoelectric Point (pI)

47.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PIR2-like_helical PF20235 137 - 249 5.2e-31 PIR2-like, helical domain
zf-C3HC4_3 PF13920 831 - 878 5.4e-12 Zinc finger, C3HC4 type (RING finger)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 722
Acc36I ACCTGC 1 cut(s) 149
Acc65I GGTACC 1 cut(s) 1509
AccB1I GGYRCC 2 cut(s) 699, 1509
AccBSI CCGCTC 1 cut(s) 1193
AciI CCGC 4 cut(s) 176, 493, 638, 1191
AclWI GGATC 2 cut(s) 98, 575
AcoI YGGCCR 1 cut(s) 568
AcsI RAATTY 4 cut(s) 167, 838, 928, 1461
AcuI CTGAAG 2 cut(s) 486, 661
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 4 cut(s) 34, 629, 1039, 1511
AfiI CCNNNNNNNGG 1 cut(s) 1287
AhdI GACNNNNNGTC 1 cut(s) 526
AjnI CCWGG 2 cut(s) 1300, 1513
AjuI GAANNNNNNNTTGG 2 cut(s) 617, 649
AluBI AGCT 7 cut(s) 101, 388, 619, 1006, 1132, 1392, 1442
AluI AGCT 7 cut(s) 101, 388, 619, 1006, 1132, 1392, 1442
Alw21I GWGCWC 1 cut(s) 597
Alw26I GTCTC 2 cut(s) 730, 905
AlwI GGATC 2 cut(s) 98, 575
AlwNI CAGNNNCTG 1 cut(s) 1435
AoxI GGCC 6 cut(s) 311, 320, 568, 668, 850, 1289
ApeKI GCWGC 3 cut(s) 616, 1404, 1418
ApoI RAATTY 4 cut(s) 167, 838, 928, 1461
ArsI GACNNNNNNTTYG 2 cut(s) 218, 250
Asp700I GAANNNNTTC 1 cut(s) 399
Asp718I GGTACC 1 cut(s) 1509
AspLEI GCGC 1 cut(s) 1016
AspS9I GGNCC 4 cut(s) 311, 850, 1024, 1289
AsuHPI GGTGA 2 cut(s) 761, 789
AvaII GGWCC 1 cut(s) 1024
BaeGI GKGCMC 1 cut(s) 968
BalI TGGCCA 1 cut(s) 570
BanI GGYRCC 2 cut(s) 699, 1509
BarI GAAGNNNNNNTAC 2 cut(s) 1099, 1131
BbsI GAAGAC 2 cut(s) 474, 1107
Bbv12I GWGCWC 1 cut(s) 597
BbvI GCAGC 3 cut(s) 628, 1391, 1430
BccI CCATC 5 cut(s) 251, 740, 770, 991, 1228
BciT130I CCWGG 2 cut(s) 1302, 1515
BciVI GTATCC 1 cut(s) 1472
BcoDI GTCTC 2 cut(s) 730, 905
BfaI CTAG 5 cut(s) 324, 620, 827, 897, 1017
BfmI CTRYAG 1 cut(s) 993
BfoI RGCGCY 1 cut(s) 1017
BfuAI ACCTGC 1 cut(s) 149
BfuI GTATCC 1 cut(s) 1472
BglI GCCNNNNNGGC 1 cut(s) 319
BisI GCNGC 3 cut(s) 617, 1405, 1419
BlsI GCNGC 3 cut(s) 618, 1406, 1420
BmcAI AGTACT 1 cut(s) 1039
Bme1390I CCNGG 2 cut(s) 1302, 1515
Bme18I GGWCC 1 cut(s) 1024
BmeRI GACNNNNNGTC 1 cut(s) 526
BmgT120I GGNCC 4 cut(s) 311, 850, 1024, 1289
BmiI GGNNCC 3 cut(s) 701, 1265, 1511
BmrFI CCNGG 2 cut(s) 1302, 1515
BmrI ACTGGG 1 cut(s) 1423
BmsI GCATC 3 cut(s) 346, 679, 1220
BmuI ACTGGG 1 cut(s) 1423
BoxI GACNNNNGTC 1 cut(s) 1066
BpiI GAAGAC 2 cut(s) 474, 1107
BpmI CTGGAG 1 cut(s) 1323
BsaHI GRCGYC 1 cut(s) 5
BsaJI CCNNGG 5 cut(s) 18, 274, 1496, 1513, 1514
BsaXI ACNNNNNCTCC 2 cut(s) 16, 46
Bsc4I CCNNNNNNNGG 1 cut(s) 1287
Bse118I RCCGGY 1 cut(s) 318
Bse1I ACTGG 4 cut(s) 285, 648, 688, 1429
Bse3DI GCAATG 2 cut(s) 699, 747
BseBI CCWGG 2 cut(s) 1302, 1515
BseDI CCNNGG 5 cut(s) 18, 274, 1496, 1513, 1514
BseGI GGATG 2 cut(s) 751, 1109
BseLI CCNNNNNNNGG 1 cut(s) 1287
BseMI GCAATG 2 cut(s) 699, 747
BseMII CTCAG 9 cut(s) 294, 395, 830, 900, 966, 1124, 1314, 1379, 1463
BseNI ACTGG 4 cut(s) 285, 648, 688, 1429
BseSI GKGCMC 1 cut(s) 968
BseXI GCAGC 3 cut(s) 628, 1391, 1430
BseYI CCCAGC 3 cut(s) 384, 1286, 1474
BsgI GTGCAG 1 cut(s) 177
BshFI GGCC 6 cut(s) 313, 322, 570, 670, 852, 1291
BshNI GGYRCC 2 cut(s) 699, 1509
BsiHKAI GWGCWC 1 cut(s) 597
BsiSI CCGG 1 cut(s) 319
BslFI GGGAC 1 cut(s) 1531
BslI CCNNNNNNNGG 1 cut(s) 1287
BsmAI GTCTC 2 cut(s) 730, 905
BsmFI GGGAC 1 cut(s) 1531
BsmI GAATGC 3 cut(s) 865, 1213, 1333
BsnI GGCC 6 cut(s) 313, 322, 570, 670, 852, 1291
Bsp1286I GDGCHC 2 cut(s) 597, 968
Bsp143I GATC 3 cut(s) 103, 370, 580
BspACI CCGC 4 cut(s) 176, 493, 638, 1191
BspANI GGCC 6 cut(s) 313, 322, 570, 670, 852, 1291
BspCNI CTCAG 9 cut(s) 295, 396, 829, 901, 965, 1125, 1315, 1380, 1462
BspLI GGNNCC 3 cut(s) 701, 1265, 1511
BspMI ACCTGC 1 cut(s) 149
BspPI GGATC 2 cut(s) 98, 575
BspT107I GGYRCC 2 cut(s) 699, 1509
BsrBI CCGCTC 1 cut(s) 1193
BsrDI GCAATG 2 cut(s) 699, 747
BsrFI RCCGGY 1 cut(s) 318
BsrI ACTGG 4 cut(s) 285, 648, 688, 1429
BssAI RCCGGY 1 cut(s) 318
BssECI CCNNGG 5 cut(s) 18, 274, 1496, 1513, 1514
BssMI GATC 3 cut(s) 103, 370, 580
BssNI GRCGYC 1 cut(s) 5
BssT1I CCWWGG 3 cut(s) 18, 274, 1496
Bst2UI CCWGG 2 cut(s) 1302, 1515
Bst4CI ACNGT 6 cut(s) 61, 526, 599, 873, 1094, 1355
BstACI GRCGYC 1 cut(s) 5
BstC8I GCNNGC 1 cut(s) 320
BstEII GGTNACC 1 cut(s) 749
BstF5I GGATG 2 cut(s) 751, 1109
BstH2I RGCGCY 1 cut(s) 1017
BstHHI GCGC 1 cut(s) 1016
BstKTI GATC 3 cut(s) 106, 373, 583
BstMAI GTCTC 2 cut(s) 730, 905
BstMBI GATC 3 cut(s) 103, 370, 580
BstMWI GCNNNNNNNGC 3 cut(s) 319, 482, 1328
BstNI CCWGG 2 cut(s) 1302, 1515
BstNSI RCATGY 1 cut(s) 1057
BstPAI GACNNNNGTC 1 cut(s) 1066
BstPI GGTNACC 1 cut(s) 749
BstSCI CCNGG 2 cut(s) 1300, 1513
BstSFI CTRYAG 1 cut(s) 993
BstSLI GKGCMC 1 cut(s) 968
BstV1I GCAGC 3 cut(s) 628, 1391, 1430
BstV2I GAAGAC 2 cut(s) 474, 1107
BstXI CCANNNNNNTGG 2 cut(s) 206, 257
BsuI GTATCC 1 cut(s) 1472
BsuRI GGCC 6 cut(s) 313, 322, 570, 670, 852, 1291
BtgZI GCGATG 2 cut(s) 702, 1247
BtsCI GGATG 2 cut(s) 751, 1109
BtsI GCAGTG 1 cut(s) 1510
BtsIMutI CAGTG 8 cut(s) 292, 462, 522, 595, 681, 1182, 1436, 1510
BveI ACCTGC 1 cut(s) 149
Cac8I GCNNGC 1 cut(s) 320
CaiI CAGNNNCTG 1 cut(s) 1435
CfoI GCGC 1 cut(s) 1016
Cfr10I RCCGGY 1 cut(s) 318
Cfr13I GGNCC 4 cut(s) 311, 850, 1024, 1289
CseI GACGC 1 cut(s) 1328
Csp6I GTAC 4 cut(s) 33, 628, 1038, 1510
CviAII CATG 4 cut(s) 206, 718, 731, 1054
CviQI GTAC 4 cut(s) 33, 628, 1038, 1510
DpnI GATC 3 cut(s) 105, 372, 582
DpnII GATC 3 cut(s) 103, 370, 580
DraI TTTAAA 2 cut(s) 1203, 1350
DrdI GACNNNNNNGTC 1 cut(s) 722
DriI GACNNNNNGTC 1 cut(s) 526
DseDI GACNNNNNNGTC 1 cut(s) 722
EaeI YGGCCR 1 cut(s) 568
Eam1105I GACNNNNNGTC 1 cut(s) 526
EciI GGCGGA 1 cut(s) 653
Eco130I CCWWGG 3 cut(s) 18, 274, 1496
Eco147I AGGCCT 1 cut(s) 670
Eco47I GGWCC 1 cut(s) 1024
Eco57I CTGAAG 2 cut(s) 486, 661
Eco91I GGTNACC 1 cut(s) 749
EcoO65I GGTNACC 1 cut(s) 749
EcoRI GAATTC 1 cut(s) 1461
EcoRII CCWGG 2 cut(s) 1300, 1513
EcoT14I CCWWGG 3 cut(s) 18, 274, 1496
EcoT22I ATGCAT 1 cut(s) 1213
ErhI CCWWGG 3 cut(s) 18, 274, 1496
FaeI CATG 4 cut(s) 209, 721, 734, 1057
FaqI GGGAC 1 cut(s) 1531
FatI CATG 4 cut(s) 205, 717, 730, 1053
FauNDI CATATG 1 cut(s) 1099
Fnu4HI GCNGC 3 cut(s) 617, 1405, 1419
FokI GGATG 2 cut(s) 758, 1116
Fsp4HI GCNGC 3 cut(s) 617, 1405, 1419
FspBI CTAG 5 cut(s) 324, 620, 827, 897, 1017
GlaI GCGC 1 cut(s) 1015
GluI GCNGC 3 cut(s) 617, 1405, 1419
GsaI CCCAGC 3 cut(s) 388, 1290, 1478
GsuI CTGGAG 1 cut(s) 1323
HaeII RGCGCY 1 cut(s) 1017
HaeIII GGCC 6 cut(s) 313, 322, 570, 670, 852, 1291
HapII CCGG 1 cut(s) 319
HgaI GACGC 1 cut(s) 1328
HhaI GCGC 1 cut(s) 1016
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 4 cut(s) 209, 721, 734, 1057
Hin6I GCGC 1 cut(s) 1014
HinP1I GCGC 1 cut(s) 1014
HindIII AAGCTT 1 cut(s) 1004
HinfI GANTC 4 cut(s) 202, 241, 332, 1184
HpaII CCGG 1 cut(s) 319
HphI GGTGA 2 cut(s) 761, 789
Hpy166II GTNNAC 4 cut(s) 797, 869, 902, 1318
Hpy188I TCNGA 9 cut(s) 98, 256, 304, 337, 405, 844, 955, 1183, 1452
Hpy188III TCNNGA 6 cut(s) 65, 245, 353, 427, 659, 1119
Hpy8I GTNNAC 4 cut(s) 797, 869, 902, 1318
HpyAV CCTTC 4 cut(s) 321, 594, 1302, 1383
HpyCH4III ACNGT 6 cut(s) 61, 526, 599, 873, 1094, 1355
HpyCH4IV ACGT 1 cut(s) 471
HpyCH4V TGCA 6 cut(s) 158, 434, 692, 740, 1097, 1211
HpyF10VI GCNNNNNNNGC 3 cut(s) 319, 482, 1328
HpySE526I ACGT 1 cut(s) 471
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 4 cut(s) 209, 721, 734, 1057
HspAI GCGC 1 cut(s) 1014
KpnI GGTACC 1 cut(s) 1513
KroI GCCGGC 1 cut(s) 318
KroNI GCCGGC 1 cut(s) 320
Kzo9I GATC 3 cut(s) 103, 370, 580
LmnI GCTCC 1 cut(s) 592
Lsp1109I GCAGC 3 cut(s) 628, 1391, 1430
LweI GCATC 3 cut(s) 346, 679, 1220
MaeI CTAG 5 cut(s) 324, 620, 827, 897, 1017
MaeII ACGT 1 cut(s) 471
MaeIII GTNAC 7 cut(s) 161, 224, 458, 713, 749, 935, 1068
MalI GATC 3 cut(s) 105, 372, 582
MbiI CCGCTC 1 cut(s) 1193
MboI GATC 3 cut(s) 103, 370, 580
MboII GAAGA 9 cut(s) 404, 415, 479, 617, 647, 667, 1107, 1269, 1287
MhlI GDGCHC 2 cut(s) 597, 968
MlsI TGGCCA 1 cut(s) 570
MluNI TGGCCA 1 cut(s) 570
MlyI GAGTC 1 cut(s) 1178
MnlI CCTC 9 cut(s) 61, 81, 153, 298, 331, 779, 825, 955, 991
Mox20I TGGCCA 1 cut(s) 570
Mph1103I ATGCAT 1 cut(s) 1213
MroNI GCCGGC 1 cut(s) 318
MroXI GAANNNNTTC 1 cut(s) 399
MscI TGGCCA 1 cut(s) 570
MseI TTAA 7 cut(s) 438, 1151, 1169, 1197, 1202, 1349, 1445
MslI CAYNNNNRTG 3 cut(s) 255, 735, 1102
Msp20I TGGCCA 1 cut(s) 570
MspA1I CMGCKG 1 cut(s) 176
MspI CCGG 1 cut(s) 319
MspR9I CCNGG 2 cut(s) 1302, 1515
Mva1269I GAATGC 3 cut(s) 865, 1213, 1333
MvaI CCWGG 2 cut(s) 1302, 1515
MwoI GCNNNNNNNGC 3 cut(s) 319, 482, 1328
NaeI GCCGGC 1 cut(s) 320
NdeI CATATG 1 cut(s) 1099
NdeII GATC 3 cut(s) 103, 370, 580
NgoMIV GCCGGC 1 cut(s) 318
NlaIII CATG 4 cut(s) 209, 721, 734, 1057
NlaIV GGNNCC 3 cut(s) 701, 1265, 1511
NmuCI GTSAC 4 cut(s) 224, 713, 749, 1068
NsiI ATGCAT 1 cut(s) 1213
NspI RCATGY 1 cut(s) 1057
PasI CCCWGGG 1 cut(s) 1514
PceI AGGCCT 1 cut(s) 670
PctI GAATGC 3 cut(s) 865, 1213, 1333
PdiI GCCGGC 1 cut(s) 320
PdmI GAANNNNTTC 1 cut(s) 399
PfeI GAWTC 3 cut(s) 202, 241, 332
PfoI TCCNGGA 1 cut(s) 1300
PkrI GCNGC 3 cut(s) 618, 1406, 1420
PleI GAGTC 1 cut(s) 1178
PpsI GAGTC 1 cut(s) 1178
PshAI GACNNNNGTC 1 cut(s) 1066
Psp6I CCWGG 2 cut(s) 1300, 1513
PspEI GGTNACC 1 cut(s) 749
PspFI CCCAGC 3 cut(s) 384, 1286, 1474
PspGI CCWGG 2 cut(s) 1300, 1513
PspN4I GGNNCC 3 cut(s) 701, 1265, 1511
PspPI GGNCC 4 cut(s) 311, 850, 1024, 1289
PstNI CAGNNNCTG 1 cut(s) 1435
RsaI GTAC 4 cut(s) 34, 629, 1039, 1511
RsaNI GTAC 4 cut(s) 33, 628, 1038, 1510
RseI CAYNNNNRTG 3 cut(s) 255, 735, 1102
SaqAI TTAA 7 cut(s) 438, 1151, 1169, 1197, 1202, 1349, 1445
SatI GCNGC 3 cut(s) 617, 1405, 1419
Sau3AI GATC 3 cut(s) 103, 370, 580
Sau96I GGNCC 4 cut(s) 311, 850, 1024, 1289
ScaI AGTACT 1 cut(s) 1039
SchI GAGTC 1 cut(s) 1178
ScrFI CCNGG 2 cut(s) 1302, 1515
SduI GDGCHC 2 cut(s) 597, 968
SfaNI GCATC 3 cut(s) 346, 679, 1220
SfcI CTRYAG 1 cut(s) 993
SfiI GGCCNNNNNGGCC 1 cut(s) 319
SinI GGWCC 1 cut(s) 1024
SmiMI CAYNNNNRTG 3 cut(s) 255, 735, 1102
SseBI AGGCCT 1 cut(s) 670
SsiI CCGC 4 cut(s) 176, 493, 638, 1191
SspMI CTAG 5 cut(s) 324, 620, 827, 897, 1017
StuI AGGCCT 1 cut(s) 670
StyD4I CCNGG 2 cut(s) 1300, 1513
StyI CCWWGG 3 cut(s) 18, 274, 1496
TaaI ACNGT 6 cut(s) 61, 526, 599, 873, 1094, 1355
TaiI ACGT 1 cut(s) 474
TaqI TCGA 1 cut(s) 1060
TatI WGTACW 2 cut(s) 627, 1037
TfiI GAWTC 3 cut(s) 202, 241, 332
Tru1I TTAA 7 cut(s) 438, 1151, 1169, 1197, 1202, 1349, 1445
Tru9I TTAA 7 cut(s) 438, 1151, 1169, 1197, 1202, 1349, 1445
TscAI CASTG 8 cut(s) 292, 469, 529, 602, 688, 1182, 1436, 1510
TseFI GTSAC 4 cut(s) 224, 713, 749, 1068
TseI GCWGC 3 cut(s) 616, 1404, 1418
Tsp45I GTSAC 4 cut(s) 224, 713, 749, 1068
TspDTI ATGAA 3 cut(s) 288, 734, 1064
TspGWI ACGGA 1 cut(s) 987
TspRI CASTG 8 cut(s) 292, 469, 529, 602, 688, 1182, 1436, 1510
VpaK11BI GGWCC 1 cut(s) 1024
XapI RAATTY 4 cut(s) 167, 838, 928, 1461
XceI RCATGY 1 cut(s) 1057
XcmI CCANNNNNNNNNTGG 1 cut(s) 203
XmnI GAANNNNTTC 1 cut(s) 399
XspI CTAG 5 cut(s) 324, 620, 827, 897, 1017
ZrmI AGTACT 1 cut(s) 1039
Zsp2I ATGCAT 1 cut(s) 1213
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.