E3 ubiquitin-protein ligase
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_4g16660 FvH4_4g16660 FvH4_4g16660 FvH4_4g16660 |
| malus_domestica | MD13G1177600.v1.1 MD16G1179600.v1.1 |
| prunus_persica | Prupe.1G146600_v2.0.a1 Prupe.1G146600_v2.0.a1 Prupe.1G146600_v2.0.a1 Prupe.1G146600_v2.0.a1 |
| pyrus_communis | pycom13g15320 |
| rosa_chinensis | RchiOBHm_Chr4g0420121 |
| rosa_laevigata | RLG00000007787 |
| rosa_multiflora | Rmu_sc0015433.1_g000001 Rmu_sc0023895.1_g000001 |
| rosa_roxburghii | Rroxscaffold_5G00362830 |
| rosa_rugosa | Rorug04G0162300 Rorug04G0162400 |
| rosa_samantha | Rh4AG223200 Rh4BG225600 Rh4CG236400 Rh4DG222000 |
| rosa_wichuraiana | Rw4G019210 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 722 |
| Acc36I | ACCTGC | 1 cut(s) | 149 |
| Acc65I | GGTACC | 1 cut(s) | 1509 |
| AccB1I | GGYRCC | 2 cut(s) | 699, 1509 |
| AccBSI | CCGCTC | 1 cut(s) | 1193 |
| AciI | CCGC | 4 cut(s) | 176, 493, 638, 1191 |
| AclWI | GGATC | 2 cut(s) | 98, 575 |
| AcoI | YGGCCR | 1 cut(s) | 568 |
| AcsI | RAATTY | 4 cut(s) | 167, 838, 928, 1461 |
| AcuI | CTGAAG | 2 cut(s) | 486, 661 |
| AcyI | GRCGYC | 1 cut(s) | 5 |
| AfaI | GTAC | 4 cut(s) | 34, 629, 1039, 1511 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 1287 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 526 |
| AjnI | CCWGG | 2 cut(s) | 1300, 1513 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 617, 649 |
| AluBI | AGCT | 7 cut(s) | 101, 388, 619, 1006, 1132, 1392, 1442 |
| AluI | AGCT | 7 cut(s) | 101, 388, 619, 1006, 1132, 1392, 1442 |
| Alw21I | GWGCWC | 1 cut(s) | 597 |
| Alw26I | GTCTC | 2 cut(s) | 730, 905 |
| AlwI | GGATC | 2 cut(s) | 98, 575 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1435 |
| AoxI | GGCC | 6 cut(s) | 311, 320, 568, 668, 850, 1289 |
| ApeKI | GCWGC | 3 cut(s) | 616, 1404, 1418 |
| ApoI | RAATTY | 4 cut(s) | 167, 838, 928, 1461 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 218, 250 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 399 |
| Asp718I | GGTACC | 1 cut(s) | 1509 |
| AspLEI | GCGC | 1 cut(s) | 1016 |
| AspS9I | GGNCC | 4 cut(s) | 311, 850, 1024, 1289 |
| AsuHPI | GGTGA | 2 cut(s) | 761, 789 |
| AvaII | GGWCC | 1 cut(s) | 1024 |
| BaeGI | GKGCMC | 1 cut(s) | 968 |
| BalI | TGGCCA | 1 cut(s) | 570 |
| BanI | GGYRCC | 2 cut(s) | 699, 1509 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1099, 1131 |
| BbsI | GAAGAC | 2 cut(s) | 474, 1107 |
| Bbv12I | GWGCWC | 1 cut(s) | 597 |
| BbvI | GCAGC | 3 cut(s) | 628, 1391, 1430 |
| BccI | CCATC | 5 cut(s) | 251, 740, 770, 991, 1228 |
| BciT130I | CCWGG | 2 cut(s) | 1302, 1515 |
| BciVI | GTATCC | 1 cut(s) | 1472 |
| BcoDI | GTCTC | 2 cut(s) | 730, 905 |
| BfaI | CTAG | 5 cut(s) | 324, 620, 827, 897, 1017 |
| BfmI | CTRYAG | 1 cut(s) | 993 |
| BfoI | RGCGCY | 1 cut(s) | 1017 |
| BfuAI | ACCTGC | 1 cut(s) | 149 |
| BfuI | GTATCC | 1 cut(s) | 1472 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 319 |
| BisI | GCNGC | 3 cut(s) | 617, 1405, 1419 |
| BlsI | GCNGC | 3 cut(s) | 618, 1406, 1420 |
| BmcAI | AGTACT | 1 cut(s) | 1039 |
| Bme1390I | CCNGG | 2 cut(s) | 1302, 1515 |
| Bme18I | GGWCC | 1 cut(s) | 1024 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 526 |
| BmgT120I | GGNCC | 4 cut(s) | 311, 850, 1024, 1289 |
| BmiI | GGNNCC | 3 cut(s) | 701, 1265, 1511 |
| BmrFI | CCNGG | 2 cut(s) | 1302, 1515 |
| BmrI | ACTGGG | 1 cut(s) | 1423 |
| BmsI | GCATC | 3 cut(s) | 346, 679, 1220 |
| BmuI | ACTGGG | 1 cut(s) | 1423 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1066 |
| BpiI | GAAGAC | 2 cut(s) | 474, 1107 |
| BpmI | CTGGAG | 1 cut(s) | 1323 |
| BsaHI | GRCGYC | 1 cut(s) | 5 |
| BsaJI | CCNNGG | 5 cut(s) | 18, 274, 1496, 1513, 1514 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 16, 46 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 1287 |
| Bse118I | RCCGGY | 1 cut(s) | 318 |
| Bse1I | ACTGG | 4 cut(s) | 285, 648, 688, 1429 |
| Bse3DI | GCAATG | 2 cut(s) | 699, 747 |
| BseBI | CCWGG | 2 cut(s) | 1302, 1515 |
| BseDI | CCNNGG | 5 cut(s) | 18, 274, 1496, 1513, 1514 |
| BseGI | GGATG | 2 cut(s) | 751, 1109 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 1287 |
| BseMI | GCAATG | 2 cut(s) | 699, 747 |
| BseMII | CTCAG | 9 cut(s) | 294, 395, 830, 900, 966, 1124, 1314, 1379, 1463 |
| BseNI | ACTGG | 4 cut(s) | 285, 648, 688, 1429 |
| BseSI | GKGCMC | 1 cut(s) | 968 |
| BseXI | GCAGC | 3 cut(s) | 628, 1391, 1430 |
| BseYI | CCCAGC | 3 cut(s) | 384, 1286, 1474 |
| BsgI | GTGCAG | 1 cut(s) | 177 |
| BshFI | GGCC | 6 cut(s) | 313, 322, 570, 670, 852, 1291 |
| BshNI | GGYRCC | 2 cut(s) | 699, 1509 |
| BsiHKAI | GWGCWC | 1 cut(s) | 597 |
| BsiSI | CCGG | 1 cut(s) | 319 |
| BslFI | GGGAC | 1 cut(s) | 1531 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 1287 |
| BsmAI | GTCTC | 2 cut(s) | 730, 905 |
| BsmFI | GGGAC | 1 cut(s) | 1531 |
| BsmI | GAATGC | 3 cut(s) | 865, 1213, 1333 |
| BsnI | GGCC | 6 cut(s) | 313, 322, 570, 670, 852, 1291 |
| Bsp1286I | GDGCHC | 2 cut(s) | 597, 968 |
| Bsp143I | GATC | 3 cut(s) | 103, 370, 580 |
| BspACI | CCGC | 4 cut(s) | 176, 493, 638, 1191 |
| BspANI | GGCC | 6 cut(s) | 313, 322, 570, 670, 852, 1291 |
| BspCNI | CTCAG | 9 cut(s) | 295, 396, 829, 901, 965, 1125, 1315, 1380, 1462 |
| BspLI | GGNNCC | 3 cut(s) | 701, 1265, 1511 |
| BspMI | ACCTGC | 1 cut(s) | 149 |
| BspPI | GGATC | 2 cut(s) | 98, 575 |
| BspT107I | GGYRCC | 2 cut(s) | 699, 1509 |
| BsrBI | CCGCTC | 1 cut(s) | 1193 |
| BsrDI | GCAATG | 2 cut(s) | 699, 747 |
| BsrFI | RCCGGY | 1 cut(s) | 318 |
| BsrI | ACTGG | 4 cut(s) | 285, 648, 688, 1429 |
| BssAI | RCCGGY | 1 cut(s) | 318 |
| BssECI | CCNNGG | 5 cut(s) | 18, 274, 1496, 1513, 1514 |
| BssMI | GATC | 3 cut(s) | 103, 370, 580 |
| BssNI | GRCGYC | 1 cut(s) | 5 |
| BssT1I | CCWWGG | 3 cut(s) | 18, 274, 1496 |
| Bst2UI | CCWGG | 2 cut(s) | 1302, 1515 |
| Bst4CI | ACNGT | 6 cut(s) | 61, 526, 599, 873, 1094, 1355 |
| BstACI | GRCGYC | 1 cut(s) | 5 |
| BstC8I | GCNNGC | 1 cut(s) | 320 |
| BstEII | GGTNACC | 1 cut(s) | 749 |
| BstF5I | GGATG | 2 cut(s) | 751, 1109 |
| BstH2I | RGCGCY | 1 cut(s) | 1017 |
| BstHHI | GCGC | 1 cut(s) | 1016 |
| BstKTI | GATC | 3 cut(s) | 106, 373, 583 |
| BstMAI | GTCTC | 2 cut(s) | 730, 905 |
| BstMBI | GATC | 3 cut(s) | 103, 370, 580 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 319, 482, 1328 |
| BstNI | CCWGG | 2 cut(s) | 1302, 1515 |
| BstNSI | RCATGY | 1 cut(s) | 1057 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1066 |
| BstPI | GGTNACC | 1 cut(s) | 749 |
| BstSCI | CCNGG | 2 cut(s) | 1300, 1513 |
| BstSFI | CTRYAG | 1 cut(s) | 993 |
| BstSLI | GKGCMC | 1 cut(s) | 968 |
| BstV1I | GCAGC | 3 cut(s) | 628, 1391, 1430 |
| BstV2I | GAAGAC | 2 cut(s) | 474, 1107 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 206, 257 |
| BsuI | GTATCC | 1 cut(s) | 1472 |
| BsuRI | GGCC | 6 cut(s) | 313, 322, 570, 670, 852, 1291 |
| BtgZI | GCGATG | 2 cut(s) | 702, 1247 |
| BtsCI | GGATG | 2 cut(s) | 751, 1109 |
| BtsI | GCAGTG | 1 cut(s) | 1510 |
| BtsIMutI | CAGTG | 8 cut(s) | 292, 462, 522, 595, 681, 1182, 1436, 1510 |
| BveI | ACCTGC | 1 cut(s) | 149 |
| Cac8I | GCNNGC | 1 cut(s) | 320 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1435 |
| CfoI | GCGC | 1 cut(s) | 1016 |
| Cfr10I | RCCGGY | 1 cut(s) | 318 |
| Cfr13I | GGNCC | 4 cut(s) | 311, 850, 1024, 1289 |
| CseI | GACGC | 1 cut(s) | 1328 |
| Csp6I | GTAC | 4 cut(s) | 33, 628, 1038, 1510 |
| CviAII | CATG | 4 cut(s) | 206, 718, 731, 1054 |
| CviQI | GTAC | 4 cut(s) | 33, 628, 1038, 1510 |
| DpnI | GATC | 3 cut(s) | 105, 372, 582 |
| DpnII | GATC | 3 cut(s) | 103, 370, 580 |
| DraI | TTTAAA | 2 cut(s) | 1203, 1350 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 722 |
| DriI | GACNNNNNGTC | 1 cut(s) | 526 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 722 |
| EaeI | YGGCCR | 1 cut(s) | 568 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 526 |
| EciI | GGCGGA | 1 cut(s) | 653 |
| Eco130I | CCWWGG | 3 cut(s) | 18, 274, 1496 |
| Eco147I | AGGCCT | 1 cut(s) | 670 |
| Eco47I | GGWCC | 1 cut(s) | 1024 |
| Eco57I | CTGAAG | 2 cut(s) | 486, 661 |
| Eco91I | GGTNACC | 1 cut(s) | 749 |
| EcoO65I | GGTNACC | 1 cut(s) | 749 |
| EcoRI | GAATTC | 1 cut(s) | 1461 |
| EcoRII | CCWGG | 2 cut(s) | 1300, 1513 |
| EcoT14I | CCWWGG | 3 cut(s) | 18, 274, 1496 |
| EcoT22I | ATGCAT | 1 cut(s) | 1213 |
| ErhI | CCWWGG | 3 cut(s) | 18, 274, 1496 |
| FaeI | CATG | 4 cut(s) | 209, 721, 734, 1057 |
| FaqI | GGGAC | 1 cut(s) | 1531 |
| FatI | CATG | 4 cut(s) | 205, 717, 730, 1053 |
| FauNDI | CATATG | 1 cut(s) | 1099 |
| Fnu4HI | GCNGC | 3 cut(s) | 617, 1405, 1419 |
| FokI | GGATG | 2 cut(s) | 758, 1116 |
| Fsp4HI | GCNGC | 3 cut(s) | 617, 1405, 1419 |
| FspBI | CTAG | 5 cut(s) | 324, 620, 827, 897, 1017 |
| GlaI | GCGC | 1 cut(s) | 1015 |
| GluI | GCNGC | 3 cut(s) | 617, 1405, 1419 |
| GsaI | CCCAGC | 3 cut(s) | 388, 1290, 1478 |
| GsuI | CTGGAG | 1 cut(s) | 1323 |
| HaeII | RGCGCY | 1 cut(s) | 1017 |
| HaeIII | GGCC | 6 cut(s) | 313, 322, 570, 670, 852, 1291 |
| HapII | CCGG | 1 cut(s) | 319 |
| HgaI | GACGC | 1 cut(s) | 1328 |
| HhaI | GCGC | 1 cut(s) | 1016 |
| Hin1I | GRCGYC | 1 cut(s) | 5 |
| Hin1II | CATG | 4 cut(s) | 209, 721, 734, 1057 |
| Hin6I | GCGC | 1 cut(s) | 1014 |
| HinP1I | GCGC | 1 cut(s) | 1014 |
| HindIII | AAGCTT | 1 cut(s) | 1004 |
| HinfI | GANTC | 4 cut(s) | 202, 241, 332, 1184 |
| HpaII | CCGG | 1 cut(s) | 319 |
| HphI | GGTGA | 2 cut(s) | 761, 789 |
| Hpy166II | GTNNAC | 4 cut(s) | 797, 869, 902, 1318 |
| Hpy188I | TCNGA | 9 cut(s) | 98, 256, 304, 337, 405, 844, 955, 1183, 1452 |
| Hpy188III | TCNNGA | 6 cut(s) | 65, 245, 353, 427, 659, 1119 |
| Hpy8I | GTNNAC | 4 cut(s) | 797, 869, 902, 1318 |
| HpyAV | CCTTC | 4 cut(s) | 321, 594, 1302, 1383 |
| HpyCH4III | ACNGT | 6 cut(s) | 61, 526, 599, 873, 1094, 1355 |
| HpyCH4IV | ACGT | 1 cut(s) | 471 |
| HpyCH4V | TGCA | 6 cut(s) | 158, 434, 692, 740, 1097, 1211 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 319, 482, 1328 |
| HpySE526I | ACGT | 1 cut(s) | 471 |
| Hsp92I | GRCGYC | 1 cut(s) | 5 |
| Hsp92II | CATG | 4 cut(s) | 209, 721, 734, 1057 |
| HspAI | GCGC | 1 cut(s) | 1014 |
| KpnI | GGTACC | 1 cut(s) | 1513 |
| KroI | GCCGGC | 1 cut(s) | 318 |
| KroNI | GCCGGC | 1 cut(s) | 320 |
| Kzo9I | GATC | 3 cut(s) | 103, 370, 580 |
| LmnI | GCTCC | 1 cut(s) | 592 |
| Lsp1109I | GCAGC | 3 cut(s) | 628, 1391, 1430 |
| LweI | GCATC | 3 cut(s) | 346, 679, 1220 |
| MaeI | CTAG | 5 cut(s) | 324, 620, 827, 897, 1017 |
| MaeII | ACGT | 1 cut(s) | 471 |
| MaeIII | GTNAC | 7 cut(s) | 161, 224, 458, 713, 749, 935, 1068 |
| MalI | GATC | 3 cut(s) | 105, 372, 582 |
| MbiI | CCGCTC | 1 cut(s) | 1193 |
| MboI | GATC | 3 cut(s) | 103, 370, 580 |
| MboII | GAAGA | 9 cut(s) | 404, 415, 479, 617, 647, 667, 1107, 1269, 1287 |
| MhlI | GDGCHC | 2 cut(s) | 597, 968 |
| MlsI | TGGCCA | 1 cut(s) | 570 |
| MluNI | TGGCCA | 1 cut(s) | 570 |
| MlyI | GAGTC | 1 cut(s) | 1178 |
| MnlI | CCTC | 9 cut(s) | 61, 81, 153, 298, 331, 779, 825, 955, 991 |
| Mox20I | TGGCCA | 1 cut(s) | 570 |
| Mph1103I | ATGCAT | 1 cut(s) | 1213 |
| MroNI | GCCGGC | 1 cut(s) | 318 |
| MroXI | GAANNNNTTC | 1 cut(s) | 399 |
| MscI | TGGCCA | 1 cut(s) | 570 |
| MseI | TTAA | 7 cut(s) | 438, 1151, 1169, 1197, 1202, 1349, 1445 |
| MslI | CAYNNNNRTG | 3 cut(s) | 255, 735, 1102 |
| Msp20I | TGGCCA | 1 cut(s) | 570 |
| MspA1I | CMGCKG | 1 cut(s) | 176 |
| MspI | CCGG | 1 cut(s) | 319 |
| MspR9I | CCNGG | 2 cut(s) | 1302, 1515 |
| Mva1269I | GAATGC | 3 cut(s) | 865, 1213, 1333 |
| MvaI | CCWGG | 2 cut(s) | 1302, 1515 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 319, 482, 1328 |
| NaeI | GCCGGC | 1 cut(s) | 320 |
| NdeI | CATATG | 1 cut(s) | 1099 |
| NdeII | GATC | 3 cut(s) | 103, 370, 580 |
| NgoMIV | GCCGGC | 1 cut(s) | 318 |
| NlaIII | CATG | 4 cut(s) | 209, 721, 734, 1057 |
| NlaIV | GGNNCC | 3 cut(s) | 701, 1265, 1511 |
| NmuCI | GTSAC | 4 cut(s) | 224, 713, 749, 1068 |
| NsiI | ATGCAT | 1 cut(s) | 1213 |
| NspI | RCATGY | 1 cut(s) | 1057 |
| PasI | CCCWGGG | 1 cut(s) | 1514 |
| PceI | AGGCCT | 1 cut(s) | 670 |
| PctI | GAATGC | 3 cut(s) | 865, 1213, 1333 |
| PdiI | GCCGGC | 1 cut(s) | 320 |
| PdmI | GAANNNNTTC | 1 cut(s) | 399 |
| PfeI | GAWTC | 3 cut(s) | 202, 241, 332 |
| PfoI | TCCNGGA | 1 cut(s) | 1300 |
| PkrI | GCNGC | 3 cut(s) | 618, 1406, 1420 |
| PleI | GAGTC | 1 cut(s) | 1178 |
| PpsI | GAGTC | 1 cut(s) | 1178 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1066 |
| Psp6I | CCWGG | 2 cut(s) | 1300, 1513 |
| PspEI | GGTNACC | 1 cut(s) | 749 |
| PspFI | CCCAGC | 3 cut(s) | 384, 1286, 1474 |
| PspGI | CCWGG | 2 cut(s) | 1300, 1513 |
| PspN4I | GGNNCC | 3 cut(s) | 701, 1265, 1511 |
| PspPI | GGNCC | 4 cut(s) | 311, 850, 1024, 1289 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1435 |
| RsaI | GTAC | 4 cut(s) | 34, 629, 1039, 1511 |
| RsaNI | GTAC | 4 cut(s) | 33, 628, 1038, 1510 |
| RseI | CAYNNNNRTG | 3 cut(s) | 255, 735, 1102 |
| SaqAI | TTAA | 7 cut(s) | 438, 1151, 1169, 1197, 1202, 1349, 1445 |
| SatI | GCNGC | 3 cut(s) | 617, 1405, 1419 |
| Sau3AI | GATC | 3 cut(s) | 103, 370, 580 |
| Sau96I | GGNCC | 4 cut(s) | 311, 850, 1024, 1289 |
| ScaI | AGTACT | 1 cut(s) | 1039 |
| SchI | GAGTC | 1 cut(s) | 1178 |
| ScrFI | CCNGG | 2 cut(s) | 1302, 1515 |
| SduI | GDGCHC | 2 cut(s) | 597, 968 |
| SfaNI | GCATC | 3 cut(s) | 346, 679, 1220 |
| SfcI | CTRYAG | 1 cut(s) | 993 |
| SfiI | GGCCNNNNNGGCC | 1 cut(s) | 319 |
| SinI | GGWCC | 1 cut(s) | 1024 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 255, 735, 1102 |
| SseBI | AGGCCT | 1 cut(s) | 670 |
| SsiI | CCGC | 4 cut(s) | 176, 493, 638, 1191 |
| SspMI | CTAG | 5 cut(s) | 324, 620, 827, 897, 1017 |
| StuI | AGGCCT | 1 cut(s) | 670 |
| StyD4I | CCNGG | 2 cut(s) | 1300, 1513 |
| StyI | CCWWGG | 3 cut(s) | 18, 274, 1496 |
| TaaI | ACNGT | 6 cut(s) | 61, 526, 599, 873, 1094, 1355 |
| TaiI | ACGT | 1 cut(s) | 474 |
| TaqI | TCGA | 1 cut(s) | 1060 |
| TatI | WGTACW | 2 cut(s) | 627, 1037 |
| TfiI | GAWTC | 3 cut(s) | 202, 241, 332 |
| Tru1I | TTAA | 7 cut(s) | 438, 1151, 1169, 1197, 1202, 1349, 1445 |
| Tru9I | TTAA | 7 cut(s) | 438, 1151, 1169, 1197, 1202, 1349, 1445 |
| TscAI | CASTG | 8 cut(s) | 292, 469, 529, 602, 688, 1182, 1436, 1510 |
| TseFI | GTSAC | 4 cut(s) | 224, 713, 749, 1068 |
| TseI | GCWGC | 3 cut(s) | 616, 1404, 1418 |
| Tsp45I | GTSAC | 4 cut(s) | 224, 713, 749, 1068 |
| TspDTI | ATGAA | 3 cut(s) | 288, 734, 1064 |
| TspGWI | ACGGA | 1 cut(s) | 987 |
| TspRI | CASTG | 8 cut(s) | 292, 469, 529, 602, 688, 1182, 1436, 1510 |
| VpaK11BI | GGWCC | 1 cut(s) | 1024 |
| XapI | RAATTY | 4 cut(s) | 167, 838, 928, 1461 |
| XceI | RCATGY | 1 cut(s) | 1057 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 203 |
| XmnI | GAANNNNTTC | 1 cut(s) | 399 |
| XspI | CTAG | 5 cut(s) | 324, 620, 827, 897, 1017 |
| ZrmI | AGTACT | 1 cut(s) | 1039 |
| Zsp2I | ATGCAT | 1 cut(s) | 1213 |