E3 ubiquitin-protein ligase
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G15530 AT4G15530 AT4G15530 AT4G15530 AT4G15530 AT4G15530 AT4G15530 |
| fragaria_vesca | FvH4_4g16670 |
| malus_domestica | MD13G1177400.v1.1 MD13G1177500.v1.1 MD16G1179300.v1.1 MD16G1179400.v1.1 MD16G1179500.v1.1 |
| prunus_persica | Prupe.1G146600_v2.0.a1 |
| pyrus_communis | pycom13g15300 pycom16g15050 pycom16g15060 pycom16g15070 |
| rosa_chinensis | RchiOBHm_Chr4g0420131 |
| rosa_laevigata | RLG00000007786 |
| rosa_multiflora | Rmu_sc0001252.1_g000003 Rmu_sc0025222.1_g000001 |
| rosa_roxburghii | Rroxscaffold_5G00362840 |
| rosa_rugosa | Rorug04G0162400 Rorug04G0162500 Rorug04G0162600 Rorug04G0162600 |
| rosa_samantha | Rh4AG223300 Rh4BG225700 Rh4CG236500 Rh4DG222100 |
| rosa_wichuraiana | Rw4G019220 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 447 |
| AarI | CACCTGC | 1 cut(s) | 3029 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 97 |
| Acc36I | ACCTGC | 3 cut(s) | 1855, 3029, 3334 |
| AccB1I | GGYRCC | 2 cut(s) | 188, 312 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 181, 641 |
| AccI | GTMKAC | 2 cut(s) | 2961, 3120 |
| AccII | CGCG | 5 cut(s) | 211, 244, 412, 2004, 2006 |
| AccIII | TCCGGA | 1 cut(s) | 2873 |
| AcoI | YGGCCR | 4 cut(s) | 172, 183, 229, 3318 |
| AcsI | RAATTY | 5 cut(s) | 574, 727, 862, 1765, 3383 |
| AcuI | CTGAAG | 7 cut(s) | 636, 1174, 1259, 1797, 2529, 2765, 3455 |
| AcyI | GRCGYC | 2 cut(s) | 313, 563 |
| AfeI | AGCGCT | 1 cut(s) | 711 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 170, 181, 322, 641, 888, 1079, 1643, 3253 |
| AflIII | ACRYGT | 1 cut(s) | 3520 |
| AgeI | ACCGGT | 1 cut(s) | 551 |
| AjiI | CACGTC | 2 cut(s) | 238, 2968 |
| AjnI | CCWGG | 1 cut(s) | 1759 |
| AluBI | AGCT | 9 cut(s) | 301, 800, 1328, 1555, 1564, 1961, 2502, 2683, 2908 |
| AluI | AGCT | 9 cut(s) | 301, 800, 1328, 1555, 1564, 1961, 2502, 2683, 2908 |
| Alw21I | GWGCWC | 1 cut(s) | 1072 |
| Alw26I | GTCTC | 5 cut(s) | 83, 105, 1127, 2101, 2590 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 2771 |
| Ama87I | CYCGRG | 3 cut(s) | 119, 883, 3048 |
| Aor13HI | TCCGGA | 1 cut(s) | 2873 |
| Aor51HI | AGCGCT | 1 cut(s) | 711 |
| AoxI | GGCC | 8 cut(s) | 139, 157, 172, 183, 229, 268, 511, 3318 |
| ApeKI | GCWGC | 2 cut(s) | 2499, 3214 |
| ApoI | RAATTY | 5 cut(s) | 574, 727, 862, 1765, 3383 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 553, 585 |
| AsiGI | ACCGGT | 1 cut(s) | 551 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 324, 2487, 2853 |
| AspLEI | GCGC | 7 cut(s) | 213, 246, 315, 712, 2004, 2006, 2368 |
| AspS9I | GGNCC | 6 cut(s) | 69, 140, 511, 690, 1634, 2440 |
| AsuC2I | CCSGG | 3 cut(s) | 317, 940, 1349 |
| AsuHPI | GGTGA | 9 cut(s) | 97, 415, 656, 1094, 1532, 1583, 2357, 2999, 3010 |
| AsuII | TTCGAA | 1 cut(s) | 572 |
| AvaI | CYCGRG | 3 cut(s) | 119, 883, 3048 |
| AvaII | GGWCC | 4 cut(s) | 69, 690, 1634, 2440 |
| BaeGI | GKGCMC | 2 cut(s) | 1490, 3495 |
| BalI | TGGCCA | 1 cut(s) | 3320 |
| BamHI | GGATCC | 1 cut(s) | 878 |
| BanI | GGYRCC | 2 cut(s) | 188, 312 |
| BauI | CACGAG | 1 cut(s) | 1794 |
| BbsI | GAAGAC | 3 cut(s) | 121, 1092, 3443 |
| Bbv12I | GWGCWC | 1 cut(s) | 1072 |
| BbvCI | CCTCAGC | 1 cut(s) | 1887 |
| BbvI | GCAGC | 2 cut(s) | 2511, 3201 |
| BceAI | ACGGC | 7 cut(s) | 154, 187, 283, 526, 1614, 2490, 3193 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 1858, 1892, 2954, 2988 |
| BciT130I | CCWGG | 1 cut(s) | 1761 |
| BclI | TGATCA | 1 cut(s) | 2146 |
| BcnI | CCSGG | 3 cut(s) | 317, 940, 1349 |
| BcoDI | GTCTC | 5 cut(s) | 83, 105, 1127, 2101, 2590 |
| BfaI | CTAG | 6 cut(s) | 699, 1626, 2285, 2798, 2858, 3095 |
| BfmI | CTRYAG | 2 cut(s) | 2955, 2976 |
| BfoI | RGCGCY | 3 cut(s) | 316, 713, 2369 |
| BfuAI | ACCTGC | 3 cut(s) | 1855, 3029, 3334 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 252 |
| BglII | AGATCT | 1 cut(s) | 1301 |
| BisI | GCNGC | 5 cut(s) | 247, 566, 2500, 2795, 3215 |
| BlsI | GCNGC | 5 cut(s) | 248, 567, 2501, 2796, 3216 |
| BmcAI | AGTACT | 1 cut(s) | 758 |
| Bme1390I | CCNGG | 4 cut(s) | 317, 940, 1349, 1761 |
| Bme18I | GGWCC | 4 cut(s) | 69, 690, 1634, 2440 |
| BmeT110I | CYCGRG | 3 cut(s) | 119, 883, 3048 |
| BmgBI | CACGTC | 2 cut(s) | 238, 2968 |
| BmgT120I | GGNCC | 6 cut(s) | 69, 140, 511, 690, 1634, 2440 |
| BmrFI | CCNGG | 4 cut(s) | 317, 940, 1349, 1761 |
| BmrI | ACTGGG | 2 cut(s) | 426, 1408 |
| BmsI | GCATC | 7 cut(s) | 1154, 1954, 2962, 3025, 3184, 3219, 3337 |
| BmuI | ACTGGG | 2 cut(s) | 426, 1408 |
| BpiI | GAAGAC | 3 cut(s) | 121, 1092, 3443 |
| BpmI | CTGGAG | 1 cut(s) | 2720 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1887 |
| Bpu14I | TTCGAA | 1 cut(s) | 572 |
| BpuEI | CTTGAG | 1 cut(s) | 2132 |
| BpuMI | CCSGG | 3 cut(s) | 317, 940, 1349 |
| Bsa29I | ATCGAT | 4 cut(s) | 342, 429, 1605, 1947 |
| BsaAI | YACGTR | 1 cut(s) | 2762 |
| BsaHI | GRCGYC | 2 cut(s) | 313, 563 |
| BsaI | GGTCTC | 1 cut(s) | 1127 |
| BsaJI | CCNNGG | 9 cut(s) | 265, 453, 686, 873, 882, 939, 1630, 2066, 3268 |
| BsaWI | WCCGGW | 3 cut(s) | 551, 1568, 2873 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 464, 494, 667, 697 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 170, 181, 322, 641, 888, 1079, 1643, 3253 |
| Bse118I | RCCGGY | 5 cut(s) | 155, 185, 227, 551, 1593 |
| Bse1I | ACTGG | 8 cut(s) | 71, 186, 217, 421, 1057, 1403, 2185, 3321 |
| Bse3DI | GCAATG | 4 cut(s) | 1876, 2494, 2844, 2896 |
| BseAI | TCCGGA | 1 cut(s) | 2873 |
| BseBI | CCWGG | 1 cut(s) | 1761 |
| BseCI | ATCGAT | 4 cut(s) | 342, 429, 1605, 1947 |
| BseDI | CCNNGG | 9 cut(s) | 265, 453, 686, 873, 882, 939, 1630, 2066, 3268 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 170, 181, 322, 641, 888, 1079, 1643, 3253 |
| BseMI | GCAATG | 4 cut(s) | 1876, 2494, 2844, 2896 |
| BseMII | CTCAG | 7 cut(s) | 509, 1878, 2211, 2427, 2638, 3393, 3555 |
| BseNI | ACTGG | 8 cut(s) | 71, 186, 217, 421, 1057, 1403, 2185, 3321 |
| BsePI | GCGCGC | 1 cut(s) | 2002 |
| BseRI | GAGGAG | 3 cut(s) | 62, 371, 1482 |
| BseSI | GKGCMC | 2 cut(s) | 1490, 3495 |
| BseXI | GCAGC | 2 cut(s) | 2511, 3201 |
| BseYI | CCCAGC | 1 cut(s) | 255 |
| BsgI | GTGCAG | 1 cut(s) | 2784 |
| Bsh1236I | CGCG | 5 cut(s) | 211, 244, 412, 2004, 2006 |
| BshFI | GGCC | 8 cut(s) | 141, 159, 174, 185, 231, 270, 513, 3320 |
| BshNI | GGYRCC | 2 cut(s) | 188, 312 |
| BshTI | ACCGGT | 1 cut(s) | 551 |
| BshVI | ATCGAT | 4 cut(s) | 342, 429, 1605, 1947 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1072 |
| BsiHKCI | CYCGRG | 3 cut(s) | 119, 883, 3048 |
| BslFI | GGGAC | 3 cut(s) | 55, 272, 3230 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 170, 181, 322, 641, 888, 1079, 1643, 3253 |
| BsmAI | GTCTC | 5 cut(s) | 83, 105, 1127, 2101, 2590 |
| BsmFI | GGGAC | 3 cut(s) | 55, 272, 3230 |
| BsmI | GAATGC | 3 cut(s) | 1279, 2487, 2853 |
| BsnI | GGCC | 8 cut(s) | 141, 159, 174, 185, 231, 270, 513, 3320 |
| Bso31I | GGTCTC | 1 cut(s) | 1127 |
| BsoBI | CYCGRG | 3 cut(s) | 119, 883, 3048 |
| Bsp119I | TTCGAA | 1 cut(s) | 572 |
| Bsp1286I | GDGCHC | 3 cut(s) | 1072, 1490, 3495 |
| Bsp13I | TCCGGA | 1 cut(s) | 2873 |
| Bsp19I | CCATGG | 3 cut(s) | 453, 2066, 3268 |
| BspANI | GGCC | 8 cut(s) | 141, 159, 174, 185, 231, 270, 513, 3320 |
| BspCNI | CTCAG | 7 cut(s) | 508, 1879, 2210, 2428, 2637, 3392, 3556 |
| BspDI | ATCGAT | 4 cut(s) | 342, 429, 1605, 1947 |
| BspEI | TCCGGA | 1 cut(s) | 2873 |
| BspFNI | CGCG | 5 cut(s) | 211, 244, 412, 2004, 2006 |
| BspMAI | CTGCAG | 1 cut(s) | 2959 |
| BspMI | ACCTGC | 3 cut(s) | 1855, 3029, 3334 |
| BspQI | GCTCTTC | 1 cut(s) | 807 |
| BspT104I | TTCGAA | 1 cut(s) | 572 |
| BspT107I | GGYRCC | 2 cut(s) | 188, 312 |
| BspTNI | GGTCTC | 1 cut(s) | 1127 |
| BsrDI | GCAATG | 4 cut(s) | 1876, 2494, 2844, 2896 |
| BsrFI | RCCGGY | 5 cut(s) | 155, 185, 227, 551, 1593 |
| BsrI | ACTGG | 8 cut(s) | 71, 186, 217, 421, 1057, 1403, 2185, 3321 |
| BssAI | RCCGGY | 5 cut(s) | 155, 185, 227, 551, 1593 |
| BssECI | CCNNGG | 9 cut(s) | 265, 453, 686, 873, 882, 939, 1630, 2066, 3268 |
| BssHII | GCGCGC | 1 cut(s) | 2002 |
| BssNI | GRCGYC | 2 cut(s) | 313, 563 |
| BssSI | CACGAG | 1 cut(s) | 1794 |
| BssT1I | CCWWGG | 4 cut(s) | 453, 873, 2066, 3268 |
| Bst2BI | CACGAG | 1 cut(s) | 1794 |
| Bst2UI | CCWGG | 1 cut(s) | 1761 |
| Bst4CI | ACNGT | 5 cut(s) | 1046, 1067, 2260, 3472, 3535 |
| Bst6I | CTCTTC | 3 cut(s) | 807, 1500, 3252 |
| BstACI | GRCGYC | 2 cut(s) | 313, 563 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 555, 3044, 3356 |
| BstBAI | YACGTR | 1 cut(s) | 2762 |
| BstBI | TTCGAA | 1 cut(s) | 572 |
| BstC8I | GCNNGC | 3 cut(s) | 187, 2004, 3495 |
| BstDEI | CTNAG | 8 cut(s) | 495, 1887, 2197, 2436, 2624, 3331, 3379, 3564 |
| BstDSI | CCRYGG | 6 cut(s) | 265, 453, 686, 1630, 2066, 3268 |
| BstFNI | CGCG | 5 cut(s) | 211, 244, 412, 2004, 2006 |
| BstH2I | RGCGCY | 3 cut(s) | 316, 713, 2369 |
| BstHHI | GCGC | 7 cut(s) | 213, 246, 315, 712, 2004, 2006, 2368 |
| BstMAI | GTCTC | 5 cut(s) | 83, 105, 1127, 2101, 2590 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 252, 261, 418, 555, 1561, 3044, 3214, 3326, 3356 |
| BstNI | CCWGG | 1 cut(s) | 1761 |
| BstNSI | RCATGY | 3 cut(s) | 118, 3242, 3524 |
| BstSCI | CCNGG | 4 cut(s) | 315, 938, 1347, 1759 |
| BstSFI | CTRYAG | 2 cut(s) | 2955, 2976 |
| BstSLI | GKGCMC | 2 cut(s) | 1490, 3495 |
| BstUI | CGCG | 5 cut(s) | 211, 244, 412, 2004, 2006 |
| BstV1I | GCAGC | 2 cut(s) | 2511, 3201 |
| BstV2I | GAAGAC | 3 cut(s) | 121, 1092, 3443 |
| BstX2I | RGATCY | 5 cut(s) | 839, 878, 1301, 2190, 3162 |
| BstYI | RGATCY | 5 cut(s) | 839, 878, 1301, 2190, 3162 |
| Bsu15I | ATCGAT | 4 cut(s) | 342, 429, 1605, 1947 |
| BsuRI | GGCC | 8 cut(s) | 141, 159, 174, 185, 231, 270, 513, 3320 |
| BsuTUI | ATCGAT | 4 cut(s) | 342, 429, 1605, 1947 |
| BtgI | CCRYGG | 6 cut(s) | 265, 453, 686, 1630, 2066, 3268 |
| BtgZI | GCGATG | 1 cut(s) | 2423 |
| BtrI | CACGTC | 2 cut(s) | 238, 2968 |
| BtsI | GCAGTG | 2 cut(s) | 1291, 2952 |
| BtsIMutI | CAGTG | 8 cut(s) | 1051, 1063, 1235, 1291, 2192, 2433, 2741, 2952 |
| BveI | ACCTGC | 3 cut(s) | 1855, 3029, 3334 |
| Cac8I | GCNNGC | 3 cut(s) | 187, 2004, 3495 |
| CaiI | CAGNNNCTG | 1 cut(s) | 2771 |
| CfoI | GCGC | 7 cut(s) | 213, 246, 315, 712, 2004, 2006, 2368 |
| Cfr10I | RCCGGY | 5 cut(s) | 155, 185, 227, 551, 1593 |
| Cfr13I | GGNCC | 6 cut(s) | 69, 140, 511, 690, 1634, 2440 |
| ClaI | ATCGAT | 4 cut(s) | 342, 429, 1605, 1947 |
| CseI | GACGC | 2 cut(s) | 571, 2930 |
| CspAI | ACCGGT | 1 cut(s) | 551 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 648, 683 |
| DdeI | CTNAG | 8 cut(s) | 495, 1887, 2197, 2436, 2624, 3331, 3379, 3564 |
| DinI | GGCGCC | 1 cut(s) | 314 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 97 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 97 |
| EaeI | YGGCCR | 4 cut(s) | 172, 183, 229, 3318 |
| Eam1104I | CTCTTC | 3 cut(s) | 807, 1500, 3252 |
| EarI | CTCTTC | 3 cut(s) | 807, 1500, 3252 |
| Eco130I | CCWWGG | 4 cut(s) | 453, 873, 2066, 3268 |
| Eco31I | GGTCTC | 1 cut(s) | 1127 |
| Eco32I | GATATC | 1 cut(s) | 2671 |
| Eco47I | GGWCC | 4 cut(s) | 69, 690, 1634, 2440 |
| Eco47III | AGCGCT | 1 cut(s) | 711 |
| Eco57I | CTGAAG | 7 cut(s) | 636, 1174, 1259, 1797, 2529, 2765, 3455 |
| Eco88I | CYCGRG | 3 cut(s) | 119, 883, 3048 |
| EcoO109I | RGGNCCY | 2 cut(s) | 511, 2440 |
| EcoRI | GAATTC | 1 cut(s) | 3383 |
| EcoRII | CCWGG | 1 cut(s) | 1759 |
| EcoRV | GATATC | 1 cut(s) | 2671 |
| EcoT14I | CCWWGG | 4 cut(s) | 453, 873, 2066, 3268 |
| EcoT22I | ATGCAT | 2 cut(s) | 1281, 2080 |
| EgeI | GGCGCC | 1 cut(s) | 314 |
| EheI | GGCGCC | 1 cut(s) | 314 |
| ErhI | CCWWGG | 4 cut(s) | 453, 873, 2066, 3268 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 1239, 1271, 2871, 2903 |
| FaqI | GGGAC | 3 cut(s) | 55, 272, 3230 |
| FauI | CCCGC | 1 cut(s) | 3502 |
| FauNDI | CATATG | 1 cut(s) | 916 |
| FbaI | TGATCA | 1 cut(s) | 2146 |
| FblI | GTMKAC | 2 cut(s) | 2961, 3120 |
| Fnu4HI | GCNGC | 5 cut(s) | 247, 566, 2500, 2795, 3215 |
| Fsp4HI | GCNGC | 5 cut(s) | 247, 566, 2500, 2795, 3215 |
| FspBI | CTAG | 6 cut(s) | 699, 1626, 2285, 2798, 2858, 3095 |
| GlaI | GCGC | 7 cut(s) | 212, 245, 314, 711, 2003, 2005, 2367 |
| GluI | GCNGC | 5 cut(s) | 247, 566, 2500, 2795, 3215 |
| GsaI | CCCAGC | 1 cut(s) | 259 |
| GsuI | CTGGAG | 1 cut(s) | 2720 |
| HaeII | RGCGCY | 3 cut(s) | 316, 713, 2369 |
| HaeIII | GGCC | 8 cut(s) | 141, 159, 174, 185, 231, 270, 513, 3320 |
| HgaI | GACGC | 2 cut(s) | 571, 2930 |
| HhaI | GCGC | 7 cut(s) | 213, 246, 315, 712, 2004, 2006, 2368 |
| Hin1I | GRCGYC | 2 cut(s) | 313, 563 |
| Hin6I | GCGC | 7 cut(s) | 211, 244, 313, 710, 2002, 2004, 2366 |
| HinP1I | GCGC | 7 cut(s) | 211, 244, 313, 710, 2002, 2004, 2366 |
| HincII | GTYRAC | 2 cut(s) | 907, 3061 |
| HindII | GTYRAC | 2 cut(s) | 907, 3061 |
| HindIII | AAGCTT | 1 cut(s) | 1562 |
| HphI | GGTGA | 9 cut(s) | 97, 415, 656, 1094, 1532, 1583, 2357, 2999, 3010 |
| Hpy166II | GTNNAC | 8 cut(s) | 690, 772, 907, 1063, 2656, 2962, 3061, 3121 |
| Hpy8I | GTNNAC | 8 cut(s) | 690, 772, 907, 1063, 2656, 2962, 3061, 3121 |
| Hpy99I | CGWCG | 4 cut(s) | 140, 281, 779, 2969 |
| HpyCH4III | ACNGT | 5 cut(s) | 1046, 1067, 2260, 3472, 3535 |
| HpyCH4IV | ACGT | 9 cut(s) | 126, 237, 774, 1657, 2017, 2533, 2761, 2967, 3404 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 252, 261, 418, 555, 1561, 3044, 3214, 3326, 3356 |
| HpyF3I | CTNAG | 8 cut(s) | 495, 1887, 2197, 2436, 2624, 3331, 3379, 3564 |
| HpySE526I | ACGT | 9 cut(s) | 126, 237, 774, 1657, 2017, 2533, 2761, 2967, 3404 |
| Hsp92I | GRCGYC | 2 cut(s) | 313, 563 |
| HspAI | GCGC | 7 cut(s) | 211, 244, 313, 710, 2002, 2004, 2366 |
| KasI | GGCGCC | 1 cut(s) | 312 |
| Kpn2I | TCCGGA | 1 cut(s) | 2873 |
| KroI | GCCGGC | 1 cut(s) | 185 |
| KroNI | GCCGGC | 1 cut(s) | 187 |
| Ksp22I | TGATCA | 1 cut(s) | 2146 |
| LguI | GCTCTTC | 1 cut(s) | 807 |
| LmnI | GCTCC | 5 cut(s) | 366, 1075, 1354, 1958, 2419 |
| Lsp1109I | GCAGC | 2 cut(s) | 2511, 3201 |
| LweI | GCATC | 7 cut(s) | 1154, 1954, 2962, 3025, 3184, 3219, 3337 |
| MaeI | CTAG | 6 cut(s) | 699, 1626, 2285, 2798, 2858, 3095 |
| MaeII | ACGT | 9 cut(s) | 126, 237, 774, 1657, 2017, 2533, 2761, 2967, 3404 |
| MaeIII | GTNAC | 4 cut(s) | 238, 373, 1033, 2881 |
| MfeI | CAATTG | 4 cut(s) | 95, 1435, 1935, 3351 |
| MflI | RGATCY | 5 cut(s) | 839, 878, 1301, 2190, 3162 |
| MhlI | GDGCHC | 3 cut(s) | 1072, 1490, 3495 |
| MlsI | TGGCCA | 1 cut(s) | 3320 |
| MluNI | TGGCCA | 1 cut(s) | 3320 |
| Mly113I | GGCGCC | 1 cut(s) | 313 |
| MlyI | GAGTC | 7 cut(s) | 85, 1786, 1869, 2218, 3032, 3101, 3122 |
| MmeI | TCCRAC | 2 cut(s) | 906, 2493 |
| Mox20I | TGGCCA | 1 cut(s) | 3320 |
| Mph1103I | ATGCAT | 2 cut(s) | 1281, 2080 |
| MroI | TCCGGA | 1 cut(s) | 2873 |
| MroNI | GCCGGC | 1 cut(s) | 185 |
| MroXI | GAANNNNTTC | 3 cut(s) | 324, 2487, 2853 |
| MscI | TGGCCA | 1 cut(s) | 3320 |
| MslI | CAYNNNNRTG | 3 cut(s) | 1814, 2649, 3018 |
| Msp20I | TGGCCA | 1 cut(s) | 3320 |
| MspA1I | CMGCKG | 1 cut(s) | 3497 |
| MspR9I | CCNGG | 4 cut(s) | 317, 940, 1349, 1761 |
| MunI | CAATTG | 4 cut(s) | 95, 1435, 1935, 3351 |
| Mva1269I | GAATGC | 3 cut(s) | 1279, 2487, 2853 |
| MvaI | CCWGG | 1 cut(s) | 1761 |
| MvnI | CGCG | 5 cut(s) | 211, 244, 412, 2004, 2006 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 252, 261, 418, 555, 1561, 3044, 3214, 3326, 3356 |
| NaeI | GCCGGC | 1 cut(s) | 187 |
| NarI | GGCGCC | 1 cut(s) | 313 |
| NciI | CCSGG | 3 cut(s) | 317, 940, 1349 |
| NcoI | CCATGG | 3 cut(s) | 453, 2066, 3268 |
| NdeI | CATATG | 1 cut(s) | 916 |
| NgoMIV | GCCGGC | 1 cut(s) | 185 |
| NmuCI | GTSAC | 1 cut(s) | 238 |
| NsiI | ATGCAT | 2 cut(s) | 1281, 2080 |
| NspI | RCATGY | 3 cut(s) | 118, 3242, 3524 |
| NspV | TTCGAA | 1 cut(s) | 572 |
| PaeR7I | CTCGAG | 1 cut(s) | 3048 |
| PaqCI | CACCTGC | 1 cut(s) | 3029 |
| PauI | GCGCGC | 1 cut(s) | 2002 |
| PciI | ACATGT | 1 cut(s) | 3520 |
| PciSI | GCTCTTC | 1 cut(s) | 807 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 132, 273, 569 |
| PctI | GAATGC | 3 cut(s) | 1279, 2487, 2853 |
| PdiI | GCCGGC | 1 cut(s) | 187 |
| PdmI | GAANNNNTTC | 3 cut(s) | 324, 2487, 2853 |
| PfeI | GAWTC | 9 cut(s) | 55, 647, 785, 848, 1428, 1479, 1541, 1858, 3066 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 181, 641 |
| PfoI | TCCNGGA | 1 cut(s) | 1759 |
| PinAI | ACCGGT | 1 cut(s) | 551 |
| PkrI | GCNGC | 5 cut(s) | 248, 567, 2501, 2796, 3216 |
| PleI | GAGTC | 7 cut(s) | 85, 1786, 1869, 2217, 3031, 3101, 3122 |
| PluTI | GGCGCC | 1 cut(s) | 316 |
| PpsI | GAGTC | 7 cut(s) | 85, 1786, 1869, 2217, 3031, 3101, 3122 |
| Ppu21I | YACGTR | 1 cut(s) | 2762 |
| PpuMI | RGGWCCY | 1 cut(s) | 2440 |
| PscI | ACATGT | 1 cut(s) | 3520 |
| PsiI | TTATAA | 1 cut(s) | 447 |
| Psp5II | RGGWCCY | 1 cut(s) | 2440 |
| Psp6I | CCWGG | 1 cut(s) | 1759 |
| PspFI | CCCAGC | 1 cut(s) | 255 |
| PspGI | CCWGG | 1 cut(s) | 1759 |
| PspPI | GGNCC | 6 cut(s) | 69, 140, 511, 690, 1634, 2440 |
| PspPPI | RGGWCCY | 1 cut(s) | 2440 |
| PstI | CTGCAG | 1 cut(s) | 2959 |
| PstNI | CAGNNNCTG | 1 cut(s) | 2771 |
| PsuI | RGATCY | 5 cut(s) | 839, 878, 1301, 2190, 3162 |
| PteI | GCGCGC | 1 cut(s) | 2002 |
| RseI | CAYNNNNRTG | 3 cut(s) | 1814, 2649, 3018 |
| SapI | GCTCTTC | 1 cut(s) | 807 |
| SatI | GCNGC | 5 cut(s) | 247, 566, 2500, 2795, 3215 |
| Sau96I | GGNCC | 6 cut(s) | 69, 140, 511, 690, 1634, 2440 |
| ScaI | AGTACT | 1 cut(s) | 758 |
| SchI | GAGTC | 7 cut(s) | 85, 1786, 1869, 2218, 3032, 3101, 3122 |
| ScrFI | CCNGG | 4 cut(s) | 317, 940, 1349, 1761 |
| SduI | GDGCHC | 3 cut(s) | 1072, 1490, 3495 |
| SfaNI | GCATC | 7 cut(s) | 1154, 1954, 2962, 3025, 3184, 3219, 3337 |
| SfcI | CTRYAG | 2 cut(s) | 2955, 2976 |
| SfoI | GGCGCC | 1 cut(s) | 314 |
| Sfr274I | CTCGAG | 1 cut(s) | 3048 |
| SfuI | TTCGAA | 1 cut(s) | 572 |
| SinI | GGWCC | 4 cut(s) | 69, 690, 1634, 2440 |
| SlaI | CTCGAG | 1 cut(s) | 3048 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 1814, 2649, 3018 |
| SmlI | CTYRAG | 2 cut(s) | 2111, 3048 |
| SmoI | CTYRAG | 2 cut(s) | 2111, 3048 |
| SspDI | GGCGCC | 1 cut(s) | 312 |
| SspI | AATATT | 1 cut(s) | 2587 |
| SspMI | CTAG | 6 cut(s) | 699, 1626, 2285, 2798, 2858, 3095 |
| StyD4I | CCNGG | 4 cut(s) | 315, 938, 1347, 1759 |
| StyI | CCWWGG | 4 cut(s) | 453, 873, 2066, 3268 |
| TaaI | ACNGT | 5 cut(s) | 1046, 1067, 2260, 3472, 3535 |
| TaiI | ACGT | 9 cut(s) | 129, 240, 777, 1660, 2020, 2536, 2764, 2970, 3407 |
| TaqII | GACCGA | 1 cut(s) | 3455 |
| TatI | WGTACW | 2 cut(s) | 348, 756 |
| TauI | GCSGC | 3 cut(s) | 249, 568, 2797 |
| TfiI | GAWTC | 9 cut(s) | 55, 647, 785, 848, 1428, 1479, 1541, 1858, 3066 |
| TscAI | CASTG | 8 cut(s) | 1051, 1070, 1242, 1298, 2192, 2440, 2748, 2959 |
| TseFI | GTSAC | 1 cut(s) | 238 |
| TseI | GCWGC | 2 cut(s) | 2499, 3214 |
| Tsp45I | GTSAC | 1 cut(s) | 238 |
| TspGWI | ACGGA | 2 cut(s) | 675, 2216 |
| TspRI | CASTG | 8 cut(s) | 1051, 1070, 1242, 1298, 2192, 2440, 2748, 2959 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 181, 641 |
| VpaK11BI | GGWCC | 4 cut(s) | 69, 690, 1634, 2440 |
| XapI | RAATTY | 5 cut(s) | 574, 727, 862, 1765, 3383 |
| XbaI | TCTAGA | 2 cut(s) | 2284, 3094 |
| XceI | RCATGY | 3 cut(s) | 118, 3242, 3524 |
| XhoI | CTCGAG | 1 cut(s) | 3048 |
| XmiI | GTMKAC | 2 cut(s) | 2961, 3120 |
| XmnI | GAANNNNTTC | 3 cut(s) | 324, 2487, 2853 |
| XspI | CTAG | 6 cut(s) | 699, 1626, 2285, 2798, 2858, 3095 |
| ZrmI | AGTACT | 1 cut(s) | 758 |
| Zsp2I | ATGCAT | 2 cut(s) | 1281, 2080 |