Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0004385

Physical Location & Seq

Genomic Coordinates Forward (+)

28310854 .. 28315429

Gene Structure 4576 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0162500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

ATGTTACGTTTCAGACTCACCAACTGTGTCTCTCTCCTCTTTCTGGGCTTTGCTTTCTTCTACTACTATTACACAGATCAATTTTCTTCTTCTCACACTATGGCTGCAGACAGTTCCAAATCTATTTACGAATTCACTGTCAAGGATATTCATGGAAATGATGTAAAGCTAAGTGAGTACAGTGGCAAGGTTCTTCTGATTGTGAATGTTGCTTCAAAATGTGGTTTCACACAATCCAACTACAAGGAATTAAATATTTTGTATGAAAAGTACAAAAACAAAGGTTTTGAGATCTTGGCATTTCCTTGCAACCAATTTGCAGGACAAGAGCCAGGAAACAATGAGGAGATTCAGGAAGTTGCATGCACGAGGTTGAAAGCTGAATTTCCAATATTTGACAAGATCGAGGTGAATGGGAAGAATGAGGCTCCCCTTTACAAGTTCTTAAAATTGGAGAAAGGCGGTCTCTTTGGAAATGGCATCAAATGGAACTTTACCAAGTTTTTGGTAAACAAAGAAGGGAAGGTTGTGGAGAGATATGCTCCTGTGACAGCACCTCTCAAAATTGAGAAAGACATCCAGAATCTATTGGAATCTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00620 ko00710 ko00720 ko01100 ko01120 ko01200 map00620 map00710 map00720 map01100 map01120 map01200

Pfam Domains

Protein Families

PEP-utilizers PEP-utilizers_C PPDK_N

Protein Analysis

200

Amino Acids

22.88

Weight (kDa)

8.21

Isoelectric Point (pI)

36.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GSHPx	PF00255	42 - 150	2.1e-43	Glutathione peroxidase
AhpC-TSA	PF00578	42 - 104	3.3e-08	AhpC/TSA family
Redoxin	PF08534	43 - 101	4.6e-06	Redoxin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004385)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G15530 AT4G15530 AT4G15530 AT4G15530 AT4G15530 AT4G15530 AT4G15530
fragaria_vesca	FvH4_4g16670
malus_domestica	MD13G1177400.v1.1 MD13G1177500.v1.1 MD16G1179300.v1.1 MD16G1179400.v1.1 MD16G1179500.v1.1
prunus_persica	Prupe.1G146600_v2.0.a1
pyrus_communis	pycom13g15300 pycom16g15050 pycom16g15060 pycom16g15070
rosa_chinensis	RchiOBHm_Chr4g0420131
rosa_laevigata	RLG00000007786
rosa_multiflora	Rmu_sc0001252.1_g000003 Rmu_sc0025222.1_g000001
rosa_roxburghii	Rroxscaffold_5G00362840
rosa_rugosa	Rorug04G0162400 Rorug04G0162500 Rorug04G0162600 Rorug04G0162600
rosa_samantha	Rh4AG223300 Rh4BG225700 Rh4CG236500 Rh4DG222100
rosa_wichuraiana	Rw4G019220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	462
AcsI	RAATTY	2 cut(s)	131, 383
AfaI	GTAC	2 cut(s)	179, 272
AfiI	CCNNNNNNNGG	1 cut(s)	43
AgsI	TTSAA	2 cut(s)	216, 376
AjnI	CCWGG	1 cut(s)	331
AluBI	AGCT	2 cut(s)	169, 380
AluI	AGCT	2 cut(s)	169, 380
Alw26I	GTCTC	2 cut(s)	34, 470
ApeKI	GCWGC	1 cut(s)	104
ApoI	RAATTY	2 cut(s)	131, 383
ArsI	GACNNNNNNTTYG	2 cut(s)	123, 155
AsuHPI	GGTGA	2 cut(s)	10, 421
BauI	CACGAG	1 cut(s)	367
BbvI	GCAGC	1 cut(s)	91
BciT130I	CCWGG	1 cut(s)	333
BcoDI	GTCTC	2 cut(s)	34, 470
BfmI	CTRYAG	1 cut(s)	105
BglII	AGATCT	1 cut(s)	291
BisI	GCNGC	1 cut(s)	105
BlsI	GCNGC	1 cut(s)	106
Bme1390I	CCNGG	1 cut(s)	333
BmiI	GGNNCC	1 cut(s)	429
BmrFI	CCNGG	1 cut(s)	333
BmsI	GCATC	1 cut(s)	489
BplI	GAGNNNNNCTC	2 cut(s)	526, 558
BsaI	GGTCTC	1 cut(s)	470
Bsc4I	CCNNNNNNNGG	1 cut(s)	43
BseBI	CCWGG	1 cut(s)	333
BseGI	GGATG	1 cut(s)	576
BseLI	CCNNNNNNNGG	1 cut(s)	43
BseRI	GAGGAG	2 cut(s)	26, 359
BseXI	GCAGC	1 cut(s)	91
BslI	CCNNNNNNNGG	1 cut(s)	43
BsmAI	GTCTC	2 cut(s)	34, 470
Bso31I	GGTCTC	1 cut(s)	470
Bsp143I	GATC	3 cut(s)	76, 291, 402
BspACI	CCGC	1 cut(s)	462
BspLI	GGNNCC	1 cut(s)	429
BspMAI	CTGCAG	1 cut(s)	109
BspTNI	GGTCTC	1 cut(s)	470
BssMI	GATC	3 cut(s)	76, 291, 402
BssSI	CACGAG	1 cut(s)	367
Bst2BI	CACGAG	1 cut(s)	367
Bst2UI	CCWGG	1 cut(s)	333
Bst4CI	ACNGT	4 cut(s)	26, 113, 139, 182
BstC8I	GCNNGC	1 cut(s)	364
BstDEI	CTNAG	1 cut(s)	170
BstF5I	GGATG	1 cut(s)	576
BstKTI	GATC	3 cut(s)	79, 294, 405
BstMAI	GTCTC	2 cut(s)	34, 470
BstMBI	GATC	3 cut(s)	76, 291, 402
BstNI	CCWGG	1 cut(s)	333
BstNSI	RCATGY	1 cut(s)	366
BstSCI	CCNGG	1 cut(s)	331
BstSFI	CTRYAG	1 cut(s)	105
BstV1I	GCAGC	1 cut(s)	91
BstX2I	RGATCY	1 cut(s)	291
BstXI	CCANNNNNNTGG	1 cut(s)	505
BstYI	RGATCY	1 cut(s)	291
BtsCI	GGATG	1 cut(s)	576
BtsIMutI	CAGTG	2 cut(s)	135, 187
Cac8I	GCNNGC	1 cut(s)	364
Csp6I	GTAC	2 cut(s)	178, 271
CviAII	CATG	2 cut(s)	152, 363
CviJI	RGCY	6 cut(s)	48, 104, 169, 331, 380, 428
CviKI_1	RGCY	6 cut(s)	48, 104, 169, 331, 380, 428
CviQI	GTAC	2 cut(s)	178, 271
DdeI	CTNAG	1 cut(s)	170
DpnI	GATC	3 cut(s)	78, 293, 404
DpnII	GATC	3 cut(s)	76, 291, 402
Eco31I	GGTCTC	1 cut(s)	470
EcoRI	GAATTC	1 cut(s)	131
EcoRII	CCWGG	1 cut(s)	331
FaeI	CATG	2 cut(s)	155, 366
FaiI	YATR	5 cut(s)	101, 153, 264, 364, 540
FatI	CATG	2 cut(s)	151, 362
Fnu4HI	GCNGC	1 cut(s)	105
FokI	GGATG	1 cut(s)	563
Fsp4HI	GCNGC	1 cut(s)	105
GluI	GCNGC	1 cut(s)	105
Hin1II	CATG	2 cut(s)	155, 366
HinfI	GANTC	4 cut(s)	15, 349, 583, 593
HphI	GGTGA	2 cut(s)	10, 421
Hpy166II	GTNNAC	1 cut(s)	511
Hpy188I	TCNGA	2 cut(s)	14, 198
Hpy188III	TCNNGA	3 cut(s)	353, 580, 600
Hpy8I	GTNNAC	1 cut(s)	511
HpyAV	CCTTC	2 cut(s)	512, 517
HpyCH4III	ACNGT	4 cut(s)	26, 113, 139, 182
HpyCH4IV	ACGT	1 cut(s)	7
HpyCH4V	TGCA	5 cut(s)	107, 309, 320, 362, 366
HpyF3I	CTNAG	1 cut(s)	170
HpySE526I	ACGT	1 cut(s)	7
Hsp92II	CATG	2 cut(s)	155, 366
Kzo9I	GATC	3 cut(s)	76, 291, 402
LmnI	GCTCC	2 cut(s)	433, 547
LpnPI	CCDG	7 cut(s)	29, 306, 318, 338, 345, 558, 593
Lsp1109I	GCAGC	1 cut(s)	91
LweI	GCATC	1 cut(s)	489
MaeII	ACGT	1 cut(s)	7
MaeIII	GTNAC	2 cut(s)	3, 547
MalI	GATC	3 cut(s)	78, 293, 404
MboI	GATC	3 cut(s)	76, 291, 402
MboII	GAAGA	6 cut(s)	49, 78, 81, 185, 430, 588
MflI	RGATCY	1 cut(s)	291
MluCI	AATT	7 cut(s)	80, 131, 248, 314, 383, 449, 564
MlyI	GAGTC	1 cut(s)	9
MmeI	TCCRAC	1 cut(s)	261
MnlI	CCTC	6 cut(s)	47, 337, 363, 400, 418, 567
MseI	TTAA	2 cut(s)	251, 446
MslI	CAYNNNNRTG	1 cut(s)	156
MspR9I	CCNGG	1 cut(s)	333
MvaI	CCWGG	1 cut(s)	333
NdeII	GATC	3 cut(s)	76, 291, 402
NlaIII	CATG	2 cut(s)	155, 366
NlaIV	GGNNCC	1 cut(s)	429
NmuCI	GTSAC	1 cut(s)	547
NspI	RCATGY	1 cut(s)	366
PaeI	GCATGC	1 cut(s)	366
PfeI	GAWTC	3 cut(s)	349, 583, 593
PkrI	GCNGC	1 cut(s)	106
PleI	GAGTC	1 cut(s)	9
PpsI	GAGTC	1 cut(s)	9
Psp6I	CCWGG	1 cut(s)	331
PspGI	CCWGG	1 cut(s)	331
PspN4I	GGNNCC	1 cut(s)	429
PstI	CTGCAG	1 cut(s)	109
PsuI	RGATCY	1 cut(s)	291
RsaI	GTAC	2 cut(s)	179, 272
RsaNI	GTAC	2 cut(s)	178, 271
RseI	CAYNNNNRTG	1 cut(s)	156
SaqAI	TTAA	2 cut(s)	251, 446
SatI	GCNGC	1 cut(s)	105
Sau3AI	GATC	3 cut(s)	76, 291, 402
SchI	GAGTC	1 cut(s)	9
ScrFI	CCNGG	1 cut(s)	333
SetI	ASST	9 cut(s)	10, 171, 192, 286, 374, 382, 411, 528, 559
SfaNI	GCATC	1 cut(s)	489
SfcI	CTRYAG	1 cut(s)	105
SmiMI	CAYNNNNRTG	1 cut(s)	156
SphI	GCATGC	1 cut(s)	366
Sse9I	AATT	7 cut(s)	80, 131, 248, 314, 383, 449, 564
SsiI	CCGC	1 cut(s)	462
SspI	AATATT	2 cut(s)	256, 393
StyD4I	CCNGG	1 cut(s)	331
TaaI	ACNGT	4 cut(s)	26, 113, 139, 182
TaiI	ACGT	1 cut(s)	10
TaqI	TCGA	1 cut(s)	405
TasI	AATT	7 cut(s)	80, 131, 248, 314, 383, 449, 564
TatI	WGTACW	2 cut(s)	177, 270
TfiI	GAWTC	3 cut(s)	349, 583, 593
Tru1I	TTAA	2 cut(s)	251, 446
Tru9I	TTAA	2 cut(s)	251, 446
TscAI	CASTG	2 cut(s)	142, 187
TseFI	GTSAC	1 cut(s)	547
TseI	GCWGC	1 cut(s)	104
Tsp45I	GTSAC	1 cut(s)	547
TspDTI	ATGAA	2 cut(s)	140, 279
TspRI	CASTG	2 cut(s)	142, 187
XapI	RAATTY	2 cut(s)	131, 383
XceI	RCATGY	1 cut(s)	366

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.