Rmu_sc0025222.1_g000001

Pyruvate phosphate dikinase

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0025222.1
Physical Location & Seq
Forward (+)
81 .. 3094
3014 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0025222.1_g000001.1.cds

Sequence Viewer

Length: 1614 bp
atgtcacatatcaaaccaacccaaaccgccatttttcgttctctgaagaagctctgcaactcaaaacacccagtgaggaagcctataaatagggacacaaagacagtgaaaatgtcatccacagtgaaaggtttactcttgaggacttcaccggaggtagcttatagacacagaatgttcaacgatcgttctttcctcaacggcgtgaacggtggctccacccgagccggccagacccggcatcagcctcacgttgctaccataacaaatgggatcaccaaccccagtcctaagaaaaatgagctgcagagccagatcggagcccagcctatgatgtcaccagttttggacccgagtactccaacaacgcacaagagggtttttacttttgggaagggaaggagtgaaggaaacaagggcatgaagtcactgttgggagggaagggtgcaaacctggctgaaatggctagcatcgggctatccgtgccacctgggcttactatctcaacagaagcatgccaagagtatcaggagaatggtaaagaattaccggaaggtttgtgggaggagatactggaaggcttggattatgtgcagaagactatgggagctactcttggtgacccttccaagcccctccttgtctctgttcgctctggtgcagcgatttctatgcctggcatgatggacactgtcctcaaccttggactgaatgatgaggtggttgctggtttagctgtaaaaagtggggagcgctttgcatatgactcatacagacgtttcctagacatgtttggagatgttgttatggaaattccacactcatcatttggggagaagttggaaaactacaaacaccaaaaaggagttgaacttgatacagagctaacagcttctgatctcaaagagctggtagaacaatacaaaagtgtctatcttgaagctacgggtcaaaaattcccttcagatccaaaacaacagctagtgttggctattaaagcagtttttaattcttgggacagcccgagggccaacaaataccggagcatcaatcagataactggtttaaagggaactgcagttaacattcaaagcatggcttttgggaacatgggaagcacttcagggacaggtgttctattcactagaaatccaagcactggtgaaaagaagctctatggggagtttctagtcaatgctcagggagaagatgtagttgccggtattaggacaccagaacctttggataccatgaaaaattgcatgccagaagcttacaaggagcttgtggagaactgtgaaattctagaaagacattacaaagatatgatggacattgagttcactgtccaagaaaatagattatggatgttgcaatgtcgtactggaaagcgtactggtaaaggtgcggtcaagatagctgtagacatggttaatgaagggcttgttgaaaagcgcaccgcaatcaagatggtggaaccacaacatgttgaccaacttctacaccctcaggtatttatgctcatttctaacacagaaaacagagaaagtttagattgcttagaaatagtgaatatatctgcctataggtttaatatatctgctatatattaa

Protein Analysis

537

Amino Acids

59.48

Weight (kDa)

8.64

Isoelectric Point (pI)

42.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1160
AccI GTMKAC 1 cut(s) 1425
AciI CCGC 3 cut(s) 27, 1409, 1461
AclWI GGATC 2 cut(s) 281, 962
AcoI YGGCCR 1 cut(s) 229
AcsI RAATTY 3 cut(s) 813, 956, 1302
AcuI CTGAAG 3 cut(s) 65, 948, 1107
AdeI CACNNNGTG 1 cut(s) 73
AfaI GTAC 3 cut(s) 358, 1384, 1396
AfeI AGCGCT 1 cut(s) 755
AfiI CCNNNNNNNGG 2 cut(s) 1160, 1227
AflIII ACRYGT 2 cut(s) 789, 1486
AgsI TTSAA 5 cut(s) 181, 872, 941, 1091, 1451
AjnI CCWGG 3 cut(s) 453, 490, 676
AjuI GAANNNNNNNTTGG 2 cut(s) 416, 448
AloI GAACNNNNNNTCC 4 cut(s) 200, 232, 1325, 1357
Alw26I GTCTC 1 cut(s) 649
AlwI GGATC 2 cut(s) 281, 962
AlwNI CAGNNNCTG 1 cut(s) 896
Ama87I CYCGRG 3 cut(s) 222, 352, 1024
Aor51HI AGCGCT 1 cut(s) 755
AoxI GGCC 2 cut(s) 229, 1029
ApeKI GCWGC 2 cut(s) 304, 662
ApoI RAATTY 3 cut(s) 813, 956, 1302
Asp700I GAANNNNTTC 1 cut(s) 1120
AspLEI GCGC 2 cut(s) 756, 1458
AspS9I GGNCC 2 cut(s) 349, 1029
AsuC2I CCSGG 1 cut(s) 238
AsuHPI GGTGA 5 cut(s) 141, 268, 330, 632, 1175
AsuNHI GCTAGC 1 cut(s) 467
AvaI CYCGRG 3 cut(s) 222, 352, 1024
AvaII GGWCC 1 cut(s) 349
AxyI CCTNAGG 1 cut(s) 1509
BanII GRGCYC 1 cut(s) 325
BbsI GAAGAC 1 cut(s) 605
BbvI GCAGC 2 cut(s) 291, 674
BccI CCATC 3 cut(s) 679, 1324, 1465
BceAI ACGGC 1 cut(s) 217
BcgI CGANNNNNNTGC 2 cut(s) 655, 689
BciT130I CCWGG 3 cut(s) 455, 492, 678
BciVI GTATCC 1 cut(s) 1240
BcnI CCSGG 1 cut(s) 238
BcoDI GTCTC 1 cut(s) 649
BfaI CTAG 6 cut(s) 468, 785, 983, 1146, 1190, 1307
BfmI CTRYAG 4 cut(s) 305, 1077, 1422, 1585
BfoI RGCGCY 1 cut(s) 757
BfuI GTATCC 1 cut(s) 1240
BglI GCCNNNNNGGC 1 cut(s) 493
BisI GCNGC 2 cut(s) 305, 663
BlsI GCNGC 2 cut(s) 306, 664
BmcAI AGTACT 1 cut(s) 358
Bme1390I CCNGG 4 cut(s) 238, 455, 492, 678
Bme18I GGWCC 1 cut(s) 349
BmeT110I CYCGRG 3 cut(s) 222, 352, 1024
BmgT120I GGNCC 2 cut(s) 349, 1029
BmiI GGNNCC 4 cut(s) 217, 322, 351, 1479
BmrFI CCNGG 4 cut(s) 238, 455, 492, 678
BmrI ACTGGG 2 cut(s) 65, 279
BmsI GCATC 3 cut(s) 250, 480, 1056
BmtI GCTAGC 1 cut(s) 471
BmuI ACTGGG 2 cut(s) 65, 279
BpiI GAAGAC 1 cut(s) 605
Bpu10I CCTNAGC 1 cut(s) 1200
BpuEI CTTGAG 1 cut(s) 160
BpuMI CCSGG 1 cut(s) 238
BsaJI CCNNGG 3 cut(s) 491, 703, 1025
BsaWI WCCGGW 3 cut(s) 151, 550, 1041
BsaXI ACNNNNNCTCC 6 cut(s) 200, 230, 789, 819, 1197, 1227
Bsc4I CCNNNNNNNGG 2 cut(s) 1160, 1227
Bse118I RCCGGY 2 cut(s) 227, 1220
Bse1I ACTGG 8 cut(s) 71, 285, 341, 579, 1066, 1165, 1390, 1402
Bse21I CCTNAGG 1 cut(s) 1509
Bse3DI GCAATG 1 cut(s) 1382
BseBI CCWGG 3 cut(s) 455, 492, 678
BseDI CCNNGG 3 cut(s) 491, 703, 1025
BseGI GGATG 2 cut(s) 116, 1374
BseLI CCNNNNNNNGG 2 cut(s) 1160, 1227
BseMI GCAATG 1 cut(s) 1382
BseMII CTCAG 2 cut(s) 1214, 1523
BseNI ACTGG 8 cut(s) 71, 285, 341, 579, 1066, 1165, 1390, 1402
BseRI GAGGAG 1 cut(s) 581
BseXI GCAGC 2 cut(s) 291, 674
BseYI CCCAGC 1 cut(s) 324
BsgI GTGCAG 2 cut(s) 614, 681
Bsh1285I CGRYCG 1 cut(s) 187
BshFI GGCC 2 cut(s) 231, 1031
BsiEI CGRYCG 1 cut(s) 187
BsiHKCI CYCGRG 3 cut(s) 222, 352, 1024
BsiSI CCGG 6 cut(s) 152, 228, 238, 551, 1042, 1221
BslFI GGGAC 3 cut(s) 107, 1031, 1141
BslI CCNNNNNNNGG 2 cut(s) 1160, 1227
BsmAI GTCTC 1 cut(s) 649
BsmFI GGGAC 3 cut(s) 107, 1031, 1141
BsnI GGCC 2 cut(s) 231, 1031
BsoBI CYCGRG 3 cut(s) 222, 352, 1024
Bsp1286I GDGCHC 1 cut(s) 325
Bsp143I GATC 5 cut(s) 184, 273, 315, 898, 967
BspACI CCGC 3 cut(s) 27, 1409, 1461
BspANI GGCC 2 cut(s) 231, 1031
BspCNI CTCAG 2 cut(s) 1213, 1522
BspLI GGNNCC 4 cut(s) 217, 322, 351, 1479
BspMAI CTGCAG 2 cut(s) 309, 1081
BspOI GCTAGC 1 cut(s) 471
BspPI GGATC 2 cut(s) 281, 962
BsrDI GCAATG 1 cut(s) 1382
BsrFI RCCGGY 2 cut(s) 227, 1220
BsrI ACTGG 8 cut(s) 71, 285, 341, 579, 1066, 1165, 1390, 1402
BssAI RCCGGY 2 cut(s) 227, 1220
BssECI CCNNGG 3 cut(s) 491, 703, 1025
BssMI GATC 5 cut(s) 184, 273, 315, 898, 967
BssT1I CCWWGG 1 cut(s) 703
Bst2UI CCWGG 3 cut(s) 455, 492, 678
Bst4CI ACNGT 7 cut(s) 106, 124, 212, 432, 694, 1298, 1348
BstC8I GCNNGC 4 cut(s) 229, 469, 517, 1265
BstDEI CTNAG 4 cut(s) 291, 1200, 1509, 1561
BstEII GGTNACC 1 cut(s) 620
BstF5I GGATG 2 cut(s) 116, 1374
BstH2I RGCGCY 1 cut(s) 757
BstHHI GCGC 2 cut(s) 756, 1458
BstKTI GATC 5 cut(s) 187, 276, 318, 901, 970
BstMAI GTCTC 1 cut(s) 649
BstMBI GATC 5 cut(s) 184, 273, 315, 898, 967
BstMCI CGRYCG 1 cut(s) 187
BstMWI GCNNNNNNNGC 6 cut(s) 455, 464, 484, 493, 734, 998
BstNI CCWGG 3 cut(s) 455, 492, 678
BstNSI RCATGY 4 cut(s) 519, 793, 1267, 1490
BstPI GGTNACC 1 cut(s) 620
BstSCI CCNGG 4 cut(s) 236, 453, 490, 676
BstSFI CTRYAG 4 cut(s) 305, 1077, 1422, 1585
BstV1I GCAGC 2 cut(s) 291, 674
BstV2I GAAGAC 1 cut(s) 605
BstX2I RGATCY 1 cut(s) 967
BstYI RGATCY 1 cut(s) 967
Bsu36I CCTNAGG 1 cut(s) 1509
BsuI GTATCC 1 cut(s) 1240
BsuRI GGCC 2 cut(s) 231, 1031
BtsCI GGATG 2 cut(s) 116, 1374
BtsIMutI CAGTG 7 cut(s) 78, 111, 129, 428, 690, 1158, 1344
Cac8I GCNNGC 4 cut(s) 229, 469, 517, 1265
CaiI CAGNNNCTG 1 cut(s) 896
CfoI GCGC 2 cut(s) 756, 1458
Cfr10I RCCGGY 2 cut(s) 227, 1220
Cfr13I GGNCC 2 cut(s) 349, 1029
Csp6I GTAC 3 cut(s) 357, 1383, 1395
CviQI GTAC 3 cut(s) 357, 1383, 1395
DdeI CTNAG 4 cut(s) 291, 1200, 1509, 1561
DpnI GATC 5 cut(s) 186, 275, 317, 900, 969
DpnII GATC 5 cut(s) 184, 273, 315, 898, 967
DraI TTTAAA 1 cut(s) 1068
DraIII CACNNNGTG 1 cut(s) 73
EaeI YGGCCR 1 cut(s) 229
Eco130I CCWWGG 1 cut(s) 703
Eco24I GRGCYC 1 cut(s) 325
Eco47I GGWCC 1 cut(s) 349
Eco47III AGCGCT 1 cut(s) 755
Eco57I CTGAAG 3 cut(s) 65, 948, 1107
Eco81I CCTNAGG 1 cut(s) 1509
Eco88I CYCGRG 3 cut(s) 222, 352, 1024
Eco91I GGTNACC 1 cut(s) 620
EcoO65I GGTNACC 1 cut(s) 620
EcoRII CCWGG 3 cut(s) 453, 490, 676
EcoT14I CCWWGG 1 cut(s) 703
EcoT38I GRGCYC 1 cut(s) 325
ErhI CCWWGG 1 cut(s) 703
FalI AAGNNNNNCTT 2 cut(s) 1084, 1116
FaqI GGGAC 3 cut(s) 107, 1031, 1141
FauNDI CATATG 1 cut(s) 763
FblI GTMKAC 1 cut(s) 1425
Fnu4HI GCNGC 2 cut(s) 305, 663
FokI GGATG 2 cut(s) 103, 1381
FriOI GRGCYC 1 cut(s) 325
Fsp4HI GCNGC 2 cut(s) 305, 663
FspBI CTAG 6 cut(s) 468, 785, 983, 1146, 1190, 1307
GlaI GCGC 2 cut(s) 755, 1457
GluI GCNGC 2 cut(s) 305, 663
GsaI CCCAGC 1 cut(s) 328
HaeII RGCGCY 1 cut(s) 757
HaeIII GGCC 2 cut(s) 231, 1031
HapII CCGG 6 cut(s) 152, 228, 238, 551, 1042, 1221
HhaI GCGC 2 cut(s) 756, 1458
Hin6I GCGC 2 cut(s) 754, 1456
HinP1I GCGC 2 cut(s) 754, 1456
HincII GTYRAC 2 cut(s) 1084, 1492
HindII GTYRAC 2 cut(s) 1084, 1492
HindIII AAGCTT 1 cut(s) 1272
HinfI GANTC 1 cut(s) 767
HpaI GTTAAC 1 cut(s) 1084
HpaII CCGG 6 cut(s) 152, 228, 238, 551, 1042, 1221
HphI GGTGA 5 cut(s) 141, 268, 330, 632, 1175
Hpy166II GTNNAC 6 cut(s) 134, 208, 1084, 1344, 1426, 1492
Hpy188I TCNGA 5 cut(s) 45, 320, 898, 967, 1056
Hpy188III TCNNGA 6 cut(s) 139, 530, 938, 1307, 1414, 1468
Hpy8I GTNNAC 6 cut(s) 134, 208, 1084, 1344, 1426, 1492
HpyAV CCTTC 9 cut(s) 388, 393, 401, 436, 548, 572, 636, 972, 1433
HpyCH4III ACNGT 7 cut(s) 106, 124, 212, 432, 694, 1298, 1348
HpyCH4IV ACGT 2 cut(s) 252, 778
HpyCH4V TGCA 9 cut(s) 57, 307, 449, 595, 662, 761, 1079, 1263, 1375
HpyF10VI GCNNNNNNNGC 6 cut(s) 455, 464, 484, 493, 734, 998
HpyF3I CTNAG 4 cut(s) 291, 1200, 1509, 1561
HpySE526I ACGT 2 cut(s) 252, 778
HspAI GCGC 2 cut(s) 754, 1456
KroI GCCGGC 1 cut(s) 227
KroNI GCCGGC 1 cut(s) 229
KspAI GTTAAC 1 cut(s) 1084
Kzo9I GATC 5 cut(s) 184, 273, 315, 898, 967
LmnI GCTCC 6 cut(s) 221, 320, 608, 751, 1044, 1282
Lsp1109I GCAGC 2 cut(s) 291, 674
LweI GCATC 3 cut(s) 250, 480, 1056
MaeI CTAG 6 cut(s) 468, 785, 983, 1146, 1190, 1307
MaeII ACGT 2 cut(s) 252, 778
MaeIII GTNAC 4 cut(s) 3, 336, 426, 620
MalI GATC 5 cut(s) 186, 275, 317, 900, 969
MboI GATC 5 cut(s) 184, 273, 315, 898, 967
MboII GAAGA 3 cut(s) 58, 610, 1220
MflI RGATCY 1 cut(s) 967
MhlI GDGCHC 1 cut(s) 325
MluCI AATT 6 cut(s) 545, 813, 956, 1009, 1258, 1302
MlyI GAGTC 1 cut(s) 761
MmeI TCCRAC 2 cut(s) 386, 822
MroNI GCCGGC 1 cut(s) 227
MroXI GAANNNNTTC 1 cut(s) 1120
MseI TTAA 7 cut(s) 996, 1008, 1067, 1083, 1434, 1593, 1612
MspI CCGG 6 cut(s) 152, 228, 238, 551, 1042, 1221
MspR9I CCNGG 4 cut(s) 238, 455, 492, 678
MvaI CCWGG 3 cut(s) 455, 492, 678
MwoI GCNNNNNNNGC 6 cut(s) 455, 464, 484, 493, 734, 998
NaeI GCCGGC 1 cut(s) 229
NciI CCSGG 1 cut(s) 238
NdeI CATATG 1 cut(s) 763
NdeII GATC 5 cut(s) 184, 273, 315, 898, 967
NgoMIV GCCGGC 1 cut(s) 227
NheI GCTAGC 1 cut(s) 467
NlaIV GGNNCC 4 cut(s) 217, 322, 351, 1479
NmuCI GTSAC 4 cut(s) 3, 336, 426, 620
NspI RCATGY 4 cut(s) 519, 793, 1267, 1490
PaeI GCATGC 2 cut(s) 519, 1267
PciI ACATGT 2 cut(s) 789, 1486
PcsI WCGNNNNNNNCGW 1 cut(s) 480
PdiI GCCGGC 1 cut(s) 229
PdmI GAANNNNTTC 1 cut(s) 1120
PflFI GACNNNGTC 1 cut(s) 692
PflMI CCANNNNNTGG 1 cut(s) 1160
PkrI GCNGC 2 cut(s) 306, 664
Ple19I CGATCG 1 cut(s) 187
PleI GAGTC 1 cut(s) 761
PpsI GAGTC 1 cut(s) 761
PscI ACATGT 2 cut(s) 789, 1486
Psp6I CCWGG 3 cut(s) 453, 490, 676
PspEI GGTNACC 1 cut(s) 620
PspFI CCCAGC 1 cut(s) 324
PspGI CCWGG 3 cut(s) 453, 490, 676
PspN4I GGNNCC 4 cut(s) 217, 322, 351, 1479
PspPI GGNCC 2 cut(s) 349, 1029
PstI CTGCAG 2 cut(s) 309, 1081
PstNI CAGNNNCTG 1 cut(s) 896
PsuI RGATCY 1 cut(s) 967
PsyI GACNNNGTC 1 cut(s) 692
PvuI CGATCG 1 cut(s) 187
RsaI GTAC 3 cut(s) 358, 1384, 1396
RsaNI GTAC 3 cut(s) 357, 1383, 1395
SaqAI TTAA 7 cut(s) 996, 1008, 1067, 1083, 1434, 1593, 1612
SatI GCNGC 2 cut(s) 305, 663
Sau3AI GATC 5 cut(s) 184, 273, 315, 898, 967
Sau96I GGNCC 2 cut(s) 349, 1029
ScaI AGTACT 1 cut(s) 358
SchI GAGTC 1 cut(s) 761
ScrFI CCNGG 4 cut(s) 238, 455, 492, 678
SduI GDGCHC 1 cut(s) 325
SfaNI GCATC 3 cut(s) 250, 480, 1056
SfcI CTRYAG 4 cut(s) 305, 1077, 1422, 1585
SinI GGWCC 1 cut(s) 349
SmlI CTYRAG 1 cut(s) 139
SmoI CTYRAG 1 cut(s) 139
SphI GCATGC 2 cut(s) 519, 1267
Sse9I AATT 6 cut(s) 545, 813, 956, 1009, 1258, 1302
SsiI CCGC 3 cut(s) 27, 1409, 1461
SspMI CTAG 6 cut(s) 468, 785, 983, 1146, 1190, 1307
StyD4I CCNGG 4 cut(s) 236, 453, 490, 676
StyI CCWWGG 1 cut(s) 703
TaaI ACNGT 7 cut(s) 106, 124, 212, 432, 694, 1298, 1348
TaiI ACGT 2 cut(s) 255, 781
TasI AATT 6 cut(s) 545, 813, 956, 1009, 1258, 1302
TatI WGTACW 1 cut(s) 356
Tru1I TTAA 7 cut(s) 996, 1008, 1067, 1083, 1434, 1593, 1612
Tru9I TTAA 7 cut(s) 996, 1008, 1067, 1083, 1434, 1593, 1612
TscAI CASTG 7 cut(s) 78, 111, 129, 435, 697, 1165, 1351
TseFI GTSAC 4 cut(s) 3, 336, 426, 620
TseI GCWGC 2 cut(s) 304, 662
Tsp45I GTSAC 4 cut(s) 3, 336, 426, 620
TspDTI ATGAA 3 cut(s) 437, 1268, 1452
TspGWI ACGGA 1 cut(s) 472
TspRI CASTG 7 cut(s) 78, 111, 129, 435, 697, 1165, 1351
Tth111I GACNNNGTC 1 cut(s) 692
Van91I CCANNNNNTGG 1 cut(s) 1160
VpaK11BI GGWCC 1 cut(s) 349
XapI RAATTY 3 cut(s) 813, 956, 1302
XbaI TCTAGA 1 cut(s) 1306
XceI RCATGY 4 cut(s) 519, 793, 1267, 1490
XmiI GTMKAC 1 cut(s) 1425
XmnI GAANNNNTTC 1 cut(s) 1120
XspI CTAG 6 cut(s) 468, 785, 983, 1146, 1190, 1307
ZrmI AGTACT 1 cut(s) 358
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.