pycom16g15060

Pyruvate phosphate dikinase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
Physical Location & Seq
Reverse (-)
11043790 .. 11045825
2036 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom16g15060.7

Sequence Viewer

Length: 1275 bp
ATGCCAAGAGTATCAGCTCAATGGCAAAGACTTACCTCTAGGTTTGTGGGAGGAGATATTAGAGGGCTTGGAGATTGTGCAAGAGGACATTGGTGCTGTTCTTGGATCGATCCTTCCAAGCCTCTTCTCGTCTCTGTTCGCTCTGGTGCCGCGATTTCCATGCCTGGCATGATGGACACTGTCCTCAACCTTGGGCTCAATGACGAGGTGGTTGCTGGTTTGGCCGCAAAAAGTGGAGAGCGCTTTGCTTATGACTCTTACAGACGGTTCCTGGACATGTTTGGCGATGTTGTTATGGAAATTCCACACTCATCATTCGAGGAGAAATTGGAAAAACTAAAACGTAAAAAAGGAGTTGAGCTTGATACAAAGCTAACAGCTTCTGATCTTAAAGAGCTGGTAGAACAATACAAAAATGTTTATCTCGAAACAACGGGTAAAAAGTTCCCTCCAGATCCAAAACAACAGCTTCTCTTGGCTGTTAAAGCAGTTTTTGATTCTTGGGACAGCCAAAGGGCCATTAAATACCGGAGCATCAATCAGATAACTGGTTTGAAGGGAACCGCGGTTAACATTCAATGCATGGTTTTTGGGAACATGGGAAATACTTCAGGGACAGGTGTTCTGTTCACTAGGAATCCAAGCACCGGTGAAAGGAAGCTTTATGGCGAGTTTCTAGTCAATGCTCAGGGAGAAGATGTAGTTGCCGGGATCAGGACGCCAGAAGACGTGGATGCTATGAAAAATTGCATGCCAGAAGCTTACAAGGAGCTTGTGGAGAACTGTGAAATTCTAGAAAAACATTACAAAGATATGATGGACATCGAGTTTACAGTCCAAGAAAATAGGTTGTGGATGTTGCAATGCCGCGTTGGAAAGCGTACTGGTAAAGGAGCGATTAAGATAGCTGTAGACTTGGCTAATGAGGGGCTCGTGGACAAGCGCACAGCAATCAAGATGGTGGAACCACAGCACCTTGACCAACTTCTTCACCCACAGTTTGAGAATCCAACCGCTTACAAAAACAAAGTCATCGCCACTGGATTGCCTGCATCTCCAGGAGCAGCTGTAGGGACAGTCGTGTTCAGTGCTGAGGATGCCGAAACATGGCAGGCACAAGGAAAGAGTGTCATCTTGGTAAGGACTGAAACTAGCCCCGAAGATGTTGGGGGTATGCATGCAGCTGCAGGGATCGACAGCCAGAGGAGGCATGACATCTCATGCAGCTGTTGTAGCCCGTGGGTGGGGCAAATGTTGTGTTTCTGGCTGCGCTGA

Protein Analysis

425

Amino Acids

47.05

Weight (kDa)

6.68

Isoelectric Point (pI)

37.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 146
AccI GTMKAC 1 cut(s) 912
AccII CGCG 3 cut(s) 152, 566, 870
AciI CCGC 6 cut(s) 150, 225, 564, 566, 868, 1014
AclWI GGATC 5 cut(s) 104, 113, 449, 719, 1199
AcoI YGGCCR 1 cut(s) 222
AcsI RAATTY 2 cut(s) 300, 789
AcuI CTGAAG 1 cut(s) 594
AcyI GRCGYC 1 cut(s) 719
AfaI GTAC 1 cut(s) 883
AfeI AGCGCT 1 cut(s) 242
AfiI CCNNNNNNNGG 6 cut(s) 647, 654, 714, 1107, 1243, 1244
AflIII ACRYGT 1 cut(s) 276
AgeI ACCGGT 1 cut(s) 647
AgsI TTSAA 2 cut(s) 556, 578
AjiI CACGTC 1 cut(s) 730
AjnI CCWGG 3 cut(s) 163, 270, 1057
Alw26I GTCTC 1 cut(s) 136
AlwI GGATC 5 cut(s) 104, 113, 449, 719, 1199
AlwNI CAGNNNCTG 1 cut(s) 383
Aor51HI AGCGCT 1 cut(s) 242
AoxI GGCC 2 cut(s) 222, 516
ApeKI GCWGC 5 cut(s) 1064, 1181, 1184, 1224, 1267
ApoI RAATTY 2 cut(s) 300, 789
ArsI GACNNNNNNTTYG 2 cut(s) 1014, 1046
AsiGI ACCGGT 1 cut(s) 647
Asp700I GAANNNNTTC 1 cut(s) 607
AspLEI GCGC 3 cut(s) 243, 945, 1272
AspS9I GGNCC 1 cut(s) 516
AsuC2I CCSGG 1 cut(s) 709
AsuHPI GGTGA 2 cut(s) 662, 983
BanI GGYRCC 1 cut(s) 146
BanII GRGCYC 2 cut(s) 198, 933
BauI CACGAG 1 cut(s) 932
BbsI GAAGAC 1 cut(s) 732
BbvCI CCTCAGC 1 cut(s) 1092
BbvI GCAGC 5 cut(s) 1076, 1171, 1193, 1236, 1254
BccI CCATC 3 cut(s) 166, 811, 952
BcgI CGANNNNNNTGC 4 cut(s) 142, 176, 194, 228
BciT130I CCWGG 3 cut(s) 165, 272, 1059
BcnI CCSGG 1 cut(s) 709
BcoDI GTCTC 1 cut(s) 136
BfaI CTAG 5 cut(s) 39, 633, 677, 794, 1152
BfmI CTRYAG 3 cut(s) 909, 1068, 1185
BfoI RGCGCY 1 cut(s) 244
BisI GCNGC 8 cut(s) 150, 225, 868, 1065, 1182, 1185, 1225, 1268
BlsI GCNGC 8 cut(s) 151, 226, 869, 1066, 1183, 1186, 1226, 1269
Bme1390I CCNGG 4 cut(s) 165, 272, 709, 1059
BmgBI CACGTC 1 cut(s) 730
BmgT120I GGNCC 1 cut(s) 516
BmiI GGNNCC 4 cut(s) 148, 269, 562, 966
BmrFI CCNGG 4 cut(s) 165, 272, 709, 1059
BmsI GCATC 4 cut(s) 543, 724, 1061, 1087
BpiI GAAGAC 1 cut(s) 732
BpmI CTGGAG 2 cut(s) 435, 1041
Bpu10I CCTNAGC 2 cut(s) 687, 1092
BpuMI CCSGG 1 cut(s) 709
Bsa29I ATCGAT 1 cut(s) 108
BsaBI GATNNNNATC 1 cut(s) 821
BsaHI GRCGYC 1 cut(s) 719
BsaJI CCNNGG 3 cut(s) 190, 564, 1238
BsaWI WCCGGW 2 cut(s) 528, 647
BsaXI ACNNNNNCTCC 4 cut(s) 684, 714, 1053, 1083
Bsc4I CCNNNNNNNGG 6 cut(s) 647, 654, 714, 1107, 1243, 1244
Bse118I RCCGGY 1 cut(s) 647
Bse1I ACTGG 3 cut(s) 553, 889, 1045
Bse3DI GCAATG 1 cut(s) 869
Bse8I GATNNNNATC 1 cut(s) 821
BseBI CCWGG 3 cut(s) 165, 272, 1059
BseCI ATCGAT 1 cut(s) 108
BseDI CCNNGG 3 cut(s) 190, 564, 1238
BseGI GGATG 3 cut(s) 739, 861, 1102
BseJI GATNNNNATC 1 cut(s) 821
BseLI CCNNNNNNNGG 6 cut(s) 647, 654, 714, 1107, 1243, 1244
BseMI GCAATG 1 cut(s) 869
BseMII CTCAG 2 cut(s) 701, 1083
BseNI ACTGG 3 cut(s) 553, 889, 1045
BseRI GAGGAG 3 cut(s) 66, 335, 1219
BseXI GCAGC 5 cut(s) 1076, 1171, 1193, 1236, 1254
Bsh1236I CGCG 3 cut(s) 152, 566, 870
BshFI GGCC 2 cut(s) 224, 518
BshNI GGYRCC 1 cut(s) 146
BshTI ACCGGT 1 cut(s) 647
BshVI ATCGAT 1 cut(s) 108
BsiSI CCGG 3 cut(s) 529, 648, 708
BslFI GGGAC 3 cut(s) 518, 628, 1087
BslI CCNNNNNNNGG 6 cut(s) 647, 654, 714, 1107, 1243, 1244
BsmAI GTCTC 1 cut(s) 136
BsmBI CGTCTC 1 cut(s) 136
BsmFI GGGAC 3 cut(s) 518, 628, 1087
BsnI GGCC 2 cut(s) 224, 518
Bsp1286I GDGCHC 2 cut(s) 198, 933
Bsp143I GATC 6 cut(s) 105, 109, 385, 454, 711, 1191
BspACI CCGC 6 cut(s) 150, 225, 564, 566, 868, 1014
BspANI GGCC 2 cut(s) 224, 518
BspCNI CTCAG 2 cut(s) 700, 1084
BspDI ATCGAT 1 cut(s) 108
BspFNI CGCG 3 cut(s) 152, 566, 870
BspLI GGNNCC 4 cut(s) 148, 269, 562, 966
BspMAI CTGCAG 1 cut(s) 1189
BspPI GGATC 5 cut(s) 104, 113, 449, 719, 1199
BspT107I GGYRCC 1 cut(s) 146
BsrDI GCAATG 1 cut(s) 869
BsrFI RCCGGY 1 cut(s) 647
BsrI ACTGG 3 cut(s) 553, 889, 1045
BssAI RCCGGY 1 cut(s) 647
BssECI CCNNGG 3 cut(s) 190, 564, 1238
BssMI GATC 6 cut(s) 105, 109, 385, 454, 711, 1191
BssNI GRCGYC 1 cut(s) 719
BssSI CACGAG 1 cut(s) 932
BssT1I CCWWGG 1 cut(s) 190
Bst2BI CACGAG 1 cut(s) 932
Bst2UI CCWGG 3 cut(s) 165, 272, 1059
Bst4CI ACNGT 6 cut(s) 181, 267, 785, 835, 999, 1078
Bst6I CTCTTC 1 cut(s) 129
BstACI GRCGYC 1 cut(s) 719
BstC8I GCNNGC 4 cut(s) 752, 1050, 1113, 1179
BstDEI CTNAG 2 cut(s) 687, 1092
BstDSI CCRYGG 2 cut(s) 564, 1238
BstF5I GGATG 3 cut(s) 739, 861, 1102
BstFNI CGCG 3 cut(s) 152, 566, 870
BstH2I RGCGCY 1 cut(s) 244
BstHHI GCGC 3 cut(s) 243, 945, 1272
BstKTI GATC 6 cut(s) 108, 112, 388, 457, 714, 1194
BstMAI GTCTC 1 cut(s) 136
BstMBI GATC 6 cut(s) 105, 109, 385, 454, 711, 1191
BstMWI GCNNNNNNNGC 4 cut(s) 221, 485, 1097, 1233
BstNI CCWGG 3 cut(s) 165, 272, 1059
BstNSI RCATGY 3 cut(s) 280, 754, 1181
BstSCI CCNGG 4 cut(s) 163, 270, 707, 1057
BstSFI CTRYAG 3 cut(s) 909, 1068, 1185
BstUI CGCG 3 cut(s) 152, 566, 870
BstV1I GCAGC 5 cut(s) 1076, 1171, 1193, 1236, 1254
BstV2I GAAGAC 1 cut(s) 732
BstX2I RGATCY 1 cut(s) 454
BstYI RGATCY 1 cut(s) 454
Bsu15I ATCGAT 1 cut(s) 108
BsuRI GGCC 2 cut(s) 224, 518
BsuTUI ATCGAT 1 cut(s) 108
BtgI CCRYGG 2 cut(s) 564, 1238
BtgZI GCGATG 2 cut(s) 300, 1018
BtrI CACGTC 1 cut(s) 730
BtsCI GGATG 3 cut(s) 739, 861, 1102
BtsIMutI CAGTG 3 cut(s) 177, 1038, 1093
Cac8I GCNNGC 4 cut(s) 752, 1050, 1113, 1179
CaiI CAGNNNCTG 1 cut(s) 383
CfoI GCGC 3 cut(s) 243, 945, 1272
Cfr10I RCCGGY 1 cut(s) 647
Cfr13I GGNCC 1 cut(s) 516
Cfr42I CCGCGG 1 cut(s) 567
ClaI ATCGAT 1 cut(s) 108
CseI GACGC 1 cut(s) 727
Csp6I GTAC 1 cut(s) 882
CspAI ACCGGT 1 cut(s) 647
CviQI GTAC 1 cut(s) 882
DdeI CTNAG 2 cut(s) 687, 1092
DpnI GATC 6 cut(s) 107, 111, 387, 456, 713, 1193
DpnII GATC 6 cut(s) 105, 109, 385, 454, 711, 1191
EaeI YGGCCR 1 cut(s) 222
Eam1104I CTCTTC 1 cut(s) 129
EarI CTCTTC 1 cut(s) 129
Eco130I CCWWGG 1 cut(s) 190
Eco24I GRGCYC 2 cut(s) 198, 933
Eco47III AGCGCT 1 cut(s) 242
Eco57I CTGAAG 1 cut(s) 594
EcoRII CCWGG 3 cut(s) 163, 270, 1057
EcoT14I CCWWGG 1 cut(s) 190
EcoT22I ATGCAT 2 cut(s) 584, 1179
EcoT38I GRGCYC 2 cut(s) 198, 933
ErhI CCWWGG 1 cut(s) 190
Esp3I CGTCTC 1 cut(s) 136
FaqI GGGAC 3 cut(s) 518, 628, 1087
FblI GTMKAC 1 cut(s) 912
Fnu4HI GCNGC 8 cut(s) 150, 225, 868, 1065, 1182, 1185, 1225, 1268
FokI GGATG 3 cut(s) 746, 868, 1109
FriOI GRGCYC 2 cut(s) 198, 933
Fsp4HI GCNGC 8 cut(s) 150, 225, 868, 1065, 1182, 1185, 1225, 1268
FspBI CTAG 5 cut(s) 39, 633, 677, 794, 1152
GlaI GCGC 3 cut(s) 242, 944, 1271
GluI GCNGC 8 cut(s) 150, 225, 868, 1065, 1182, 1185, 1225, 1268
GsuI CTGGAG 2 cut(s) 435, 1041
HaeII RGCGCY 1 cut(s) 244
HaeIII GGCC 2 cut(s) 224, 518
HapII CCGG 3 cut(s) 529, 648, 708
HgaI GACGC 1 cut(s) 727
HhaI GCGC 3 cut(s) 243, 945, 1272
Hin1I GRCGYC 1 cut(s) 719
Hin6I GCGC 3 cut(s) 241, 943, 1270
HinP1I GCGC 3 cut(s) 241, 943, 1270
HincII GTYRAC 1 cut(s) 571
HindII GTYRAC 1 cut(s) 571
HindIII AAGCTT 2 cut(s) 659, 759
HinfI GANTC 4 cut(s) 254, 497, 637, 1006
HpaI GTTAAC 1 cut(s) 571
HpaII CCGG 3 cut(s) 529, 648, 708
HphI GGTGA 2 cut(s) 662, 983
Hpy166II GTNNAC 5 cut(s) 571, 630, 831, 913, 937
Hpy188I TCNGA 2 cut(s) 385, 543
Hpy188III TCNNGA 5 cut(s) 425, 452, 715, 794, 955
Hpy8I GTNNAC 5 cut(s) 571, 630, 831, 913, 937
HpyAV CCTTC 2 cut(s) 123, 550
HpyCH4III ACNGT 6 cut(s) 181, 267, 785, 835, 999, 1078
HpyCH4IV ACGT 2 cut(s) 343, 729
HpyCH4V TGCA 9 cut(s) 80, 582, 750, 862, 1052, 1177, 1181, 1187, 1224
HpyF10VI GCNNNNNNNGC 4 cut(s) 221, 485, 1097, 1233
HpyF3I CTNAG 2 cut(s) 687, 1092
HpySE526I ACGT 2 cut(s) 343, 729
Hsp92I GRCGYC 1 cut(s) 719
HspAI GCGC 3 cut(s) 241, 943, 1270
KspAI GTTAAC 1 cut(s) 571
KspI CCGCGG 1 cut(s) 567
Kzo9I GATC 6 cut(s) 105, 109, 385, 454, 711, 1191
LmnI GCTCC 4 cut(s) 531, 769, 893, 1061
Lsp1109I GCAGC 5 cut(s) 1076, 1171, 1193, 1236, 1254
LweI GCATC 4 cut(s) 543, 724, 1061, 1087
MaeI CTAG 5 cut(s) 39, 633, 677, 794, 1152
MaeII ACGT 2 cut(s) 343, 729
MalI GATC 6 cut(s) 107, 111, 387, 456, 713, 1193
MboI GATC 6 cut(s) 105, 109, 385, 454, 711, 1191
MboII GAAGA 5 cut(s) 116, 707, 737, 980, 1172
MflI RGATCY 1 cut(s) 454
MhlI GDGCHC 2 cut(s) 198, 933
MluCI AATT 4 cut(s) 300, 326, 745, 789
MlyI GAGTC 1 cut(s) 248
MmeI TCCRAC 2 cut(s) 853, 1034
Mph1103I ATGCAT 2 cut(s) 584, 1179
MroXI GAANNNNTTC 1 cut(s) 607
MseI TTAA 5 cut(s) 390, 483, 522, 570, 900
MspA1I CMGCKG 4 cut(s) 566, 1067, 1184, 1227
MspI CCGG 3 cut(s) 529, 648, 708
MspR9I CCNGG 4 cut(s) 165, 272, 709, 1059
MvaI CCWGG 3 cut(s) 165, 272, 1059
MvnI CGCG 3 cut(s) 152, 566, 870
MwoI GCNNNNNNNGC 4 cut(s) 221, 485, 1097, 1233
NciI CCSGG 1 cut(s) 709
NdeII GATC 6 cut(s) 105, 109, 385, 454, 711, 1191
NlaIV GGNNCC 4 cut(s) 148, 269, 562, 966
NsiI ATGCAT 2 cut(s) 584, 1179
NspI RCATGY 3 cut(s) 280, 754, 1181
PaeI GCATGC 2 cut(s) 754, 1181
PciI ACATGT 1 cut(s) 276
PdmI GAANNNNTTC 1 cut(s) 607
PfeI GAWTC 3 cut(s) 497, 637, 1006
PflFI GACNNNGTC 1 cut(s) 179
PfoI TCCNGGA 2 cut(s) 270, 1057
PinAI ACCGGT 1 cut(s) 647
PkrI GCNGC 8 cut(s) 151, 226, 869, 1066, 1183, 1186, 1226, 1269
PleI GAGTC 1 cut(s) 248
PpsI GAGTC 1 cut(s) 248
PscI ACATGT 1 cut(s) 276
Psp6I CCWGG 3 cut(s) 163, 270, 1057
PspGI CCWGG 3 cut(s) 163, 270, 1057
PspN4I GGNNCC 4 cut(s) 148, 269, 562, 966
PspPI GGNCC 1 cut(s) 516
PstI CTGCAG 1 cut(s) 1189
PstNI CAGNNNCTG 1 cut(s) 383
PsuI RGATCY 1 cut(s) 454
PsyI GACNNNGTC 1 cut(s) 179
PvuII CAGCTG 3 cut(s) 1067, 1184, 1227
RsaI GTAC 1 cut(s) 883
RsaNI GTAC 1 cut(s) 882
SacII CCGCGG 1 cut(s) 567
SaqAI TTAA 5 cut(s) 390, 483, 522, 570, 900
SatI GCNGC 8 cut(s) 150, 225, 868, 1065, 1182, 1185, 1225, 1268
Sau3AI GATC 6 cut(s) 105, 109, 385, 454, 711, 1191
Sau96I GGNCC 1 cut(s) 516
SchI GAGTC 1 cut(s) 248
ScrFI CCNGG 4 cut(s) 165, 272, 709, 1059
SduI GDGCHC 2 cut(s) 198, 933
SfaNI GCATC 4 cut(s) 543, 724, 1061, 1087
SfcI CTRYAG 3 cut(s) 909, 1068, 1185
Sfr303I CCGCGG 1 cut(s) 567
SgrAI CRCCGGYG 1 cut(s) 647
SgrBI CCGCGG 1 cut(s) 567
SphI GCATGC 2 cut(s) 754, 1181
Sse9I AATT 4 cut(s) 300, 326, 745, 789
SsiI CCGC 6 cut(s) 150, 225, 564, 566, 868, 1014
SspMI CTAG 5 cut(s) 39, 633, 677, 794, 1152
StyD4I CCNGG 4 cut(s) 163, 270, 707, 1057
StyI CCWWGG 1 cut(s) 190
TaaI ACNGT 6 cut(s) 181, 267, 785, 835, 999, 1078
TaiI ACGT 2 cut(s) 346, 732
TaqI TCGA 5 cut(s) 108, 318, 426, 825, 1194
TasI AATT 4 cut(s) 300, 326, 745, 789
TauI GCSGC 3 cut(s) 152, 227, 870
TfiI GAWTC 3 cut(s) 497, 637, 1006
Tru1I TTAA 5 cut(s) 390, 483, 522, 570, 900
Tru9I TTAA 5 cut(s) 390, 483, 522, 570, 900
TscAI CASTG 3 cut(s) 184, 1045, 1093
TseI GCWGC 5 cut(s) 1064, 1181, 1184, 1224, 1267
TspDTI ATGAA 1 cut(s) 755
TspRI CASTG 3 cut(s) 184, 1045, 1093
Tth111I GACNNNGTC 1 cut(s) 179
XapI RAATTY 2 cut(s) 300, 789
XbaI TCTAGA 1 cut(s) 793
XceI RCATGY 3 cut(s) 280, 754, 1181
XmiI GTMKAC 1 cut(s) 912
XmnI GAANNNNTTC 1 cut(s) 607
XspI CTAG 5 cut(s) 39, 633, 677, 794, 1152
Zsp2I ATGCAT 2 cut(s) 584, 1179
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.