Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0008859

Physical Location & Seq

Genomic Coordinates Reverse (-)

11163438 .. 11166721

Gene Structure 3284 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g15320.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2790 bp

ATGGCATCAATGGTGGCCAAGGGCAGTAGTAGTTGCACCACCCAAGTCTCTTCCTCAATAGCTGTTCAAGAAAAGGGAAGTAGGAATAAGAGGAAGTTCCGGGCTGATCCGCCTTTAGGTGACCCGAATAAAATTATTCCTTTATCTCAGACTGAATGCACAAGCTATGAGTTTTCAGCTGAAAAATTCGAAATCAGACAGAGTCATGGACAAATTGGTGTCTGTGACCTGTGCAGTGTTAATCAAGACCATTCTGATGGGTTGAAATTTGACCTTGGATTGTCTAGTGCTGTTGTACCATCCGAGGGTAGCCCAAGCCGGCCCAGAGAGGAACTAGAGGCAGATGAGTTTCAGGATGCCGATTGGAGTGACCTCACAGAAACCCAACTTGAAGGGCTTGTTCTAAGCAATTTGGACATGATTTTCAAAAGTGCAATAAAAAAGATTGTTGCTTGCGGTTACACTGAAGAAGTTGCTGCGAAGGCTGTTTTGCGGTCTGGTCTTTGTTATGGGTGTAAAGACATCGTGTCTAATATAGTGGATAATACTTTAGTTTATCTAAGAAGTGGCCAAGAAATTGATCCTTCGAGGGATCACTGTTTTGAAGATCTACAGCAGCTGGAGAAGTACATATTGGCAGAACTGGTTTGTGTGCTTAGAGAGGTTAGGCCTTTTTTCAGCACTGGTGATGCAATGTGTTGCTTGTTGATTTGTGACATGAATGTATCTCATGCTTGTGCAATGGATGGTGATCCCTTGAATAGTTTCATTAGTGATGGAGCTTCAAATGGAAGTTCCTCCGTCCCGAATCAACCCCAGTCAAAAACAGAAACCAAAAGTTCGGAATTGAATCTTCTGAATCCTTCCAAGCCAGTTCCTTCAGTTCCTGGTTCTCATAGTTCACAGTCTGAGACACCTACGATTGCAGGTGGGGTTTCAAACATGGCTAAACTGAAAAATTCCCTTGTTCGTAGTGGATCGTTGTCTGAGAAAGAGGGTGCACAGTACACATCTGAGAATGGGGATAAATCTTTTGGTGCATCTGGAACATTTCAATCTCCTGTGGTAGAGGAAAAGCTTTTAAGTAGTCGAAAGGTTCATTCTGTTACCACCAAGAGAGAATACATGCTTCGGCACAAGTCACTACACTTGGAAAAAAGTTACCGGACTTATGGATGTAAAGGGTCTTCAAGAACAGGGAAGCTGAGTGGTTTGGGTGGTTTAATCTTGGATAAGAAACTAAAATCTGTGTCAGACTCTACCGCTGTTAATTTGAAGAATGCTTCCTTGAAGATAAGCAAGGCTATGGGAGTTGATGTGCCTCAAGAAAGTGGAAACAATAATCTTTCTGCCAATGCCGGGCCGTCTTCCCCTAGAGCATTTAACCTGGATGTTGAAAATACTGCTTCTGTTTTGCCTAAGAACAGTGTCCCGTCCATGTTACCTGCTGTTTGTGAAACGGCATTACCTGCTGTCGGTACTTCGACTGCATTACCTTCTGTCAATACTTCAACGGCATTACCTGTAGTCAATACTGCAGCTGCATTACCTTCAGCAAATACTACGCCTGCATTATCAGTTGCTGATACTGAGCTTTCCCTTTCTCTGCATCCAAAAAGCATTTCCAATCCAGTTCCTATTAGCTGTCACTCTGATGCAACTAATTCTGTTTTTGCTGGGATACCGTATGATAAATCCTTGGGGCAGTGGGTCCCCCGGGACAAGAAAGATGAAATGATTTTAAAGTTGGTTCCGAGGGCACGGGACTTGCAAAATCAGCTCCAAGAGTGGACAGAGTGGGCAAATCAGAAGGTTATGCAGGCTGCGCGTAGATTGAGCAAGGACAAGGCTGAACTTAAGTCATTGAGGCAAGAGAAAGAAGAAGTTGAGCGGCTGAAGAAAGAGAAGCAAACGCTGGAAGAAAACACCATGAAGAAGCTTTCTGAGATGGAAAATGCTCTCTGCAAGGCTAGTAGCCAGGTTGAACGGGCAAATTCTTCCGTCCGGAGGCTTGAGGTGGAGAATGCTGCCTTGAGGCAGGATATGGAGGCTGCTAAAGTACGTGCTGCAGAATCTGCTGCAAGCTGTCAGGAGGTATCTAAAAGGGAGAAGAAGACACTGATGAAGTTTCAGTCATGGGAGAAGCAGAAAACCATGTTCAGTGAAGAACTTGCGACTGAAAAACGCAAGTTAAAACAGCTGCTACAGGAACTAGAACAAGCAAAAGATCTCCAGGAACAATTGGAGGCTAGATGGCAACAGGAAGAAAAATCAAAGGCAGAAGTACTTGAGCAGGTCAGTTCGATAAAAAAAGAACGGGAACAGATAGAGGCTTCAACAAAATCCAAGGAGGATATGATTAAACTGAAAGCAGAAAACAATCTGCAGAAGTACAAAGATGATATTCAGAAACTCGAAAAAGAAATCTCTCAATTGAGACACAAGAGTGATTCTTCAAAAATTGCTGCGCTGCGGAGGGGCATTGATGGGAGCTACGCCAGCAAAGTAACAGACATCGAAAATGGCCTGGATCACAAGGGGTCCCGGATGCCATACATCTCGGAAGTAGTGAAGGATATTCAAGACTACTCTGAGACAGGAGGGGTGAAACGTGAACGGGAGTGTGTGATGTGCCTCTCTGAGGAGATGTCCGTTGTCTTCCTCCCGTGTGCCCATCAAGTGGTTTGTAGAACATGCAATGAGCTCCACGAGAAACAGGGCATGAAGGATTGCCCGTCTTGTAGGAGCGCGATACAGTGGCGAATTTCTGTACGTTATGCTCGTTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4_3

Protein Analysis

930

Amino Acids

102.27

Weight (kDa)

7.15

Isoelectric Point (pI)

52.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PIR2-like_helical	PF20235	137 - 249	2.8e-30	PIR2-like, helical domain
zf-C3HC4_3	PF13920	872 - 919	1.7e-11	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008859)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g16660 FvH4_4g16660 FvH4_4g16660 FvH4_4g16660
malus_domestica	MD13G1177600.v1.1 MD16G1179600.v1.1
prunus_persica	Prupe.1G146600_v2.0.a1 Prupe.1G146600_v2.0.a1 Prupe.1G146600_v2.0.a1 Prupe.1G146600_v2.0.a1
pyrus_communis	pycom13g15320
rosa_chinensis	RchiOBHm_Chr4g0420121
rosa_laevigata	RLG00000007787
rosa_multiflora	Rmu_sc0015433.1_g000001 Rmu_sc0023895.1_g000001
rosa_roxburghii	Rroxscaffold_5G00362830
rosa_rugosa	Rorug04G0162300 Rorug04G0162400
rosa_samantha	Rh4AG223200 Rh4BG225600 Rh4CG236400 Rh4DG222000
rosa_wichuraiana	Rw4G019210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	917
Acc36I	ACCTGC	4 cut(s)	917, 1453, 1477, 2284
AccB7I	CCANNNNNTGG	1 cut(s)	2680
AccBSI	CCGCTC	1 cut(s)	1891
AccII	CGCG	2 cut(s)	1828, 2750
AccIII	TCCGGA	1 cut(s)	2004
AciI	CCGC	6 cut(s)	110, 456, 493, 1263, 1891, 2473
AclWI	GGATC	6 cut(s)	101, 575, 600, 746, 985, 2538
AcoI	YGGCCR	2 cut(s)	15, 568
AcsI	RAATTY	5 cut(s)	185, 266, 958, 1993, 2763
AcuI	CTGAAG	4 cut(s)	486, 864, 1536, 1916
AfaI	GTAC	8 cut(s)	297, 629, 1007, 1480, 2061, 2286, 2393, 2772
AfiI	CCNNNNNNNGG	7 cut(s)	116, 305, 1359, 1475, 2007, 2641, 2680
AflII	CTTAAG	1 cut(s)	1856
AhdI	GACNNNNNGTC	1 cut(s)	526
AjnI	CCWGG	5 cut(s)	886, 1386, 1977, 2232, 2526
AjuI	GAANNNNNNNTTGG	4 cut(s)	617, 649, 1606, 1638
AleI	CACNNNNGTG	1 cut(s)	2445
Alw21I	GWGCWC	2 cut(s)	1003, 2706
Alw26I	GTCTC	4 cut(s)	52, 905, 2431, 2588
Alw44I	GTGCAC	1 cut(s)	999
AlwI	GGATC	6 cut(s)	101, 575, 600, 746, 985, 2538
AlwNI	CAGNNNCTG	4 cut(s)	619, 887, 1583, 2075
Ama87I	CYCGRG	1 cut(s)	1716
Aor13HI	TCCGGA	1 cut(s)	2004
AoxI	GGCC	6 cut(s)	15, 320, 568, 668, 1361, 2524
ApaLI	GTGCAC	1 cut(s)	999
ApoI	RAATTY	5 cut(s)	185, 266, 958, 1993, 2763
Asp700I	GAANNNNTTC	1 cut(s)	764
AspLEI	GCGC	3 cut(s)	1828, 2470, 2750
AspS9I	GGNCC	4 cut(s)	321, 1361, 1711, 2541
AsuC2I	CCSGG	5 cut(s)	101, 1360, 1717, 1718, 2545
AsuHPI	GGTGA	4 cut(s)	131, 698, 761, 2617
AsuII	TTCGAA	1 cut(s)	189
AvaI	CYCGRG	1 cut(s)	1716
AvaII	GGWCC	2 cut(s)	1711, 2541
BaeGI	GKGCMC	3 cut(s)	1003, 1762, 2674
BalI	TGGCCA	2 cut(s)	17, 570
BanII	GRGCYC	1 cut(s)	2706
BarI	GAAGNNNNNNTAC	2 cut(s)	1171, 1203
BauI	CACGAG	1 cut(s)	2708
BbsI	GAAGAC	4 cut(s)	1179, 1359, 2120, 2650
Bbv12I	GWGCWC	2 cut(s)	1003, 2706
BccI	CCATC	8 cut(s)	251, 307, 740, 770, 1942, 2247, 2480, 2682
BceAI	ACGGC	3 cut(s)	1348, 1476, 1530
BciT130I	CCWGG	5 cut(s)	888, 1388, 1979, 2234, 2528
BciVI	GTATCC	1 cut(s)	1674
BcnI	CCSGG	5 cut(s)	101, 1360, 1717, 1718, 2545
BcoDI	GTCTC	4 cut(s)	52, 905, 2431, 2588
BfaI	CTAG	6 cut(s)	285, 335, 1374, 1971, 2213, 2250
BfmI	CTRYAG	6 cut(s)	611, 1524, 1536, 2067, 2204, 2384
BfrI	CTTAAG	1 cut(s)	1856
BfuAI	ACCTGC	4 cut(s)	917, 1453, 1477, 2284
BfuI	GTATCC	1 cut(s)	1674
BglII	AGATCT	2 cut(s)	607, 2227
BmcAI	AGTACT	1 cut(s)	2286
Bme18I	GGWCC	2 cut(s)	1711, 2541
BmeRI	GACNNNNNGTC	1 cut(s)	526
BmeT110I	CYCGRG	1 cut(s)	1716
BmgT120I	GGNCC	4 cut(s)	321, 1361, 1711, 2541
BmiI	GGNNCC	5 cut(s)	1712, 1713, 1752, 2542, 2543
BmrI	ACTGGG	1 cut(s)	811
BmsI	GCATC	7 cut(s)	14, 346, 679, 1049, 1618, 1645, 2538
BmuI	ACTGGG	1 cut(s)	811
BpiI	GAAGAC	4 cut(s)	1179, 1359, 2120, 2650
BpmI	CTGGAG	2 cut(s)	641, 2216
Bpu14I	TTCGAA	1 cut(s)	189
BpuEI	CTTGAG	4 cut(s)	1308, 2033, 2053, 2309
BpuMI	CCSGG	5 cut(s)	101, 1360, 1717, 1718, 2545
BsaAI	YACGTR	1 cut(s)	2063
BsaBI	GATNNNNATC	1 cut(s)	750
BsaJI	CCNNGG	8 cut(s)	18, 274, 303, 1698, 1715, 1716, 1754, 2346
BsaWI	WCCGGW	2 cut(s)	1164, 2004
BsaXI	ACNNNNNCTCC	2 cut(s)	1302, 1332
Bsc4I	CCNNNNNNNGG	7 cut(s)	116, 305, 1359, 1475, 2007, 2641, 2680
Bse118I	RCCGGY	1 cut(s)	318
Bse1I	ACTGG	5 cut(s)	648, 688, 817, 872, 1631
Bse3DI	GCAATG	3 cut(s)	699, 747, 2704
Bse8I	GATNNNNATC	1 cut(s)	750
BseAI	TCCGGA	1 cut(s)	2004
BseBI	CCWGG	5 cut(s)	888, 1388, 1979, 2234, 2528
BseDI	CCNNGG	8 cut(s)	18, 274, 303, 1698, 1715, 1716, 1754, 2346
BseGI	GGATG	7 cut(s)	299, 361, 751, 1181, 1396, 1609, 2553
BseJI	GATNNNNATC	1 cut(s)	750
BseLI	CCNNNNNNNGG	7 cut(s)	116, 305, 1359, 1475, 2007, 2641, 2680
BseMI	GCAATG	3 cut(s)	699, 747, 2704
BseMII	CTCAG	9 cut(s)	161, 900, 978, 1005, 1196, 1581, 1935, 2583, 2631
BseNI	ACTGG	5 cut(s)	648, 688, 817, 872, 1631
BseRI	GAGGAG	1 cut(s)	2657
BseSI	GKGCMC	3 cut(s)	1003, 1762, 2674
BseYI	CCCAGC	1 cut(s)	1676
BsgI	GTGCAG	1 cut(s)	253
Bsh1236I	CGCG	2 cut(s)	1828, 2750
BshFI	GGCC	6 cut(s)	17, 322, 570, 670, 1363, 2526
BsiHKAI	GWGCWC	2 cut(s)	1003, 2706
BsiHKCI	CYCGRG	1 cut(s)	1716
BsiSI	CCGG	7 cut(s)	100, 319, 1165, 1359, 1717, 2005, 2545
BslFI	GGGAC	6 cut(s)	788, 1415, 1697, 1733, 1778, 2527
BslI	CCNNNNNNNGG	7 cut(s)	116, 305, 1359, 1475, 2007, 2641, 2680
BsmAI	GTCTC	4 cut(s)	52, 905, 2431, 2588
BsmFI	GGGAC	6 cut(s)	788, 1415, 1697, 1733, 1778, 2527
BsmI	GAATGC	3 cut(s)	161, 1285, 2029
BsnI	GGCC	6 cut(s)	17, 322, 570, 670, 1363, 2526
BsoBI	CYCGRG	1 cut(s)	1716
Bsp119I	TTCGAA	1 cut(s)	189
Bsp1286I	GDGCHC	4 cut(s)	1003, 1762, 2674, 2706
Bsp13I	TCCGGA	1 cut(s)	2004
Bsp143I	GATC	8 cut(s)	106, 580, 592, 607, 751, 977, 2227, 2530
BspACI	CCGC	6 cut(s)	110, 456, 493, 1263, 1891, 2473
BspANI	GGCC	6 cut(s)	17, 322, 570, 670, 1363, 2526
BspCNI	CTCAG	9 cut(s)	160, 901, 979, 1006, 1197, 1582, 1936, 2584, 2632
BspEI	TCCGGA	1 cut(s)	2004
BspFNI	CGCG	2 cut(s)	1828, 2750
BspLI	GGNNCC	5 cut(s)	1712, 1713, 1752, 2542, 2543
BspMAI	CTGCAG	3 cut(s)	1540, 2071, 2388
BspMI	ACCTGC	4 cut(s)	917, 1453, 1477, 2284
BspPI	GGATC	6 cut(s)	101, 575, 600, 746, 985, 2538
BspT104I	TTCGAA	1 cut(s)	189
BspTI	CTTAAG	1 cut(s)	1856
BsrBI	CCGCTC	1 cut(s)	1891
BsrDI	GCAATG	3 cut(s)	699, 747, 2704
BsrFI	RCCGGY	1 cut(s)	318
BsrI	ACTGG	5 cut(s)	648, 688, 817, 872, 1631
BssAI	RCCGGY	1 cut(s)	318
BssECI	CCNNGG	8 cut(s)	18, 274, 303, 1698, 1715, 1716, 1754, 2346
BssMI	GATC	8 cut(s)	106, 580, 592, 607, 751, 977, 2227, 2530
BssSI	CACGAG	1 cut(s)	2708
BssT1I	CCWWGG	4 cut(s)	18, 274, 1698, 2346
Bst2BI	CACGAG	1 cut(s)	2708
Bst2UI	CCWGG	5 cut(s)	888, 1388, 1979, 2234, 2528
Bst4CI	ACNGT	6 cut(s)	599, 906, 1005, 1427, 1686, 2757
Bst6I	CTCTTC	1 cut(s)	55
BstAFI	CTTAAG	1 cut(s)	1856
BstAPI	GCANNNNNTGC	2 cut(s)	1469, 2075
BstBAI	YACGTR	1 cut(s)	2063
BstBI	TTCGAA	1 cut(s)	189
BstC8I	GCNNGC	6 cut(s)	320, 454, 1569, 1821, 2083, 2500
BstEII	GGTNACC	1 cut(s)	119
BstENI	CCTNNNNNAGG	1 cut(s)	2639
BstF5I	GGATG	7 cut(s)	299, 361, 751, 1181, 1396, 1609, 2553
BstFNI	CGCG	2 cut(s)	1828, 2750
BstHHI	GCGC	3 cut(s)	1828, 2470, 2750
BstKTI	GATC	8 cut(s)	109, 583, 595, 610, 754, 980, 2230, 2533
BstMAI	GTCTC	4 cut(s)	52, 905, 2431, 2588
BstMBI	GATC	8 cut(s)	106, 580, 592, 607, 751, 977, 2227, 2530
BstMWI	GCNNNNNNNGC	6 cut(s)	482, 1469, 1777, 1825, 2075, 2499
BstNI	CCWGG	5 cut(s)	888, 1388, 1979, 2234, 2528
BstNSI	RCATGY	2 cut(s)	1129, 2697
BstPI	GGTNACC	1 cut(s)	119
BstSFI	CTRYAG	6 cut(s)	611, 1524, 1536, 2067, 2204, 2384
BstSLI	GKGCMC	3 cut(s)	1003, 1762, 2674
BstUI	CGCG	2 cut(s)	1828, 2750
BstV2I	GAAGAC	4 cut(s)	1179, 1359, 2120, 2650
BstX2I	RGATCY	2 cut(s)	607, 2227
BstXI	CCANNNNNNTGG	1 cut(s)	257
BstYI	RGATCY	2 cut(s)	607, 2227
BsuI	GTATCC	1 cut(s)	1674
BsuRI	GGCC	6 cut(s)	17, 322, 570, 670, 1363, 2526
BtsCI	GGATG	7 cut(s)	299, 361, 751, 1181, 1396, 1609, 2553
BtsI	GCAGTG	2 cut(s)	241, 1712
BtsIMutI	CAGTG	9 cut(s)	241, 462, 595, 681, 1432, 1712, 2117, 2167, 2762
BveI	ACCTGC	4 cut(s)	917, 1453, 1477, 2284
Cac8I	GCNNGC	6 cut(s)	320, 454, 1569, 1821, 2083, 2500
CaiI	CAGNNNCTG	4 cut(s)	619, 887, 1583, 2075
CfoI	GCGC	3 cut(s)	1828, 2470, 2750
Cfr10I	RCCGGY	1 cut(s)	318
Cfr13I	GGNCC	4 cut(s)	321, 1361, 1711, 2541
Cfr9I	CCCGGG	1 cut(s)	1716
Csp6I	GTAC	8 cut(s)	296, 628, 1006, 1479, 2060, 2285, 2392, 2771
CviQI	GTAC	8 cut(s)	296, 628, 1006, 1479, 2060, 2285, 2392, 2771
DpnI	GATC	8 cut(s)	108, 582, 594, 609, 753, 979, 2229, 2532
DpnII	GATC	8 cut(s)	106, 580, 592, 607, 751, 977, 2227, 2530
DraI	TTTAAA	1 cut(s)	1743
DriI	GACNNNNNGTC	1 cut(s)	526
EaeI	YGGCCR	2 cut(s)	15, 568
Eam1104I	CTCTTC	1 cut(s)	55
Eam1105I	GACNNNNNGTC	1 cut(s)	526
EarI	CTCTTC	1 cut(s)	55
EciI	GGCGGA	1 cut(s)	99
Ecl136II	GAGCTC	1 cut(s)	2704
Eco130I	CCWWGG	4 cut(s)	18, 274, 1698, 2346
Eco147I	AGGCCT	1 cut(s)	670
Eco24I	GRGCYC	1 cut(s)	2706
Eco47I	GGWCC	2 cut(s)	1711, 2541
Eco53kI	GAGCTC	1 cut(s)	2704
Eco57I	CTGAAG	4 cut(s)	486, 864, 1536, 1916
Eco88I	CYCGRG	1 cut(s)	1716
Eco91I	GGTNACC	1 cut(s)	119
EcoICRI	GAGCTC	1 cut(s)	2704
EcoNI	CCTNNNNNAGG	1 cut(s)	2639
EcoO109I	RGGNCCY	2 cut(s)	1711, 2541
EcoO65I	GGTNACC	1 cut(s)	119
EcoRII	CCWGG	5 cut(s)	886, 1386, 1977, 2232, 2526
EcoT14I	CCWWGG	4 cut(s)	18, 274, 1698, 2346
EcoT38I	GRGCYC	1 cut(s)	2706
ErhI	CCWWGG	4 cut(s)	18, 274, 1698, 2346
FaqI	GGGAC	6 cut(s)	788, 1415, 1697, 1733, 1778, 2527
FokI	GGATG	7 cut(s)	286, 368, 758, 1188, 1403, 1596, 2560
FriOI	GRGCYC	1 cut(s)	2706
FspBI	CTAG	6 cut(s)	285, 335, 1374, 1971, 2213, 2250
GlaI	GCGC	3 cut(s)	1827, 2469, 2749
GsaI	CCCAGC	1 cut(s)	1680
GsuI	CTGGAG	2 cut(s)	641, 2216
HaeIII	GGCC	6 cut(s)	17, 322, 570, 670, 1363, 2526
HapII	CCGG	7 cut(s)	100, 319, 1165, 1359, 1717, 2005, 2545
HhaI	GCGC	3 cut(s)	1828, 2470, 2750
Hin6I	GCGC	3 cut(s)	1826, 2468, 2748
HinP1I	GCGC	3 cut(s)	1826, 2468, 2748
HindIII	AAGCTT	2 cut(s)	1076, 1937
HinfI	GANTC	7 cut(s)	202, 808, 850, 859, 1256, 2072, 2450
HpaII	CCGG	7 cut(s)	100, 319, 1165, 1359, 1717, 2005, 2545
HphI	GGTGA	4 cut(s)	131, 698, 761, 2617
Hpy166II	GTNNAC	5 cut(s)	902, 1001, 1008, 1791, 2615
Hpy8I	GTNNAC	5 cut(s)	902, 1001, 1008, 1791, 2615
HpyCH4III	ACNGT	6 cut(s)	599, 906, 1005, 1427, 1686, 2757
HpyCH4IV	ACGT	3 cut(s)	2062, 2611, 2773
HpyF10VI	GCNNNNNNNGC	6 cut(s)	482, 1469, 1777, 1825, 2075, 2499
HpySE526I	ACGT	3 cut(s)	2062, 2611, 2773
HspAI	GCGC	3 cut(s)	1826, 2468, 2748
KflI	GGGWCCC	2 cut(s)	1711, 2541
Kpn2I	TCCGGA	1 cut(s)	2004
KroI	GCCGGC	1 cut(s)	318
KroNI	GCCGGC	1 cut(s)	320
Kzo9I	GATC	8 cut(s)	106, 580, 592, 607, 751, 977, 2227, 2530
LmnI	GCTCC	5 cut(s)	779, 1785, 2490, 2709, 2745
LweI	GCATC	7 cut(s)	14, 346, 679, 1049, 1618, 1645, 2538
MaeI	CTAG	6 cut(s)	285, 335, 1374, 1971, 2213, 2250
MaeII	ACGT	3 cut(s)	2062, 2611, 2773
MalI	GATC	8 cut(s)	108, 582, 594, 609, 753, 979, 2229, 2532
MbiI	CCGCTC	1 cut(s)	1891
MboI	GATC	8 cut(s)	106, 580, 592, 607, 751, 977, 2227, 2530
MfeI	CAATTG	2 cut(s)	2240, 2432
MflI	RGATCY	2 cut(s)	607, 2227
MhlI	GDGCHC	4 cut(s)	1003, 1762, 2674, 2706
MlsI	TGGCCA	2 cut(s)	17, 570
MluNI	TGGCCA	2 cut(s)	17, 570
MlyI	GAGTC	2 cut(s)	211, 1250
Mox20I	TGGCCA	2 cut(s)	17, 570
MroI	TCCGGA	1 cut(s)	2004
MroNI	GCCGGC	1 cut(s)	318
MroXI	GAANNNNTTC	1 cut(s)	764
MscI	TGGCCA	2 cut(s)	17, 570
MslI	CAYNNNNRTG	4 cut(s)	255, 735, 1653, 2445
Msp20I	TGGCCA	2 cut(s)	17, 570
MspA1I	CMGCKG	5 cut(s)	179, 619, 1265, 1541, 2200
MspCI	CTTAAG	1 cut(s)	1856
MspI	CCGG	7 cut(s)	100, 319, 1165, 1359, 1717, 2005, 2545
MunI	CAATTG	2 cut(s)	2240, 2432
Mva1269I	GAATGC	3 cut(s)	161, 1285, 2029
MvaI	CCWGG	5 cut(s)	888, 1388, 1979, 2234, 2528
MvnI	CGCG	2 cut(s)	1828, 2750
MwoI	GCNNNNNNNGC	6 cut(s)	482, 1469, 1777, 1825, 2075, 2499
NaeI	GCCGGC	1 cut(s)	320
NciI	CCSGG	5 cut(s)	101, 1360, 1717, 1718, 2545
NdeII	GATC	8 cut(s)	106, 580, 592, 607, 751, 977, 2227, 2530
NgoMIV	GCCGGC	1 cut(s)	318
NlaIV	GGNNCC	5 cut(s)	1712, 1713, 1752, 2542, 2543
NmuCI	GTSAC	6 cut(s)	119, 224, 368, 713, 1140, 1646
NspI	RCATGY	2 cut(s)	1129, 2697
NspV	TTCGAA	1 cut(s)	189
OliI	CACNNNNGTG	1 cut(s)	2445
PaqCI	CACCTGC	1 cut(s)	917
PceI	AGGCCT	1 cut(s)	670
PcsI	WCGNNNNNNNCGW	1 cut(s)	2779
PctI	GAATGC	3 cut(s)	161, 1285, 2029
PdiI	GCCGGC	1 cut(s)	320
PdmI	GAANNNNTTC	1 cut(s)	764
PfeI	GAWTC	5 cut(s)	808, 850, 859, 2072, 2450
PflFI	GACNNNGTC	1 cut(s)	201
PflMI	CCANNNNNTGG	1 cut(s)	2680
PfoI	TCCNGGA	2 cut(s)	2232, 2543
PleI	GAGTC	2 cut(s)	210, 1250
PpsI	GAGTC	2 cut(s)	210, 1250
Ppu21I	YACGTR	1 cut(s)	2063
PpuMI	RGGWCCY	2 cut(s)	1711, 2541
Psp124BI	GAGCTC	1 cut(s)	2706
Psp5II	RGGWCCY	2 cut(s)	1711, 2541
Psp6I	CCWGG	5 cut(s)	886, 1386, 1977, 2232, 2526
PspEI	GGTNACC	1 cut(s)	119
PspFI	CCCAGC	1 cut(s)	1676
PspGI	CCWGG	5 cut(s)	886, 1386, 1977, 2232, 2526
PspN4I	GGNNCC	5 cut(s)	1712, 1713, 1752, 2542, 2543
PspPI	GGNCC	4 cut(s)	321, 1361, 1711, 2541
PspPPI	RGGWCCY	2 cut(s)	1711, 2541
PstI	CTGCAG	3 cut(s)	1540, 2071, 2388
PstNI	CAGNNNCTG	4 cut(s)	619, 887, 1583, 2075
PsuI	RGATCY	2 cut(s)	607, 2227
PsyI	GACNNNGTC	1 cut(s)	201
PvuII	CAGCTG	4 cut(s)	179, 619, 1541, 2200
RsaI	GTAC	8 cut(s)	297, 629, 1007, 1480, 2061, 2286, 2393, 2772
RsaNI	GTAC	8 cut(s)	296, 628, 1006, 1479, 2060, 2285, 2392, 2771
RseI	CAYNNNNRTG	4 cut(s)	255, 735, 1653, 2445
SacI	GAGCTC	1 cut(s)	2706
Sau3AI	GATC	8 cut(s)	106, 580, 592, 607, 751, 977, 2227, 2530
Sau96I	GGNCC	4 cut(s)	321, 1361, 1711, 2541
ScaI	AGTACT	1 cut(s)	2286
SchI	GAGTC	2 cut(s)	211, 1250
SduI	GDGCHC	4 cut(s)	1003, 1762, 2674, 2706
SfaNI	GCATC	7 cut(s)	14, 346, 679, 1049, 1618, 1645, 2538
SfcI	CTRYAG	6 cut(s)	611, 1524, 1536, 2067, 2204, 2384
SfuI	TTCGAA	1 cut(s)	189
SinI	GGWCC	2 cut(s)	1711, 2541
SmaI	CCCGGG	1 cut(s)	1718
SmiMI	CAYNNNNRTG	4 cut(s)	255, 735, 1653, 2445
SmlI	CTYRAG	5 cut(s)	1323, 1856, 2012, 2032, 2288
SmoI	CTYRAG	5 cut(s)	1323, 1856, 2012, 2032, 2288
SseBI	AGGCCT	1 cut(s)	670
SsiI	CCGC	6 cut(s)	110, 456, 493, 1263, 1891, 2473
SspMI	CTAG	6 cut(s)	285, 335, 1374, 1971, 2213, 2250
SstI	GAGCTC	1 cut(s)	2706
StuI	AGGCCT	1 cut(s)	670
StyI	CCWWGG	4 cut(s)	18, 274, 1698, 2346
TaaI	ACNGT	6 cut(s)	599, 906, 1005, 1427, 1686, 2757
TaiI	ACGT	3 cut(s)	2065, 2614, 2776
TaqI	TCGA	7 cut(s)	189, 587, 1090, 1484, 2303, 2415, 2517
TatI	WGTACW	4 cut(s)	627, 1005, 2284, 2391
TauI	GCSGC	1 cut(s)	1894
TfiI	GAWTC	5 cut(s)	808, 850, 859, 2072, 2450
TscAI	CASTG	9 cut(s)	241, 469, 602, 688, 1432, 1712, 2124, 2167, 2762
TseFI	GTSAC	6 cut(s)	119, 224, 368, 713, 1140, 1646
Tsp45I	GTSAC	6 cut(s)	119, 224, 368, 713, 1140, 1646
TspDTI	ATGAA	7 cut(s)	734, 757, 1088, 1746, 1946, 2138, 2738
TspGWI	ACGGA	3 cut(s)	790, 1990, 2641
TspMI	CCCGGG	1 cut(s)	1716
TspRI	CASTG	9 cut(s)	241, 469, 602, 688, 1432, 1712, 2124, 2167, 2762
Tth111I	GACNNNGTC	1 cut(s)	201
Van91I	CCANNNNNTGG	1 cut(s)	2680
Vha464I	CTTAAG	1 cut(s)	1856
VneI	GTGCAC	1 cut(s)	999
VpaK11BI	GGWCC	2 cut(s)	1711, 2541
XagI	CCTNNNNNAGG	1 cut(s)	2639
XapI	RAATTY	5 cut(s)	185, 266, 958, 1993, 2763
XceI	RCATGY	2 cut(s)	1129, 2697
XmaI	CCCGGG	1 cut(s)	1716
XmnI	GAANNNNTTC	1 cut(s)	764
XspI	CTAG	6 cut(s)	285, 335, 1374, 1971, 2213, 2250
ZrmI	AGTACT	1 cut(s)	2286

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.