Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0008859

Physical Location & Seq

Genomic Coordinates Reverse (-)

28263805 .. 28266528

Gene Structure 2724 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0162300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGGGTTCTTCGTACTGGGGAAAAGATAGAAGAAAAATGGGTTTCAATCTAGACATCGAAATACCGAAGTTGAAACTAGGGTTCCATTTGTGGGTTCTTCGATTTGGGGATTTGGGGGTTTCTCGGCGATTCTTGAAAGAATCTTACTTTGTTCTATGCCCAGCTAGTTTGCCTTATTTGCAGAGAATCTGCAGCAGACCATCTTCTCCAACCATTCCAAGGCCTCTGCATCACTACTTTCAACAATTGGTAATTGCAATTCAAATCCTCTTAGTATTGTCGTTGCTGTTCTCCCCCGCAGTTCCCGCCAAGTCCCGTCGCTCAATCTCTGTATGTATTCCAAATGCCTCCATCTCTTTTCGGAAAGAAATTGCAGGAAATAGGGTTAGGCTAGCAACTCATGCAAATTTCAAAGATTTTGTCCTTACTGTTGGGTTGGAGTTCTTTCCTTTAGGTGGAGATCCAAAGTTCTTGCCGAATGTAAGCCTACCAGTGAATTCCCTCATCCTCTATCCCGTGTCAAGCAACATATTGGATATAGACTATCATATCAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4_3

Protein Analysis

185

Amino Acids

20.97

Weight (kDa)

10.01

Isoelectric Point (pI)

63.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008859)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g16660 FvH4_4g16660 FvH4_4g16660 FvH4_4g16660
malus_domestica	MD13G1177600.v1.1 MD16G1179600.v1.1
prunus_persica	Prupe.1G146600_v2.0.a1 Prupe.1G146600_v2.0.a1 Prupe.1G146600_v2.0.a1 Prupe.1G146600_v2.0.a1
pyrus_communis	pycom13g15320
rosa_chinensis	RchiOBHm_Chr4g0420121
rosa_laevigata	RLG00000007787
rosa_multiflora	Rmu_sc0015433.1_g000001 Rmu_sc0023895.1_g000001
rosa_roxburghii	Rroxscaffold_5G00362830
rosa_rugosa	Rorug04G0162300 Rorug04G0162400
rosa_samantha	Rh4AG223200 Rh4BG225600 Rh4CG236400 Rh4DG222000
rosa_wichuraiana	Rw4G019210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	297, 306
AclWI	GGATC	1 cut(s)	455
AcsI	RAATTY	2 cut(s)	406, 496
AfaI	GTAC	1 cut(s)	14
AfiI	CCNNNNNNNGG	3 cut(s)	91, 219, 455
AgsI	TTSAA	6 cut(s)	46, 73, 136, 242, 263, 412
AluBI	AGCT	1 cut(s)	164
AluI	AGCT	1 cut(s)	164
AlwI	GGATC	1 cut(s)	455
AoxI	GGCC	1 cut(s)	221
ApeKI	GCWGC	1 cut(s)	192
ApoI	RAATTY	2 cut(s)	406, 496
ArsI	GACNNNNNNTTYG	2 cut(s)	405, 437
AsuNHI	GCTAGC	1 cut(s)	391
BbvI	GCAGC	1 cut(s)	204
BccI	CCATC	2 cut(s)	208, 359
BfaI	CTAG	4 cut(s)	50, 77, 165, 392
BfmI	CTRYAG	1 cut(s)	190
BisI	GCNGC	1 cut(s)	193
BlsI	GCNGC	1 cut(s)	194
BmiI	GGNNCC	1 cut(s)	83
BmrI	ACTGGG	1 cut(s)	25
BmsI	GCATC	1 cut(s)	238
BmtI	GCTAGC	1 cut(s)	395
BmuI	ACTGGG	1 cut(s)	25
BsaJI	CCNNGG	1 cut(s)	218
Bsc4I	CCNNNNNNNGG	3 cut(s)	91, 219, 455
Bse1I	ACTGG	2 cut(s)	20, 491
BseDI	CCNNGG	1 cut(s)	218
BseGI	GGATG	1 cut(s)	504
BseLI	CCNNNNNNNGG	3 cut(s)	91, 219, 455
BseNI	ACTGG	2 cut(s)	20, 491
BseXI	GCAGC	1 cut(s)	204
BseYI	CCCAGC	1 cut(s)	160
BshFI	GGCC	1 cut(s)	223
BslFI	GGGAC	1 cut(s)	298
BslI	CCNNNNNNNGG	3 cut(s)	91, 219, 455
BsmFI	GGGAC	1 cut(s)	298
BsnI	GGCC	1 cut(s)	223
Bsp143I	GATC	1 cut(s)	460
BspACI	CCGC	2 cut(s)	297, 306
BspANI	GGCC	1 cut(s)	223
BspLI	GGNNCC	1 cut(s)	83
BspMAI	CTGCAG	1 cut(s)	194
BspOI	GCTAGC	1 cut(s)	395
BspPI	GGATC	1 cut(s)	455
BsrI	ACTGG	2 cut(s)	20, 491
BssECI	CCNNGG	1 cut(s)	218
BssMI	GATC	1 cut(s)	460
BssT1I	CCWWGG	1 cut(s)	218
Bst4CI	ACNGT	1 cut(s)	430
BstAPI	GCANNNNNTGC	1 cut(s)	401
BstC8I	GCNNGC	1 cut(s)	393
BstDEI	CTNAG	1 cut(s)	271
BstF5I	GGATG	1 cut(s)	504
BstKTI	GATC	1 cut(s)	463
BstMBI	GATC	1 cut(s)	460
BstMWI	GCNNNNNNNGC	3 cut(s)	178, 305, 401
BstSFI	CTRYAG	1 cut(s)	190
BstV1I	GCAGC	1 cut(s)	204
BstX2I	RGATCY	1 cut(s)	460
BstYI	RGATCY	1 cut(s)	460
BsuRI	GGCC	1 cut(s)	223
BtsCI	GGATG	1 cut(s)	504
BtsIMutI	CAGTG	1 cut(s)	498
Cac8I	GCNNGC	1 cut(s)	393
Csp6I	GTAC	1 cut(s)	13
CviAII	CATG	1 cut(s)	401
CviJI	RGCY	4 cut(s)	164, 223, 391, 486
CviKI_1	RGCY	4 cut(s)	164, 223, 391, 486
CviQI	GTAC	1 cut(s)	13
DdeI	CTNAG	1 cut(s)	271
DpnI	GATC	1 cut(s)	462
DpnII	GATC	1 cut(s)	460
Eco130I	CCWWGG	1 cut(s)	218
Eco147I	AGGCCT	1 cut(s)	223
EcoRI	GAATTC	1 cut(s)	496
EcoT14I	CCWWGG	1 cut(s)	218
ErhI	CCWWGG	1 cut(s)	218
FaeI	CATG	1 cut(s)	404
FaiI	YATR	6 cut(s)	157, 334, 402, 530, 539, 549
FaqI	GGGAC	1 cut(s)	298
FatI	CATG	1 cut(s)	400
FauI	CCCGC	2 cut(s)	304, 313
Fnu4HI	GCNGC	1 cut(s)	193
FokI	GGATG	1 cut(s)	491
Fsp4HI	GCNGC	1 cut(s)	193
FspBI	CTAG	4 cut(s)	50, 77, 165, 392
GluI	GCNGC	1 cut(s)	193
GsaI	CCCAGC	1 cut(s)	164
HaeIII	GGCC	1 cut(s)	223
Hin1II	CATG	1 cut(s)	404
HinfI	GANTC	3 cut(s)	129, 140, 186
Hpy188I	TCNGA	1 cut(s)	363
Hpy188III	TCNNGA	2 cut(s)	50, 133
Hpy99I	CGWCG	1 cut(s)	321
HpyCH4III	ACNGT	1 cut(s)	430
HpyCH4V	TGCA	6 cut(s)	181, 192, 229, 257, 374, 404
HpyF10VI	GCNNNNNNNGC	3 cut(s)	178, 305, 401
HpyF3I	CTNAG	1 cut(s)	271
Hsp92II	CATG	1 cut(s)	404
Kzo9I	GATC	1 cut(s)	460
LpnPI	CCDG	3 cut(s)	174, 360, 504
Lsp1109I	GCAGC	1 cut(s)	204
LweI	GCATC	1 cut(s)	238
MaeI	CTAG	4 cut(s)	50, 77, 165, 392
MalI	GATC	1 cut(s)	462
MboI	GATC	1 cut(s)	460
MboII	GAAGA	3 cut(s)	42, 89, 195
MfeI	CAATTG	1 cut(s)	245
MflI	RGATCY	1 cut(s)	460
MluCI	AATT	6 cut(s)	245, 252, 258, 369, 406, 496
MmeI	TCCRAC	2 cut(s)	233, 417
MnlI	CCTC	5 cut(s)	234, 278, 358, 512, 518
MunI	CAATTG	1 cut(s)	245
MwoI	GCNNNNNNNGC	3 cut(s)	178, 305, 401
NdeII	GATC	1 cut(s)	460
NheI	GCTAGC	1 cut(s)	391
NlaIII	CATG	1 cut(s)	404
NlaIV	GGNNCC	1 cut(s)	83
NmeAIII	GCCGAG	1 cut(s)	103
PceI	AGGCCT	1 cut(s)	223
PfeI	GAWTC	3 cut(s)	129, 140, 186
PkrI	GCNGC	1 cut(s)	194
PspFI	CCCAGC	1 cut(s)	160
PspN4I	GGNNCC	1 cut(s)	83
PstI	CTGCAG	1 cut(s)	194
PsuI	RGATCY	1 cut(s)	460
RsaI	GTAC	1 cut(s)	14
RsaNI	GTAC	1 cut(s)	13
SatI	GCNGC	1 cut(s)	193
Sau3AI	GATC	1 cut(s)	460
SetI	ASST	2 cut(s)	166, 457
SfaNI	GCATC	1 cut(s)	238
SfcI	CTRYAG	1 cut(s)	190
Sse9I	AATT	6 cut(s)	245, 252, 258, 369, 406, 496
SseBI	AGGCCT	1 cut(s)	223
SsiI	CCGC	2 cut(s)	297, 306
SspMI	CTAG	4 cut(s)	50, 77, 165, 392
StuI	AGGCCT	1 cut(s)	223
StyI	CCWWGG	1 cut(s)	218
TaaI	ACNGT	1 cut(s)	430
TaqI	TCGA	2 cut(s)	57, 100
TasI	AATT	6 cut(s)	245, 252, 258, 369, 406, 496
TfiI	GAWTC	3 cut(s)	129, 140, 186
TscAI	CASTG	1 cut(s)	498
TseI	GCWGC	1 cut(s)	192
TspRI	CASTG	1 cut(s)	498
XapI	RAATTY	2 cut(s)	406, 496
XbaI	TCTAGA	1 cut(s)	49
XspI	CTAG	4 cut(s)	50, 77, 165, 392

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.