Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0023895.1

Orthogroup ID

OG0008859

Physical Location & Seq

Genomic Coordinates Reverse (-)

1059 .. 4487

Gene Structure 3429 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0023895.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2658 bp

atggttgccaaggggagtagttgtaccactcaggtctctccctctatgactgttcaagaaaagggtagtagaaataagaggaagttccgggctgatccacctttaggggaccagaataagattttgcctttacctcaaactgaatgtgcaagttacgaattttcagcggaaaaatttgaaatcagtcaccagaatcatggacaaaccagtgtctgtgacctgtgttttgttaatcaagaccattctgatgggttgaaacttgaccttggattgtctagtgctgttggttcatctgaggttggcccaagccggactagaagggaatcagaggcagaagagtttcaagatgcagattggagtgatctcacagaaacccagcttgaagaacttgttatgaacaatttggactcaattttcaagagtgcaattaaaaagattgttgcttgtggttacaccgaagacgttgctacaaaggctgttttgcggtctggtctttgttatgggtccaaagacactgtgtctaatatagtggataatactttagtttttcttaggagtggccaagaaattgatccttcaagggagcactgttttgaagatttacagcaactagagaagtacatattggcggaactggtgtgtgttcttcgcgagattaggcctttcttcagcactggcgatgcaatgtggtgcttattgatctgtgacatgaatgtctctcatgcttgtgcaatggatggtgaccccataagcagtttcctcagtgatggcgtgtcaaatggaagttcacccatttcaaatcaacctcagcccaaaacagaagccaagagtttagaattgggtcttctgaatgctggtaagccgagctcatcaatgcctggttctcctagttcacagtctgagacatctaaaccaagaaattcggttaacaatggattactcttagaaaaagagggcacaaccggaacatctccatctcctgctgtagaggaaaagcttgtgggcactagaaaggtccattctattagtactaaaagagaatacatgcttcgacaaaagtcacttcatttggagaaaaattaccgtacatatggatgtaaagggtcttcaagagcagggaagctgagtggtttgggcggtttaattttggataagaagttaaaatctgtgtcagactctaccgctcttaatttaaagaatgcatctttgaagataagcaaggcaatgggagttgatttgcctaaagacaatgggaaccacattctttcttccaatgctggaccttcttcccctggagtttttaacgtggatgctgagaatgctgcttcagttttgcctatgaacagtgtctcatccatgttaccttctgcgaataattcaacaacattaccggcccccattagtgcaaaaacattgccagcagccgctactccacctgcattatcagctgctgatactgagctttccctttcactgcctacaaaaagcgacactaccccagtgcctgttagctttaattctgataactcaaattctatttttgctgggatgccttttgataagtccttggggcagtgggtacccagggacaaaaaagatgagatgattttgaagttgggccctagggtgcgggacctgcaaaatcagctgcaagagtggacagaatgggctaaccagaaggttatgcaggctgcccgtaggctaggtaaggataaggctgaactgaagtcattaaggcaagagaaagaagaagttgaacggctgaagaaagagaaactaacgttggaggagaacaccatgaagaaacttgctgagatggacaatgctttgtgcaaggctagcggtcaggtggaaaaagcaaattctgccgtccggaggcttgaggtggagaatgctgcactaaggcaggagatggaggctgccaagttacgcgcggcagagtcagctgcaagctgtcaagaggtatcaaagagggagaagaagacactcatgaaatttcagtcgtgggaaaagcagaaagccttgttcagcgaagaactggtgacagaaaaacgcaagttaaaacagctgcttcaggaaatagagcaagccagagatctcaaggaacaattagaggctagatggcaacaagaggagaaatcaaaggaagaactacttgagcaggcaagttcaataagaaaagaaagggaacaacttgaggcttcagcaaaatccaaggaggatcagatcaaactgaaagcagaaagcaatctgcagaaatacaaagatgatattcagaatctcgataaagaaatctcccagttgagactcaagagtgattcttcgaagattgcagcccttcggaggggtgtagatggaagttatgccagcaaggtatcagacgttgaaaatagtctggatcagaagggctcccagatgccatatatctcagaagtagtgaaggatttgcacgactactctgagacaggaggggtgaaacgcgaaagggagtgtgtgatgtgcctctccgaggaaatgtctgtggttttcctcccatgtgcccatcaagtggtctgcagaacttgcaatgagctccatgaaaaacagggtatgaaggactgtccgtcgtgcaggagccccatacaatggcgtatttctgtacgttatgctcgatcttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4_3

Protein Analysis

885

Amino Acids

97.78

Weight (kDa)

6.67

Isoelectric Point (pI)

52.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008859)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g16660 FvH4_4g16660 FvH4_4g16660 FvH4_4g16660
malus_domestica	MD13G1177600.v1.1 MD16G1179600.v1.1
prunus_persica	Prupe.1G146600_v2.0.a1 Prupe.1G146600_v2.0.a1 Prupe.1G146600_v2.0.a1 Prupe.1G146600_v2.0.a1
pyrus_communis	pycom13g15320
rosa_chinensis	RchiOBHm_Chr4g0420121
rosa_laevigata	RLG00000007787
rosa_multiflora	Rmu_sc0015433.1_g000001 Rmu_sc0023895.1_g000001
rosa_roxburghii	Rroxscaffold_5G00362830
rosa_rugosa	Rorug04G0162300 Rorug04G0162400
rosa_samantha	Rh4AG223200 Rh4BG225600 Rh4CG236400 Rh4DG222000
rosa_wichuraiana	Rw4G019210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1444
AasI	GACNNNNNNGTC	1 cut(s)	713
Acc36I	ACCTGC	2 cut(s)	1444, 1644
Acc65I	GGTACC	1 cut(s)	1579
AccB1I	GGYRCC	1 cut(s)	1579
AccB7I	CCANNNNNTGG	2 cut(s)	2548, 2625
AccBSI	CCGCTC	1 cut(s)	1184
AccII	CGCG	4 cut(s)	651, 1932, 1934, 2481
AccIII	TCCGGA	1 cut(s)	1872
AciI	CCGC	9 cut(s)	167, 484, 629, 1137, 1182, 1425, 1630, 1842, 1934
AclI	AACGTT	1 cut(s)	1781
AclWI	GGATC	4 cut(s)	89, 566, 2229, 2406
AcoI	YGGCCR	1 cut(s)	559
AcsI	RAATTY	6 cut(s)	158, 173, 919, 1531, 1861, 1994
AcuI	CTGAAG	6 cut(s)	652, 1311, 1745, 1784, 2057, 2187
AfaI	GTAC	6 cut(s)	25, 620, 1030, 1087, 1581, 2640
AfiI	CCNNNNNNNGG	7 cut(s)	104, 1875, 2343, 2344, 2509, 2548, 2625
AhdI	GACNNNNNGTC	2 cut(s)	517, 2602
AjnI	CCWGG	3 cut(s)	877, 1291, 1583
AjuI	GAANNNNNNNTTGG	4 cut(s)	608, 640, 1766, 1798
Alw21I	GWGCWC	3 cut(s)	588, 869, 2574
Alw26I	GTCTC	6 cut(s)	40, 721, 896, 1354, 2299, 2456
AlwI	GGATC	4 cut(s)	89, 566, 2229, 2406
AlwNI	CAGNNNCTG	3 cut(s)	213, 1451, 1505
Aor13HI	TCCGGA	1 cut(s)	1872
AoxI	GGCC	5 cut(s)	301, 559, 659, 1392, 1618
ApaI	GGGCCC	1 cut(s)	1622
ApoI	RAATTY	6 cut(s)	158, 173, 919, 1531, 1861, 1994
ArsI	GACNNNNNNTTYG	2 cut(s)	209, 241
Asp700I	GAANNNNTTC	1 cut(s)	339
Asp718I	GGTACC	1 cut(s)	1579
AspA2I	CCTAGG	1 cut(s)	1622
AspLEI	GCGC	1 cut(s)	1934
AspS9I	GGNCC	9 cut(s)	109, 302, 504, 1015, 1280, 1393, 1618, 1619, 1633
AsuC2I	CCSGG	1 cut(s)	89
AsuHPI	GGTGA	5 cut(s)	179, 752, 780, 2053, 2485
AsuII	TTCGAA	1 cut(s)	2324
AsuNHI	GCTAGC	1 cut(s)	1838
AvaII	GGWCC	5 cut(s)	109, 504, 1015, 1280, 1633
AvrII	CCTAGG	1 cut(s)	1622
BaeGI	GKGCMC	4 cut(s)	959, 1007, 1622, 2542
BalI	TGGCCA	1 cut(s)	561
BanI	GGYRCC	1 cut(s)	1579
BanII	GRGCYC	5 cut(s)	869, 1622, 2411, 2574, 2618
BarI	GAAGNNNNNNTAC	2 cut(s)	1090, 1122
BbsI	GAAGAC	4 cut(s)	465, 836, 1098, 1988
Bbv12I	GWGCWC	3 cut(s)	588, 869, 2574
BbvCI	CCTCAGC	1 cut(s)	807
BccI	CCATC	9 cut(s)	242, 731, 761, 982, 1810, 1906, 2115, 2348, 2550
BceAI	ACGGC	2 cut(s)	1775, 1853
BcgI	CGANNNNNNTGC	2 cut(s)	446, 480
BciT130I	CCWGG	3 cut(s)	879, 1293, 1585
BcnI	CCSGG	1 cut(s)	89
BcoDI	GTCTC	6 cut(s)	40, 721, 896, 1354, 2299, 2456
BfaI	CTAG	9 cut(s)	276, 315, 611, 888, 1008, 1623, 1703, 1839, 2118
BfmI	CTRYAG	3 cut(s)	984, 2252, 2554
BfuAI	ACCTGC	2 cut(s)	1444, 1644
BglII	AGATCT	1 cut(s)	2095
BlnI	CCTAGG	1 cut(s)	1622
BmcAI	AGTACT	1 cut(s)	1030
Bme1390I	CCNGG	4 cut(s)	89, 879, 1293, 1585
Bme18I	GGWCC	5 cut(s)	109, 504, 1015, 1280, 1633
BmeRI	GACNNNNNGTC	2 cut(s)	517, 2602
BmgT120I	GGNCC	9 cut(s)	109, 302, 504, 1015, 1280, 1393, 1618, 1619, 1633
BmiI	GGNNCC	9 cut(s)	110, 505, 1256, 1395, 1581, 1620, 1634, 2410, 2615
BmrFI	CCNGG	4 cut(s)	89, 879, 1293, 1585
BmrI	ACTGGG	2 cut(s)	1493, 2293
BmsI	GCATC	6 cut(s)	337, 670, 1211, 1300, 1539, 2406
BmtI	GCTAGC	1 cut(s)	1842
BmuI	ACTGGG	2 cut(s)	1493, 2293
BoxI	GACNNNNGTC	1 cut(s)	1057
BpiI	GAAGAC	4 cut(s)	465, 836, 1098, 1988
BpmI	CTGGAG	1 cut(s)	1314
Bpu10I	CCTNAGC	1 cut(s)	807
Bpu14I	TTCGAA	1 cut(s)	2324
BpuEI	CTTGAG	5 cut(s)	1901, 2084, 2177, 2216, 2294
BpuMI	CCSGG	1 cut(s)	89
BsaI	GGTCTC	1 cut(s)	40
BsaJI	CCNNGG	9 cut(s)	9, 265, 1291, 1566, 1583, 1584, 1622, 2214, 2508
BsaWI	WCCGGW	2 cut(s)	962, 1872
BsaXI	ACNNNNNCTCC	2 cut(s)	7, 37
Bsc4I	CCNNNNNNNGG	7 cut(s)	104, 1875, 2343, 2344, 2509, 2548, 2625
Bse118I	RCCGGY	1 cut(s)	1390
Bse1I	ACTGG	6 cut(s)	207, 639, 679, 1499, 2043, 2299
Bse3DI	GCAATG	5 cut(s)	690, 738, 1230, 1412, 2572
BseAI	TCCGGA	1 cut(s)	1872
BseBI	CCWGG	3 cut(s)	879, 1293, 1585
BseDI	CCNNGG	9 cut(s)	9, 265, 1291, 1566, 1583, 1584, 1622, 2214, 2508
BseGI	GGATG	5 cut(s)	742, 1100, 1315, 1352, 1554
BseLI	CCNNNNNNNGG	7 cut(s)	104, 1875, 2343, 2344, 2509, 2548, 2625
BseMI	GCAATG	5 cut(s)	690, 738, 1230, 1412, 2572
BseNI	ACTGG	6 cut(s)	207, 639, 679, 1499, 2043, 2299
BseRI	GAGGAG	2 cut(s)	1802, 2147
BseSI	GKGCMC	4 cut(s)	959, 1007, 1622, 2542
BseYI	CCCAGC	2 cut(s)	375, 1544
BsgI	GTGCAG	2 cut(s)	1881, 2629
Bsh1236I	CGCG	4 cut(s)	651, 1932, 1934, 2481
BshFI	GGCC	5 cut(s)	303, 561, 661, 1394, 1620
BshNI	GGYRCC	1 cut(s)	1579
BsiHKAI	GWGCWC	3 cut(s)	588, 869, 2574
BsiSI	CCGG	5 cut(s)	88, 310, 963, 1391, 1873
BslFI	GGGAC	3 cut(s)	122, 1601, 1646
BslI	CCNNNNNNNGG	7 cut(s)	104, 1875, 2343, 2344, 2509, 2548, 2625
BsmAI	GTCTC	6 cut(s)	40, 721, 896, 1354, 2299, 2456
BsmFI	GGGAC	3 cut(s)	122, 1601, 1646
BsmI	GAATGC	4 cut(s)	856, 1204, 1324, 1897
BsnI	GGCC	5 cut(s)	303, 561, 661, 1394, 1620
Bso31I	GGTCTC	1 cut(s)	40
Bsp119I	TTCGAA	1 cut(s)	2324
Bsp120I	GGGCCC	1 cut(s)	1618
Bsp1286I	GDGCHC	9 cut(s)	588, 869, 959, 1007, 1622, 2411, 2542, 2574, 2618
Bsp13I	TCCGGA	1 cut(s)	1872
Bsp143I	GATC	9 cut(s)	94, 361, 571, 699, 2095, 2221, 2226, 2398, 2651
Bsp68I	TCGCGA	1 cut(s)	651
BspACI	CCGC	9 cut(s)	167, 484, 629, 1137, 1182, 1425, 1630, 1842, 1934
BspANI	GGCC	5 cut(s)	303, 561, 661, 1394, 1620
BspEI	TCCGGA	1 cut(s)	1872
BspFNI	CGCG	4 cut(s)	651, 1932, 1934, 2481
BspHI	TCATGA	1 cut(s)	1989
BspLI	GGNNCC	9 cut(s)	110, 505, 1256, 1395, 1581, 1620, 1634, 2410, 2615
BspMAI	CTGCAG	2 cut(s)	2256, 2558
BspMI	ACCTGC	2 cut(s)	1444, 1644
BspOI	GCTAGC	1 cut(s)	1842
BspPI	GGATC	4 cut(s)	89, 566, 2229, 2406
BspT104I	TTCGAA	1 cut(s)	2324
BspT107I	GGYRCC	1 cut(s)	1579
BspTNI	GGTCTC	1 cut(s)	40
BsrBI	CCGCTC	1 cut(s)	1184
BsrDI	GCAATG	5 cut(s)	690, 738, 1230, 1412, 2572
BsrFI	RCCGGY	1 cut(s)	1390
BsrI	ACTGG	6 cut(s)	207, 639, 679, 1499, 2043, 2299
BssAI	RCCGGY	1 cut(s)	1390
BssECI	CCNNGG	9 cut(s)	9, 265, 1291, 1566, 1583, 1584, 1622, 2214, 2508
BssMI	GATC	9 cut(s)	94, 361, 571, 699, 2095, 2221, 2226, 2398, 2651
BssT1I	CCWWGG	5 cut(s)	9, 265, 1566, 1622, 2214
Bst2UI	CCWGG	3 cut(s)	879, 1293, 1585
Bst4CI	ACNGT	7 cut(s)	52, 517, 590, 897, 1085, 1346, 2600
Bst6I	CTCTTC	1 cut(s)	330
BstAPI	GCANNNNNTGC	2 cut(s)	1865, 2562
BstBI	TTCGAA	1 cut(s)	2324
BstC8I	GCNNGC	7 cut(s)	1419, 1689, 1840, 1951, 2088, 2163, 2368
BstEII	GGTNACC	1 cut(s)	740
BstENI	CCTNNNNNAGG	1 cut(s)	2507
BstF5I	GGATG	5 cut(s)	742, 1100, 1315, 1352, 1554
BstFNI	CGCG	4 cut(s)	651, 1932, 1934, 2481
BstHHI	GCGC	1 cut(s)	1934
BstKTI	GATC	9 cut(s)	97, 364, 574, 702, 2098, 2224, 2229, 2401, 2654
BstMAI	GTCTC	6 cut(s)	40, 721, 896, 1354, 2299, 2456
BstMBI	GATC	9 cut(s)	94, 361, 571, 699, 2095, 2221, 2226, 2398, 2651
BstMWI	GCNNNNNNNGC	9 cut(s)	473, 1319, 1445, 1636, 1645, 1839, 1865, 1943, 2562
BstNI	CCWGG	3 cut(s)	879, 1293, 1585
BstNSI	RCATGY	1 cut(s)	1048
BstPAI	GACNNNNGTC	1 cut(s)	1057
BstPI	GGTNACC	1 cut(s)	740
BstSCI	CCNGG	4 cut(s)	87, 877, 1291, 1583
BstSFI	CTRYAG	3 cut(s)	984, 2252, 2554
BstSLI	GKGCMC	4 cut(s)	959, 1007, 1622, 2542
BstUI	CGCG	4 cut(s)	651, 1932, 1934, 2481
BstV2I	GAAGAC	4 cut(s)	465, 836, 1098, 1988
BstX2I	RGATCY	1 cut(s)	2095
BstXI	CCANNNNNNTGG	2 cut(s)	197, 248
BstYI	RGATCY	1 cut(s)	2095
BsuRI	GGCC	5 cut(s)	303, 561, 661, 1394, 1620
BtgZI	GCGATG	1 cut(s)	693
BtsCI	GGATG	5 cut(s)	742, 1100, 1315, 1352, 1554
BtsI	GCAGTG	2 cut(s)	1472, 1580
BtsIMutI	CAGTG	9 cut(s)	214, 513, 586, 672, 769, 1351, 1472, 1506, 1580
BtuMI	TCGCGA	1 cut(s)	651
BveI	ACCTGC	2 cut(s)	1444, 1644
Cac8I	GCNNGC	7 cut(s)	1419, 1689, 1840, 1951, 2088, 2163, 2368
CaiI	CAGNNNCTG	3 cut(s)	213, 1451, 1505
CciI	TCATGA	1 cut(s)	1989
CfoI	GCGC	1 cut(s)	1934
Cfr10I	RCCGGY	1 cut(s)	1390
Cfr13I	GGNCC	9 cut(s)	109, 302, 504, 1015, 1280, 1393, 1618, 1619, 1633
Csp6I	GTAC	6 cut(s)	24, 619, 1029, 1086, 1580, 2639
CviAII	CATG	9 cut(s)	197, 709, 722, 1045, 1357, 1798, 1990, 2535, 2576
CviQI	GTAC	6 cut(s)	24, 619, 1029, 1086, 1580, 2639
DpnI	GATC	9 cut(s)	96, 363, 573, 701, 2097, 2223, 2228, 2400, 2653
DpnII	GATC	9 cut(s)	94, 361, 571, 699, 2095, 2221, 2226, 2398, 2651
DraI	TTTAAA	1 cut(s)	1194
DrdI	GACNNNNNNGTC	1 cut(s)	713
DriI	GACNNNNNGTC	2 cut(s)	517, 2602
DseDI	GACNNNNNNGTC	1 cut(s)	713
EaeI	YGGCCR	1 cut(s)	559
Eam1104I	CTCTTC	1 cut(s)	330
Eam1105I	GACNNNNNGTC	2 cut(s)	517, 2602
EarI	CTCTTC	1 cut(s)	330
EciI	GGCGGA	1 cut(s)	644
Ecl136II	GAGCTC	2 cut(s)	867, 2572
Eco130I	CCWWGG	5 cut(s)	9, 265, 1566, 1622, 2214
Eco147I	AGGCCT	1 cut(s)	661
Eco24I	GRGCYC	5 cut(s)	869, 1622, 2411, 2574, 2618
Eco31I	GGTCTC	1 cut(s)	40
Eco47I	GGWCC	5 cut(s)	109, 504, 1015, 1280, 1633
Eco53kI	GAGCTC	2 cut(s)	867, 2572
Eco57I	CTGAAG	6 cut(s)	652, 1311, 1745, 1784, 2057, 2187
Eco91I	GGTNACC	1 cut(s)	740
EcoICRI	GAGCTC	2 cut(s)	867, 2572
EcoNI	CCTNNNNNAGG	1 cut(s)	2507
EcoO109I	RGGNCCY	2 cut(s)	1619, 1633
EcoO65I	GGTNACC	1 cut(s)	740
EcoRII	CCWGG	3 cut(s)	877, 1291, 1583
EcoT14I	CCWWGG	5 cut(s)	9, 265, 1566, 1622, 2214
EcoT22I	ATGCAT	1 cut(s)	1204
EcoT38I	GRGCYC	5 cut(s)	869, 1622, 2411, 2574, 2618
ErhI	CCWWGG	5 cut(s)	9, 265, 1566, 1622, 2214
FaeI	CATG	9 cut(s)	200, 712, 725, 1048, 1360, 1801, 1993, 2538, 2579
FalI	AAGNNNNNCTT	2 cut(s)	2139, 2171
FaqI	GGGAC	3 cut(s)	122, 1601, 1646
FatI	CATG	9 cut(s)	196, 708, 721, 1044, 1356, 1797, 1989, 2534, 2575
FauI	CCCGC	1 cut(s)	1623
FauNDI	CATATG	1 cut(s)	1090
FokI	GGATG	5 cut(s)	749, 1107, 1322, 1339, 1561
FriOI	GRGCYC	5 cut(s)	869, 1622, 2411, 2574, 2618
FspBI	CTAG	9 cut(s)	276, 315, 611, 888, 1008, 1623, 1703, 1839, 2118
GlaI	GCGC	1 cut(s)	1933
GsaI	CCCAGC	2 cut(s)	379, 1548
GsuI	CTGGAG	1 cut(s)	1314
HaeIII	GGCC	5 cut(s)	303, 561, 661, 1394, 1620
HapII	CCGG	5 cut(s)	88, 310, 963, 1391, 1873
HhaI	GCGC	1 cut(s)	1934
Hin1II	CATG	9 cut(s)	200, 712, 725, 1048, 1360, 1801, 1993, 2538, 2579
Hin6I	GCGC	1 cut(s)	1932
HinP1I	GCGC	1 cut(s)	1932
HincII	GTYRAC	1 cut(s)	928
HindII	GTYRAC	1 cut(s)	928
HindIII	AAGCTT	1 cut(s)	995
HinfI	GANTC	8 cut(s)	193, 323, 407, 1175, 1940, 2278, 2307, 2318
HpaI	GTTAAC	1 cut(s)	928
HpaII	CCGG	5 cut(s)	88, 310, 963, 1391, 1873
HphI	GGTGA	5 cut(s)	179, 752, 780, 2053, 2485
Hpy166II	GTNNAC	4 cut(s)	788, 893, 928, 1659
Hpy8I	GTNNAC	4 cut(s)	788, 893, 928, 1659
Hpy99I	CGWCG	1 cut(s)	2608
HpyAV	CCTTC	9 cut(s)	312, 585, 1293, 1374, 1672, 2348, 2398, 2434, 2587
HpyCH4III	ACNGT	7 cut(s)	52, 517, 590, 897, 1085, 1346, 2600
HpyCH4IV	ACGT	5 cut(s)	462, 1305, 1781, 2382, 2641
HpyF10VI	GCNNNNNNNGC	9 cut(s)	473, 1319, 1445, 1636, 1645, 1839, 1865, 1943, 2562
HpySE526I	ACGT	5 cut(s)	462, 1305, 1781, 2382, 2641
Hsp92II	CATG	9 cut(s)	200, 712, 725, 1048, 1360, 1801, 1993, 2538, 2579
HspAI	GCGC	1 cut(s)	1932
Kpn2I	TCCGGA	1 cut(s)	1872
KpnI	GGTACC	1 cut(s)	1583
KspAI	GTTAAC	1 cut(s)	928
Kzo9I	GATC	9 cut(s)	94, 361, 571, 699, 2095, 2221, 2226, 2398, 2651
LmnI	GCTCC	4 cut(s)	583, 2414, 2577, 2613
LweI	GCATC	6 cut(s)	337, 670, 1211, 1300, 1539, 2406
MaeI	CTAG	9 cut(s)	276, 315, 611, 888, 1008, 1623, 1703, 1839, 2118
MaeII	ACGT	5 cut(s)	462, 1305, 1781, 2382, 2641
MalI	GATC	9 cut(s)	96, 363, 573, 701, 2097, 2223, 2228, 2400, 2653
MbiI	CCGCTC	1 cut(s)	1184
MboI	GATC	9 cut(s)	94, 361, 571, 699, 2095, 2221, 2226, 2398, 2651
MflI	RGATCY	1 cut(s)	2095
MhlI	GDGCHC	9 cut(s)	588, 869, 959, 1007, 1622, 2411, 2542, 2574, 2618
MlsI	TGGCCA	1 cut(s)	561
MluNI	TGGCCA	1 cut(s)	561
MlyI	GAGTC	4 cut(s)	401, 1169, 1949, 2301
MmeI	TCCRAC	1 cut(s)	1764
Mox20I	TGGCCA	1 cut(s)	561
Mph1103I	ATGCAT	1 cut(s)	1204
MroI	TCCGGA	1 cut(s)	1872
MroXI	GAANNNNTTC	1 cut(s)	339
MscI	TGGCCA	1 cut(s)	561
MslI	CAYNNNNRTG	3 cut(s)	246, 726, 1093
Msp20I	TGGCCA	1 cut(s)	561
MspA1I	CMGCKG	5 cut(s)	167, 1448, 1648, 1946, 2068
MspI	CCGG	5 cut(s)	88, 310, 963, 1391, 1873
MspR9I	CCNGG	4 cut(s)	89, 879, 1293, 1585
Mva1269I	GAATGC	4 cut(s)	856, 1204, 1324, 1897
MvaI	CCWGG	3 cut(s)	879, 1293, 1585
MvnI	CGCG	4 cut(s)	651, 1932, 1934, 2481
MwoI	GCNNNNNNNGC	9 cut(s)	473, 1319, 1445, 1636, 1645, 1839, 1865, 1943, 2562
NciI	CCSGG	1 cut(s)	89
NdeI	CATATG	1 cut(s)	1090
NdeII	GATC	9 cut(s)	94, 361, 571, 699, 2095, 2221, 2226, 2398, 2651
NheI	GCTAGC	1 cut(s)	1838
NlaIII	CATG	9 cut(s)	200, 712, 725, 1048, 1360, 1801, 1993, 2538, 2579
NlaIV	GGNNCC	9 cut(s)	110, 505, 1256, 1395, 1581, 1620, 1634, 2410, 2615
NmeAIII	GCCGAG	1 cut(s)	888
NmuCI	GTSAC	6 cut(s)	185, 215, 704, 740, 1059, 2041
NruI	TCGCGA	1 cut(s)	651
NsiI	ATGCAT	1 cut(s)	1204
NspI	RCATGY	1 cut(s)	1048
NspV	TTCGAA	1 cut(s)	2324
PagI	TCATGA	1 cut(s)	1989
PaqCI	CACCTGC	1 cut(s)	1444
PasI	CCCWGGG	1 cut(s)	1584
PceI	AGGCCT	1 cut(s)	661
PcsI	WCGNNNNNNNCGW	1 cut(s)	2647
PctI	GAATGC	4 cut(s)	856, 1204, 1324, 1897
PdmI	GAANNNNTTC	1 cut(s)	339
PfeI	GAWTC	4 cut(s)	193, 323, 2278, 2318
PflMI	CCANNNNNTGG	2 cut(s)	2548, 2625
PleI	GAGTC	4 cut(s)	401, 1169, 1948, 2301
PpsI	GAGTC	4 cut(s)	401, 1169, 1948, 2301
PpuMI	RGGWCCY	1 cut(s)	1633
PshAI	GACNNNNGTC	1 cut(s)	1057
Psp124BI	GAGCTC	2 cut(s)	869, 2574
Psp1406I	AACGTT	1 cut(s)	1781
Psp5II	RGGWCCY	1 cut(s)	1633
Psp6I	CCWGG	3 cut(s)	877, 1291, 1583
PspEI	GGTNACC	1 cut(s)	740
PspFI	CCCAGC	2 cut(s)	375, 1544
PspGI	CCWGG	3 cut(s)	877, 1291, 1583
PspN4I	GGNNCC	9 cut(s)	110, 505, 1256, 1395, 1581, 1620, 1634, 2410, 2615
PspOMI	GGGCCC	1 cut(s)	1618
PspPI	GGNCC	9 cut(s)	109, 302, 504, 1015, 1280, 1393, 1618, 1619, 1633
PspPPI	RGGWCCY	1 cut(s)	1633
PstI	CTGCAG	2 cut(s)	2256, 2558
PstNI	CAGNNNCTG	3 cut(s)	213, 1451, 1505
PsuI	RGATCY	1 cut(s)	2095
PvuII	CAGCTG	4 cut(s)	1448, 1648, 1946, 2068
RruI	TCGCGA	1 cut(s)	651
RsaI	GTAC	6 cut(s)	25, 620, 1030, 1087, 1581, 2640
RsaNI	GTAC	6 cut(s)	24, 619, 1029, 1086, 1580, 2639
RseI	CAYNNNNRTG	3 cut(s)	246, 726, 1093
SacI	GAGCTC	2 cut(s)	869, 2574
Sau3AI	GATC	9 cut(s)	94, 361, 571, 699, 2095, 2221, 2226, 2398, 2651
Sau96I	GGNCC	9 cut(s)	109, 302, 504, 1015, 1280, 1393, 1618, 1619, 1633
ScaI	AGTACT	1 cut(s)	1030
SchI	GAGTC	4 cut(s)	401, 1169, 1949, 2301
ScrFI	CCNGG	4 cut(s)	89, 879, 1293, 1585
SduI	GDGCHC	9 cut(s)	588, 869, 959, 1007, 1622, 2411, 2542, 2574, 2618
SfaNI	GCATC	6 cut(s)	337, 670, 1211, 1300, 1539, 2406
SfcI	CTRYAG	3 cut(s)	984, 2252, 2554
SfuI	TTCGAA	1 cut(s)	2324
SinI	GGWCC	5 cut(s)	109, 504, 1015, 1280, 1633
SmiMI	CAYNNNNRTG	3 cut(s)	246, 726, 1093
SmlI	CTYRAG	5 cut(s)	1880, 2099, 2156, 2195, 2309
SmoI	CTYRAG	5 cut(s)	1880, 2099, 2156, 2195, 2309
SseBI	AGGCCT	1 cut(s)	661
SsiI	CCGC	9 cut(s)	167, 484, 629, 1137, 1182, 1425, 1630, 1842, 1934
SspMI	CTAG	9 cut(s)	276, 315, 611, 888, 1008, 1623, 1703, 1839, 2118
SstI	GAGCTC	2 cut(s)	869, 2574
StuI	AGGCCT	1 cut(s)	661
StyD4I	CCNGG	4 cut(s)	87, 877, 1291, 1583
StyI	CCWWGG	5 cut(s)	9, 265, 1566, 1622, 2214
TaaI	ACNGT	7 cut(s)	52, 517, 590, 897, 1085, 1346, 2600
TaiI	ACGT	5 cut(s)	465, 1308, 1784, 2385, 2644
TaqI	TCGA	4 cut(s)	1051, 2283, 2324, 2650
TatI	WGTACW	2 cut(s)	618, 1028
TauI	GCSGC	2 cut(s)	1427, 1937
TfiI	GAWTC	4 cut(s)	193, 323, 2278, 2318
TscAI	CASTG	9 cut(s)	214, 520, 593, 679, 769, 1351, 1479, 1506, 1580
TseFI	GTSAC	6 cut(s)	185, 215, 704, 740, 1059, 2041
Tsp45I	GTSAC	6 cut(s)	185, 215, 704, 740, 1059, 2041
TspDTI	ATGAA	9 cut(s)	279, 410, 725, 1055, 1355, 1814, 2006, 2592, 2606
TspGWI	ACGGA	1 cut(s)	2592
TspRI	CASTG	9 cut(s)	214, 520, 593, 679, 769, 1351, 1479, 1506, 1580
Van91I	CCANNNNNTGG	2 cut(s)	2548, 2625
VpaK11BI	GGWCC	5 cut(s)	109, 504, 1015, 1280, 1633
XagI	CCTNNNNNAGG	1 cut(s)	2507
XapI	RAATTY	6 cut(s)	158, 173, 919, 1531, 1861, 1994
XceI	RCATGY	1 cut(s)	1048
XmaJI	CCTAGG	1 cut(s)	1622
XmnI	GAANNNNTTC	1 cut(s)	339
XspI	CTAG	9 cut(s)	276, 315, 611, 888, 1008, 1623, 1703, 1839, 2118
ZrmI	AGTACT	1 cut(s)	1030
Zsp2I	ATGCAT	1 cut(s)	1204

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.