FvH4_4g18561

Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
Physical Location & Seq
Forward (+)
22431652 .. 22435655
4004 bp
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UTR
Exon/CDS
Intron
FvH4_4g18561.t2

Sequence Viewer

Length: 1494 bp
ATGATTTGCAGGAGGGTCTGGAGCAAGCGGGTTTGGGTCTCCGGCCACCGGTGGCTCTGTTCTGGTTTATCGCCGGCGATGGTGCATGAAGACCACACCTCTCAATTTCGTGTGTTCTCATCTTCCACCTCATTTCGTTTTGCTGATAGGATACCCAATTCTGGAATTTCTCATAATGGGAAGAGGTGCTGGTTTTCAAGTCAGGGTCAGGTGGTGAATGATGTAAATAGTGGTAATGGTGTAGTTGATGTGCCTTTGGCTCAAACTGGTGAAGGCATTGCTGAGTGTGAACTGCTTAAATGGTTTGTGAAAGAGGGTGATCAAGTCGAAGCCTTTCAGCCAATTTGTGAGGTTCAAAGTGACAAAGCAAGCATTGAGATAACAAGCCGTTATCAAGGAAGAGTTGCTCAAATAAACTACATTCCTGGTGACATTGTAAAGGTTGGAGAAATTCTTTTGAAAATGGTGGTTGAGGAATCTGAGGTTCCAAGGCAGACGTGCCATAGTTTGGAAAATACAAAGTCACTAGATTCTGACCTGAACACACAGAACATAAGTGCAGTTCTATCCACACCTCCCATTAGGAACCTTGCGAAGAAATATGGTATTGATATCAATGAAGTCCATGGATCTGGTGACGATGGGAGAGTGGTCAAAGAAGATGTCCTTAAGTATGCTTTGCAGAAGAGAATCCTTGAAGATTCATCTGCCTCCTCGAGTTCTAGTTCTGATGAATTTTCTGGATTAGAAGAGAGTTACTTGCATGCTTCAGCTAAAGCTGGAGGGATATATGAAGATAAGACAGTTACCTTGAGGGGCTTCCAGCGCGCAATGGTCAAATCAATGACTATGGCTGCAAAAGTTCCACATTTTCATTTTGTTGAGGAGATAAACTGCAATGCACTTGCAGAGCTAAAAGATTCTTTCCAAAGGAGAAACTCTGATTCAAGTGTTAAGCATACTTTCCTTCCATCATTAATCAAGACACTTTCAATGGCAATAAGCAAATATCCATTAGTGAACAGTTGCTTCACTGAGGAGTCACTTGAGGTCGTCCTAAAAGGTTCCCACAACATCGGAATCGCCATGGCTACTCCATATGGTCTAGTTGTGCCAAACATAAAGAATGTTCAGTCTCTTTCCATCATGGAGATAACAAAGGAGCTTTCGCGGTTACTACAATTGGCATTGGAAAACAAGCTTAGGCCTGAAGACATATCTGGAGGAACAATTACTCTAAGTAATATTGGAGCTATTGGTGGGAAGTATGGTTCGCCTCTTCTCAACTTGCCAGAGGTTGCCATTATTGCAATTGGACGAATTCAGAAGGTTCCACAATTTGCAGACGATGGAAGTATATATCCTGCGTCAGTTATGACGGTTAATATAGGCGCTGATCATAGAGTGCTGGACGGAGCAACTGTTGCCCGATTCTGTAAAGAGTGGAAAGAATTAATAGAGAATCCAGAGCTGCTCATGTTGCATATGACATAG

Protein Analysis

498

Amino Acids

54.73

Weight (kDa)

6.15

Isoelectric Point (pI)

46.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Biotin_lipoyl PF00364 84 - 155 2.3e-18 Biotin-requiring enzyme
E3_binding PF02817 188 - 223 1.5e-12 e3 binding domain
2-oxoacid_dh PF00198 266 - 386 6.3e-33 2-oxoacid dehydrogenases acyltransferase (catalytic domain)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 508
AccII CGCG 2 cut(s) 828, 1171
AciI CCGC 2 cut(s) 28, 1171
AclWI GGATC 1 cut(s) 637
AcoI YGGCCR 1 cut(s) 43
AcsI RAATTY 4 cut(s) 165, 450, 734, 1320
AcuI CTGAAG 2 cut(s) 753, 1230
AfiI CCNNNNNNNGG 3 cut(s) 48, 161, 508
AflII CTTAAG 1 cut(s) 668
AgeI ACCGGT 1 cut(s) 48
AgsI TTSAA 6 cut(s) 198, 356, 460, 698, 948, 993
AjiI CACGTC 1 cut(s) 498
AjnI CCWGG 1 cut(s) 424
AloI GAACNNNNNNTCC 2 cut(s) 1255, 1287
AluBI AGCT 7 cut(s) 773, 779, 913, 1165, 1201, 1253, 1471
AluI AGCT 7 cut(s) 773, 779, 913, 1165, 1201, 1253, 1471
Alw26I GTCTC 2 cut(s) 43, 1140
AlwI GGATC 1 cut(s) 637
Ama87I CYCGRG 1 cut(s) 715
AoxI GGCC 2 cut(s) 43, 1205
ApeKI GCWGC 2 cut(s) 854, 1471
ApoI RAATTY 4 cut(s) 165, 450, 734, 1320
ArsI GACNNNNNNTTYG 2 cut(s) 648, 680
AseI ATTAAT 2 cut(s) 977, 1454
AsiGI ACCGGT 1 cut(s) 48
Asp700I GAANNNNTTC 1 cut(s) 333
AspLEI GCGC 3 cut(s) 828, 830, 1394
AsuHPI GGTGA 5 cut(s) 226, 281, 329, 440, 647
AvaI CYCGRG 1 cut(s) 715
BbsI GAAGAC 2 cut(s) 96, 1218
BbvI GCAGC 2 cut(s) 841, 1458
BccI CCATC 5 cut(s) 73, 635, 979, 1151, 1343
BceAI ACGGC 1 cut(s) 372
BciT130I CCWGG 1 cut(s) 426
BciVI GTATCC 1 cut(s) 144
BclI TGATCA 2 cut(s) 319, 1396
BcoDI GTCTC 2 cut(s) 43, 1140
BfaI CTAG 3 cut(s) 527, 723, 1106
BfoI RGCGCY 1 cut(s) 1395
BfrI CTTAAG 1 cut(s) 668
BfuI GTATCC 1 cut(s) 144
BisI GCNGC 2 cut(s) 855, 1472
BlsI GCNGC 2 cut(s) 856, 1473
Bme1390I CCNGG 1 cut(s) 426
BmeT110I CYCGRG 1 cut(s) 715
BmgBI CACGTC 1 cut(s) 498
BmiI GGNNCC 4 cut(s) 486, 587, 1066, 1332
BmrFI CCNGG 1 cut(s) 426
BpiI GAAGAC 2 cut(s) 96, 1218
BpmI CTGGAG 3 cut(s) 40, 801, 1242
Bpu10I CCTNAGC 1 cut(s) 1202
BpuEI CTTGAG 2 cut(s) 832, 1067
BsaI GGTCTC 1 cut(s) 43
BsaJI CCNNGG 3 cut(s) 488, 625, 1086
BsaWI WCCGGW 1 cut(s) 48
BsaXI ACNNNNNCTCC 2 cut(s) 1407, 1437
Bsc4I CCNNNNNNNGG 3 cut(s) 48, 161, 508
Bse118I RCCGGY 2 cut(s) 48, 73
Bse1I ACTGG 1 cut(s) 271
Bse3DI GCAATG 3 cut(s) 276, 837, 904
BseBI CCWGG 1 cut(s) 426
BseDI CCNNGG 3 cut(s) 488, 625, 1086
BseLI CCNNNNNNNGG 3 cut(s) 48, 161, 508
BseMI GCAATG 3 cut(s) 276, 837, 904
BseMII CTCAG 3 cut(s) 273, 471, 1026
BseNI ACTGG 1 cut(s) 271
BsePI GCGCGC 1 cut(s) 826
BseRI GAGGAG 3 cut(s) 703, 899, 1052
BseXI GCAGC 2 cut(s) 841, 1458
BsgI GTGCAG 1 cut(s) 579
Bsh1236I CGCG 2 cut(s) 828, 1171
BshFI GGCC 2 cut(s) 45, 1207
BshTI ACCGGT 1 cut(s) 48
BsiHKCI CYCGRG 1 cut(s) 715
BsiSI CCGG 3 cut(s) 42, 49, 74
BslI CCNNNNNNNGG 3 cut(s) 48, 161, 508
BsmAI GTCTC 2 cut(s) 43, 1140
BsnI GGCC 2 cut(s) 45, 1207
Bso31I GGTCTC 1 cut(s) 43
BsoBI CYCGRG 1 cut(s) 715
Bsp143I GATC 3 cut(s) 319, 629, 1396
Bsp19I CCATGG 2 cut(s) 625, 1086
BspACI CCGC 2 cut(s) 28, 1171
BspANI GGCC 2 cut(s) 45, 1207
BspCNI CTCAG 3 cut(s) 274, 472, 1027
BspFNI CGCG 2 cut(s) 828, 1171
BspLI GGNNCC 4 cut(s) 486, 587, 1066, 1332
BspPI GGATC 1 cut(s) 637
BspTI CTTAAG 1 cut(s) 668
BspTNI GGTCTC 1 cut(s) 43
BsrDI GCAATG 3 cut(s) 276, 837, 904
BsrFI RCCGGY 2 cut(s) 48, 73
BsrI ACTGG 1 cut(s) 271
BssAI RCCGGY 2 cut(s) 48, 73
BssECI CCNNGG 3 cut(s) 488, 625, 1086
BssHII GCGCGC 1 cut(s) 826
BssMI GATC 3 cut(s) 319, 629, 1396
BssT1I CCWWGG 3 cut(s) 488, 625, 1086
Bst2UI CCWGG 1 cut(s) 426
Bst4CI ACNGT 4 cut(s) 805, 1025, 1381, 1423
Bst6I CTCTTC 5 cut(s) 176, 394, 680, 744, 1284
BstAFI CTTAAG 1 cut(s) 668
BstAPI GCANNNNNTGC 1 cut(s) 1424
BstC8I GCNNGC 5 cut(s) 26, 75, 370, 765, 828
BstDEI CTNAG 5 cut(s) 282, 480, 1035, 1202, 1238
BstDSI CCRYGG 2 cut(s) 625, 1086
BstFNI CGCG 2 cut(s) 828, 1171
BstH2I RGCGCY 1 cut(s) 1395
BstHHI GCGC 3 cut(s) 828, 830, 1394
BstKTI GATC 3 cut(s) 322, 632, 1399
BstMAI GTCTC 2 cut(s) 43, 1140
BstMBI GATC 3 cut(s) 319, 629, 1396
BstMWI GCNNNNNNNGC 4 cut(s) 825, 1307, 1424, 1480
BstNI CCWGG 1 cut(s) 426
BstNSI RCATGY 1 cut(s) 767
BstSCI CCNGG 1 cut(s) 424
BstUI CGCG 2 cut(s) 828, 1171
BstV1I GCAGC 2 cut(s) 841, 1458
BstV2I GAAGAC 2 cut(s) 96, 1218
BstX2I RGATCY 1 cut(s) 629
BstXI CCANNNNNNTGG 1 cut(s) 632
BstYI RGATCY 1 cut(s) 629
BsuI GTATCC 1 cut(s) 144
BsuRI GGCC 2 cut(s) 45, 1207
BtgI CCRYGG 2 cut(s) 625, 1086
BtgZI GCGATG 1 cut(s) 92
BtrI CACGTC 1 cut(s) 498
BtsIMutI CAGTG 1 cut(s) 1032
Cac8I GCNNGC 5 cut(s) 26, 75, 370, 765, 828
CfoI GCGC 3 cut(s) 828, 830, 1394
Cfr10I RCCGGY 2 cut(s) 48, 73
CseI GACGC 1 cut(s) 1356
CspAI ACCGGT 1 cut(s) 48
CviAII CATG 6 cut(s) 86, 626, 764, 1087, 1147, 1477
DdeI CTNAG 5 cut(s) 282, 480, 1035, 1202, 1238
DpnI GATC 3 cut(s) 321, 631, 1398
DpnII GATC 3 cut(s) 319, 629, 1396
EaeI YGGCCR 1 cut(s) 43
Eam1104I CTCTTC 5 cut(s) 176, 394, 680, 744, 1284
EarI CTCTTC 5 cut(s) 176, 394, 680, 744, 1284
Eco130I CCWWGG 3 cut(s) 488, 625, 1086
Eco147I AGGCCT 1 cut(s) 1207
Eco31I GGTCTC 1 cut(s) 43
Eco32I GATATC 1 cut(s) 613
Eco57I CTGAAG 2 cut(s) 753, 1230
Eco88I CYCGRG 1 cut(s) 715
EcoRI GAATTC 1 cut(s) 1320
EcoRII CCWGG 1 cut(s) 424
EcoRV GATATC 1 cut(s) 613
EcoT14I CCWWGG 3 cut(s) 488, 625, 1086
ErhI CCWWGG 3 cut(s) 488, 625, 1086
FaeI CATG 6 cut(s) 89, 629, 767, 1090, 1150, 1480
FalI AAGNNNNNCTT 2 cut(s) 651, 683
FatI CATG 6 cut(s) 85, 625, 763, 1086, 1146, 1476
FauI CCCGC 1 cut(s) 21
FauNDI CATATG 2 cut(s) 1099, 1485
FbaI TGATCA 2 cut(s) 319, 1396
Fnu4HI GCNGC 2 cut(s) 855, 1472
Fsp4HI GCNGC 2 cut(s) 855, 1472
FspBI CTAG 3 cut(s) 527, 723, 1106
GlaI GCGC 3 cut(s) 827, 829, 1393
GluI GCNGC 2 cut(s) 855, 1472
GsuI CTGGAG 3 cut(s) 40, 801, 1242
HaeII RGCGCY 1 cut(s) 1395
HaeIII GGCC 2 cut(s) 45, 1207
HapII CCGG 3 cut(s) 42, 49, 74
HgaI GACGC 1 cut(s) 1356
HhaI GCGC 3 cut(s) 828, 830, 1394
Hin1II CATG 6 cut(s) 89, 629, 767, 1090, 1150, 1480
Hin6I GCGC 3 cut(s) 826, 828, 1392
HinP1I GCGC 3 cut(s) 826, 828, 1392
HindIII AAGCTT 1 cut(s) 1199
HpaII CCGG 3 cut(s) 42, 49, 74
HphI GGTGA 5 cut(s) 226, 281, 329, 440, 647
Hpy166II GTNNAC 2 cut(s) 290, 1021
Hpy188I TCNGA 6 cut(s) 481, 535, 730, 943, 1079, 1326
Hpy188III TCNNGA 6 cut(s) 19, 162, 741, 982, 1221, 1466
Hpy8I GTNNAC 2 cut(s) 290, 1021
HpyAV CCTTC 3 cut(s) 266, 977, 1321
HpyCH4III ACNGT 4 cut(s) 805, 1025, 1381, 1423
HpyCH4IV ACGT 1 cut(s) 497
HpyF10VI GCNNNNNNNGC 4 cut(s) 825, 1307, 1424, 1480
HpyF3I CTNAG 5 cut(s) 282, 480, 1035, 1202, 1238
HpySE526I ACGT 1 cut(s) 497
Hsp92II CATG 6 cut(s) 89, 629, 767, 1090, 1150, 1480
HspAI GCGC 3 cut(s) 826, 828, 1392
KroI GCCGGC 1 cut(s) 73
KroNI GCCGGC 1 cut(s) 75
Ksp22I TGATCA 2 cut(s) 319, 1396
Kzo9I GATC 3 cut(s) 319, 629, 1396
LmnI GCTCC 4 cut(s) 21, 1162, 1250, 1415
Lsp1109I GCAGC 2 cut(s) 841, 1458
MaeI CTAG 3 cut(s) 527, 723, 1106
MaeII ACGT 1 cut(s) 497
MaeIII GTNAC 8 cut(s) 359, 428, 522, 635, 755, 805, 1041, 1173
MalI GATC 3 cut(s) 321, 631, 1398
MboI GATC 3 cut(s) 319, 629, 1396
MfeI CAATTG 2 cut(s) 1181, 1311
MflI RGATCY 1 cut(s) 629
MlyI GAGTC 1 cut(s) 1049
MmeI TCCRAC 1 cut(s) 424
MreI CGCCGGCG 1 cut(s) 73
MroNI GCCGGC 1 cut(s) 73
MroXI GAANNNNTTC 1 cut(s) 333
MseI TTAA 6 cut(s) 297, 669, 954, 977, 1383, 1454
MspCI CTTAAG 1 cut(s) 668
MspI CCGG 3 cut(s) 42, 49, 74
MspR9I CCNGG 1 cut(s) 426
MunI CAATTG 2 cut(s) 1181, 1311
MvaI CCWGG 1 cut(s) 426
MvnI CGCG 2 cut(s) 828, 1171
MwoI GCNNNNNNNGC 4 cut(s) 825, 1307, 1424, 1480
NaeI GCCGGC 1 cut(s) 75
NcoI CCATGG 2 cut(s) 625, 1086
NdeI CATATG 2 cut(s) 1099, 1485
NdeII GATC 3 cut(s) 319, 629, 1396
NgoMIV GCCGGC 1 cut(s) 73
NlaIII CATG 6 cut(s) 89, 629, 767, 1090, 1150, 1480
NlaIV GGNNCC 4 cut(s) 486, 587, 1066, 1332
NmuCI GTSAC 5 cut(s) 359, 428, 522, 635, 1041
NspI RCATGY 1 cut(s) 767
PaeI GCATGC 1 cut(s) 767
PaeR7I CTCGAG 1 cut(s) 715
PauI GCGCGC 1 cut(s) 826
PceI AGGCCT 1 cut(s) 1207
PdiI GCCGGC 1 cut(s) 75
PdmI GAANNNNTTC 1 cut(s) 333
PfeI GAWTC 9 cut(s) 476, 530, 690, 701, 920, 944, 1080, 1431, 1462
PflMI CCANNNNNTGG 1 cut(s) 508
PinAI ACCGGT 1 cut(s) 48
PkrI GCNGC 2 cut(s) 856, 1473
PleI GAGTC 1 cut(s) 1048
PpsI GAGTC 1 cut(s) 1048
PshBI ATTAAT 2 cut(s) 977, 1454
Psp6I CCWGG 1 cut(s) 424
PspGI CCWGG 1 cut(s) 424
PspN4I GGNNCC 4 cut(s) 486, 587, 1066, 1332
PspXI VCTCGAGB 1 cut(s) 715
PsuI RGATCY 1 cut(s) 629
PteI GCGCGC 1 cut(s) 826
SaqAI TTAA 6 cut(s) 297, 669, 954, 977, 1383, 1454
SatI GCNGC 2 cut(s) 855, 1472
Sau3AI GATC 3 cut(s) 319, 629, 1396
SchI GAGTC 1 cut(s) 1049
ScrFI CCNGG 1 cut(s) 426
Sfr274I CTCGAG 1 cut(s) 715
SgrAI CRCCGGYG 2 cut(s) 48, 73
SlaI CTCGAG 1 cut(s) 715
SmlI CTYRAG 4 cut(s) 668, 715, 811, 1046
SmoI CTYRAG 4 cut(s) 668, 715, 811, 1046
SphI GCATGC 1 cut(s) 767
SseBI AGGCCT 1 cut(s) 1207
SsiI CCGC 2 cut(s) 28, 1171
SspI AATATT 1 cut(s) 1246
SspMI CTAG 3 cut(s) 527, 723, 1106
StuI AGGCCT 1 cut(s) 1207
StyD4I CCNGG 1 cut(s) 424
StyI CCWWGG 3 cut(s) 488, 625, 1086
TaaI ACNGT 4 cut(s) 805, 1025, 1381, 1423
TaiI ACGT 1 cut(s) 500
TaqI TCGA 2 cut(s) 327, 716
TfiI GAWTC 9 cut(s) 476, 530, 690, 701, 920, 944, 1080, 1431, 1462
Tru1I TTAA 6 cut(s) 297, 669, 954, 977, 1383, 1454
Tru9I TTAA 6 cut(s) 297, 669, 954, 977, 1383, 1454
TscAI CASTG 1 cut(s) 1039
TseFI GTSAC 5 cut(s) 359, 428, 522, 635, 1041
TseI GCWGC 2 cut(s) 854, 1471
Tsp45I GTSAC 5 cut(s) 359, 428, 522, 635, 1041
TspDTI ATGAA 6 cut(s) 102, 633, 693, 747, 807, 863
TspGWI ACGGA 1 cut(s) 1428
TspRI CASTG 1 cut(s) 1039
Van91I CCANNNNNTGG 1 cut(s) 508
Vha464I CTTAAG 1 cut(s) 668
VspI ATTAAT 2 cut(s) 977, 1454
XapI RAATTY 4 cut(s) 165, 450, 734, 1320
XceI RCATGY 1 cut(s) 767
XhoI CTCGAG 1 cut(s) 715
XmnI GAANNNNTTC 1 cut(s) 333
XspI CTAG 3 cut(s) 527, 723, 1106
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.