Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0007897

Physical Location & Seq

Genomic Coordinates Forward (+)

45572517 .. 45573263

Gene Structure 747 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG244100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGATTGGTAGGAGGATCTGGAGCAAGCGGGCTTGGGTCACCGGCCACCGATGGCTCTGTTCGCGCACTGCTCCGGGCCTATCGCCGGCGACGGTGCGCTCAGATCACACCTCTCTATTTCGTGTATTCTCATCTTCCACCTCATTTCGATATGTTGATGGCATACCCAAATCTAGCATTGCTCATCATGTGAAGAGGAGCTGGTGTTCGAGTCAGGCTCAGGCGTCCAGTGATGTAACTAGTGGTAGTGGTATAGTTGATGTGCCGTTGGCTCAAACCGGTGAAGGCATTGCTGAGTGTGAACTCCTCAAATGGTTTGTGAAAGAGGGTGATCAAGTGGAAGCCTTTCAGCCAATTTGTGAGGTTCAAAGTGACAAAGCAACGATTGAGATAACAAGCCGTTATCAAGGAAGAGTTGCTCAGATTCACTACGTTCCCGGTGACATTGTGAAGGTGAGAACATGTAATGCGCCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004147 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005947 GO:0006950 GO:0007154 GO:0008150 GO:0008270 GO:0009267 GO:0009295 GO:0009314 GO:0009416 GO:0009605 GO:0009628 GO:0009642 GO:0009646 GO:0009743 GO:0009744 GO:0009987 GO:0009991 GO:0010033 GO:0016407 GO:0016417 GO:0016740 GO:0016746 GO:0016747 GO:0019899 GO:0030062 GO:0030523 GO:0031625 GO:0031667 GO:0031668 GO:0031669 GO:0031974 GO:0032991 GO:0033554 GO:0034285 GO:0042221 GO:0042594 GO:0042645 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043617 GO:0044389 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045239 GO:0045240 GO:0046872 GO:0046914 GO:0050896 GO:0051716 GO:0070013 GO:0071496 GO:0098798 GO:1901700 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00280 ko00640 ko01100 ko01110 ko01130 map00280 map00640 map01100 map01110 map01130

Pfam Domains

Protein Families

2-oxoacid_dh Biotin_lipoyl E3_binding

Protein Analysis

158

Amino Acids

17.45

Weight (kDa)

9.12

Isoelectric Point (pI)

48.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Biotin_lipoyl	PF00364	88 - 152	8.1e-17	Biotin-requiring enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0007897)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06850 AT3G06850
fragaria_vesca	FvH4_4g18561 FvH4_4g18561 FvH4_4g18561
malus_domestica	MD13G1165700.v1.1
prunus_persica	Prupe.1G132500_v2.0.a1
pyrus_communis	pycom13g14180 pycom16g14020
rosa_chinensis	RchiOBHm_Chr4g0423151
rosa_multiflora	Rmu_sc0000744.1_g000002 Rmu_sc0000744.1_g000004 Rmu_sc0008829.1_g000001 Rmu_sc0027756.1_g000002
rosa_roxburghii	Rroxscaffold_5G00365320
rosa_rugosa	Rorug04G0184700 Rorug04G0184800 Rorug04G0184800
rosa_samantha	Rh4AG244200 Rh4BG249400 Rh4CG258500 Rh4DG244100 Rh4DG244200
rosa_wichuraiana	Rw4G021040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	64
AciI	CCGC	1 cut(s)	28
AclWI	GGATC	1 cut(s)	23
AcoI	YGGCCR	1 cut(s)	43
AcyI	GRCGYC	1 cut(s)	224
AfiI	CCNNNNNNNGG	1 cut(s)	85
AflIII	ACRYGT	1 cut(s)	461
AgeI	ACCGGT	1 cut(s)	278
AgsI	TTSAA	1 cut(s)	368
AhlI	ACTAGT	1 cut(s)	239
AloI	GAACNNNNNNTCC	2 cut(s)	190, 222
AluBI	AGCT	1 cut(s)	201
AluI	AGCT	1 cut(s)	201
AlwI	GGATC	1 cut(s)	23
AoxI	GGCC	2 cut(s)	43, 76
AsiGI	ACCGGT	1 cut(s)	278
Asp700I	GAANNNNTTC	1 cut(s)	345
AspLEI	GCGC	3 cut(s)	66, 99, 472
AspS9I	GGNCC	1 cut(s)	76
AsuC2I	CCSGG	2 cut(s)	75, 438
AsuHPI	GGTGA	5 cut(s)	31, 293, 341, 452, 466
BccI	CCATC	2 cut(s)	45, 152
BceAI	ACGGC	2 cut(s)	250, 384
BclI	TGATCA	1 cut(s)	331
BcnI	CCSGG	2 cut(s)	75, 438
BcuI	ACTAGT	1 cut(s)	239
BfaI	CTAG	2 cut(s)	174, 240
Bme1390I	CCNGG	2 cut(s)	75, 438
BmgT120I	GGNCC	1 cut(s)	76
BmrFI	CCNGG	2 cut(s)	75, 438
BplI	GAGNNNNNCTC	2 cut(s)	202, 234
BpmI	CTGGAG	1 cut(s)	40
Bpu10I	CCTNAGC	1 cut(s)	219
BpuMI	CCSGG	2 cut(s)	75, 438
BsaHI	GRCGYC	1 cut(s)	224
BsaWI	WCCGGW	1 cut(s)	278
BsaXI	ACNNNNNCTCC	2 cut(s)	190, 220
Bsc4I	CCNNNNNNNGG	1 cut(s)	85
Bse118I	RCCGGY	3 cut(s)	41, 85, 278
Bse1I	ACTGG	1 cut(s)	228
Bse3DI	GCAATG	2 cut(s)	177, 288
BseLI	CCNNNNNNNGG	1 cut(s)	85
BseMI	GCAATG	2 cut(s)	177, 288
BseMII	CTCAG	4 cut(s)	114, 233, 285, 434
BseNI	ACTGG	1 cut(s)	228
BseRI	GAGGAG	2 cut(s)	211, 296
Bsh1236I	CGCG	1 cut(s)	64
BshFI	GGCC	2 cut(s)	45, 78
BshTI	ACCGGT	1 cut(s)	278
BsiSI	CCGG	5 cut(s)	42, 74, 86, 279, 438
BslI	CCNNNNNNNGG	1 cut(s)	85
BsnI	GGCC	2 cut(s)	45, 78
Bsp143I	GATC	3 cut(s)	15, 103, 331
BspACI	CCGC	1 cut(s)	28
BspANI	GGCC	2 cut(s)	45, 78
BspCNI	CTCAG	4 cut(s)	113, 232, 286, 433
BspFNI	CGCG	1 cut(s)	64
BspPI	GGATC	1 cut(s)	23
BsrDI	GCAATG	2 cut(s)	177, 288
BsrFI	RCCGGY	3 cut(s)	41, 85, 278
BsrI	ACTGG	1 cut(s)	228
BssAI	RCCGGY	3 cut(s)	41, 85, 278
BssMI	GATC	3 cut(s)	15, 103, 331
BssNI	GRCGYC	1 cut(s)	224
Bst4CI	ACNGT	1 cut(s)	94
Bst6I	CTCTTC	2 cut(s)	188, 406
BstACI	GRCGYC	1 cut(s)	224
BstC8I	GCNNGC	3 cut(s)	26, 30, 87
BstDEI	CTNAG	5 cut(s)	100, 219, 294, 420, 474
BstEII	GGTNACC	1 cut(s)	37
BstFNI	CGCG	1 cut(s)	64
BstHHI	GCGC	3 cut(s)	66, 99, 472
BstKTI	GATC	3 cut(s)	18, 106, 334
BstMBI	GATC	3 cut(s)	15, 103, 331
BstMWI	GCNNNNNNNGC	1 cut(s)	61
BstNSI	RCATGY	1 cut(s)	465
BstPI	GGTNACC	1 cut(s)	37
BstSCI	CCNGG	2 cut(s)	73, 436
BstUI	CGCG	1 cut(s)	64
BstX2I	RGATCY	1 cut(s)	15
BstYI	RGATCY	1 cut(s)	15
BsuRI	GGCC	2 cut(s)	45, 78
BtsI	GCAGTG	1 cut(s)	66
BtsIMutI	CAGTG	2 cut(s)	66, 235
Cac8I	GCNNGC	3 cut(s)	26, 30, 87
CfoI	GCGC	3 cut(s)	66, 99, 472
Cfr10I	RCCGGY	3 cut(s)	41, 85, 278
Cfr13I	GGNCC	1 cut(s)	76
CseI	GACGC	1 cut(s)	213
CspAI	ACCGGT	1 cut(s)	278
CviAII	CATG	2 cut(s)	188, 462
DdeI	CTNAG	5 cut(s)	100, 219, 294, 420, 474
DpnI	GATC	3 cut(s)	17, 105, 333
DpnII	GATC	3 cut(s)	15, 103, 331
EaeI	YGGCCR	1 cut(s)	43
Eam1104I	CTCTTC	2 cut(s)	188, 406
EarI	CTCTTC	2 cut(s)	188, 406
Eco91I	GGTNACC	1 cut(s)	37
EcoO65I	GGTNACC	1 cut(s)	37
FaeI	CATG	2 cut(s)	191, 465
FaiI	YATR	5 cut(s)	153, 164, 189, 254, 463
FatI	CATG	2 cut(s)	187, 461
FauI	CCCGC	1 cut(s)	21
FbaI	TGATCA	1 cut(s)	331
FspBI	CTAG	2 cut(s)	174, 240
GlaI	GCGC	3 cut(s)	65, 98, 471
GsuI	CTGGAG	1 cut(s)	40
HaeIII	GGCC	2 cut(s)	45, 78
HapII	CCGG	5 cut(s)	42, 74, 86, 279, 438
HgaI	GACGC	1 cut(s)	213
HhaI	GCGC	3 cut(s)	66, 99, 472
Hin1I	GRCGYC	1 cut(s)	224
Hin1II	CATG	2 cut(s)	191, 465
Hin6I	GCGC	3 cut(s)	64, 97, 470
HinP1I	GCGC	3 cut(s)	64, 97, 470
HinfI	GANTC	2 cut(s)	211, 424
HpaII	CCGG	5 cut(s)	42, 74, 86, 279, 438
HphI	GGTGA	5 cut(s)	31, 293, 341, 452, 466
Hpy166II	GTNNAC	1 cut(s)	302
Hpy188I	TCNGA	2 cut(s)	103, 423
Hpy188III	TCNNGA	1 cut(s)	19
Hpy8I	GTNNAC	1 cut(s)	302
Hpy99I	CGWCG	1 cut(s)	94
HpyAV	CCTTC	2 cut(s)	278, 445
HpyCH4III	ACNGT	1 cut(s)	94
HpyCH4IV	ACGT	1 cut(s)	432
HpyF10VI	GCNNNNNNNGC	1 cut(s)	61
HpyF3I	CTNAG	5 cut(s)	100, 219, 294, 420, 474
HpySE526I	ACGT	1 cut(s)	432
Hsp92I	GRCGYC	1 cut(s)	224
Hsp92II	CATG	2 cut(s)	191, 465
HspAI	GCGC	3 cut(s)	64, 97, 470
KroI	GCCGGC	1 cut(s)	85
KroNI	GCCGGC	1 cut(s)	87
Ksp22I	TGATCA	1 cut(s)	331
Kzo9I	GATC	3 cut(s)	15, 103, 331
LmnI	GCTCC	3 cut(s)	21, 76, 198
MaeI	CTAG	2 cut(s)	174, 240
MaeII	ACGT	1 cut(s)	432
MaeIII	GTNAC	4 cut(s)	37, 235, 371, 440
MalI	GATC	3 cut(s)	17, 105, 333
MboI	GATC	3 cut(s)	15, 103, 331
MboII	GAAGA	3 cut(s)	126, 205, 423
MflI	RGATCY	1 cut(s)	15
MluCI	AATT	1 cut(s)	354
MlyI	GAGTC	1 cut(s)	220
MnlI	CCTC	7 cut(s)	6, 121, 151, 189, 317, 319, 355
MreI	CGCCGGCG	1 cut(s)	85
MroNI	GCCGGC	1 cut(s)	85
MroXI	GAANNNNTTC	1 cut(s)	345
MspI	CCGG	5 cut(s)	42, 74, 86, 279, 438
MspR9I	CCNGG	2 cut(s)	75, 438
MvnI	CGCG	1 cut(s)	64
MwoI	GCNNNNNNNGC	1 cut(s)	61
NaeI	GCCGGC	1 cut(s)	87
NciI	CCSGG	2 cut(s)	75, 438
NdeII	GATC	3 cut(s)	15, 103, 331
NgoMIV	GCCGGC	1 cut(s)	85
NlaIII	CATG	2 cut(s)	191, 465
NmuCI	GTSAC	3 cut(s)	37, 371, 440
NspI	RCATGY	1 cut(s)	465
PciI	ACATGT	1 cut(s)	461
PdiI	GCCGGC	1 cut(s)	87
PdmI	GAANNNNTTC	1 cut(s)	345
PfeI	GAWTC	1 cut(s)	424
PinAI	ACCGGT	1 cut(s)	278
PleI	GAGTC	1 cut(s)	219
PpsI	GAGTC	1 cut(s)	219
PscI	ACATGT	1 cut(s)	461
PspEI	GGTNACC	1 cut(s)	37
PspPI	GGNCC	1 cut(s)	76
PsuI	RGATCY	1 cut(s)	15
Sau3AI	GATC	3 cut(s)	15, 103, 331
Sau96I	GGNCC	1 cut(s)	76
SchI	GAGTC	1 cut(s)	220
ScrFI	CCNGG	2 cut(s)	75, 438
SetI	ASST	6 cut(s)	113, 143, 203, 366, 435, 456
SgrAI	CRCCGGYG	1 cut(s)	85
SpeI	ACTAGT	1 cut(s)	239
Sse9I	AATT	1 cut(s)	354
SsiI	CCGC	1 cut(s)	28
SspMI	CTAG	2 cut(s)	174, 240
StyD4I	CCNGG	2 cut(s)	73, 436
TaaI	ACNGT	1 cut(s)	94
TaiI	ACGT	1 cut(s)	435
TaqI	TCGA	2 cut(s)	148, 209
TasI	AATT	1 cut(s)	354
TfiI	GAWTC	1 cut(s)	424
TscAI	CASTG	2 cut(s)	73, 235
TseFI	GTSAC	3 cut(s)	37, 371, 440
Tsp45I	GTSAC	3 cut(s)	37, 371, 440
TspRI	CASTG	2 cut(s)	73, 235
XceI	RCATGY	1 cut(s)	465
XmnI	GAANNNNTTC	1 cut(s)	345
XspI	CTAG	2 cut(s)	174, 240

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.