Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0027756.1

Orthogroup ID

OG0007897

Physical Location & Seq

Genomic Coordinates Reverse (-)

2825 .. 6457

Gene Structure 3633 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0027756.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

atgattggtaggaggatctggagcaagcgggcttgggtcaccggccaccgatggctctgttcgcgcactgctccgggcctatcgccggcgacggtgtgctcagatcacacctctctatttcgtgtattctcatcttccacctcatttcgatatgttgatgggatacccaaattgttgcagtctagcattactcatcatgtgaagaggagctggtgttcgagtcaggctcaggcgtccagtgatgtaactagtggtagtggtatagttgatgtgccgttggctcaaaccggtgaaggcattgctgagtgtgaactcctcaaatggtttgtgaaagagggtgatcaagtggaagcctttcagccaatttgtgaggttcaaagtgacaaagcaacgattgagataacaagccgttatcaaggaagagttgctcagattcactacgttcctggtgacattgtgaaggttggagaaattcttttgaaaatgatggttgaggaatctgagataacaaagaagctttcacggttactacaattggcattggaaaacaagcttaggcctgaagatatatctggaggaacaattactctaagtaatattggggctattggtgggaagtatggttcccctcttctcaacttgccagaggttgccattattgcaattggacgaattcagaaggttccacaatatgcagatgatggaagtgtatatcctgcatcagttatgacggttaatataggcgctgatcatagagtgctggacggagcaactgttgcccgattctgtaaagagtggaaacaattaatagagaatccagagctgctcatgttgcacatgacatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004147 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005947 GO:0006950 GO:0007154 GO:0008150 GO:0008270 GO:0009267 GO:0009295 GO:0009314 GO:0009416 GO:0009605 GO:0009628 GO:0009642 GO:0009646 GO:0009743 GO:0009744 GO:0009987 GO:0009991 GO:0010033 GO:0016407 GO:0016417 GO:0016740 GO:0016746 GO:0016747 GO:0019899 GO:0030062 GO:0030523 GO:0031625 GO:0031667 GO:0031668 GO:0031669 GO:0031974 GO:0032991 GO:0033554 GO:0034285 GO:0042221 GO:0042594 GO:0042645 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043617 GO:0044389 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045239 GO:0045240 GO:0046872 GO:0046914 GO:0050896 GO:0051716 GO:0070013 GO:0071496 GO:0098798 GO:1901700 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00280 ko00640 ko01100 ko01110 ko01130 map00280 map00640 map01100 map01110 map01130

Pfam Domains

Protein Families

2-oxoacid_dh Biotin_lipoyl E3_binding

Protein Analysis

281

Amino Acids

30.89

Weight (kDa)

7.65

Isoelectric Point (pI)

50.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007897)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06850 AT3G06850
fragaria_vesca	FvH4_4g18561 FvH4_4g18561 FvH4_4g18561
malus_domestica	MD13G1165700.v1.1
prunus_persica	Prupe.1G132500_v2.0.a1
pyrus_communis	pycom13g14180 pycom16g14020
rosa_chinensis	RchiOBHm_Chr4g0423151
rosa_multiflora	Rmu_sc0000744.1_g000002 Rmu_sc0000744.1_g000004 Rmu_sc0008829.1_g000001 Rmu_sc0027756.1_g000002
rosa_roxburghii	Rroxscaffold_5G00365320
rosa_rugosa	Rorug04G0184700 Rorug04G0184800 Rorug04G0184800
rosa_samantha	Rh4AG244200 Rh4BG249400 Rh4CG258500 Rh4DG244100 Rh4DG244200
rosa_wichuraiana	Rw4G021040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	64
AciI	CCGC	1 cut(s)	28
AclWI	GGATC	1 cut(s)	23
AcoI	YGGCCR	1 cut(s)	43
AcsI	RAATTY	2 cut(s)	471, 672
AcuI	CTGAAG	1 cut(s)	582
AcyI	GRCGYC	1 cut(s)	233
AfiI	CCNNNNNNNGG	1 cut(s)	85
AgeI	ACCGGT	1 cut(s)	287
AgsI	TTSAA	2 cut(s)	377, 481
AhlI	ACTAGT	1 cut(s)	248
AjnI	CCWGG	1 cut(s)	445
AloI	GAACNNNNNNTCC	4 cut(s)	199, 231, 607, 639
AluBI	AGCT	4 cut(s)	210, 517, 553, 823
AluI	AGCT	4 cut(s)	210, 517, 553, 823
Alw21I	GWGCWC	1 cut(s)	101
AlwI	GGATC	1 cut(s)	23
AoxI	GGCC	3 cut(s)	43, 76, 557
ApeKI	GCWGC	1 cut(s)	823
ApoI	RAATTY	2 cut(s)	471, 672
AseI	ATTAAT	1 cut(s)	806
AsiGI	ACCGGT	1 cut(s)	287
Asp700I	GAANNNNTTC	1 cut(s)	354
AspLEI	GCGC	2 cut(s)	66, 746
AspS9I	GGNCC	1 cut(s)	76
AsuC2I	CCSGG	1 cut(s)	75
AsuHPI	GGTGA	4 cut(s)	31, 302, 350, 461
Bbv12I	GWGCWC	1 cut(s)	101
BbvI	GCAGC	1 cut(s)	810
BccI	CCATC	4 cut(s)	45, 152, 481, 695
BceAI	ACGGC	2 cut(s)	259, 393
BciT130I	CCWGG	1 cut(s)	447
BciVI	GTATCC	1 cut(s)	156
BclI	TGATCA	2 cut(s)	340, 748
BcnI	CCSGG	1 cut(s)	75
BcuI	ACTAGT	1 cut(s)	248
BfaI	CTAG	2 cut(s)	183, 249
BfoI	RGCGCY	1 cut(s)	747
BfuI	GTATCC	1 cut(s)	156
BisI	GCNGC	1 cut(s)	824
BlsI	GCNGC	1 cut(s)	825
Bme1390I	CCNGG	2 cut(s)	75, 447
BmgT120I	GGNCC	1 cut(s)	76
BmiI	GGNNCC	2 cut(s)	625, 684
BmrFI	CCNGG	2 cut(s)	75, 447
BmsI	GCATC	1 cut(s)	728
BplI	GAGNNNNNCTC	2 cut(s)	211, 243
BpmI	CTGGAG	2 cut(s)	40, 594
Bpu10I	CCTNAGC	2 cut(s)	228, 554
BpuMI	CCSGG	1 cut(s)	75
BsaHI	GRCGYC	1 cut(s)	233
BsaWI	WCCGGW	1 cut(s)	287
BsaXI	ACNNNNNCTCC	4 cut(s)	199, 229, 759, 789
Bsc4I	CCNNNNNNNGG	1 cut(s)	85
Bse118I	RCCGGY	3 cut(s)	41, 85, 287
Bse1I	ACTGG	1 cut(s)	237
Bse3DI	GCAATG	1 cut(s)	297
BseBI	CCWGG	1 cut(s)	447
BseLI	CCNNNNNNNGG	1 cut(s)	85
BseMI	GCAATG	1 cut(s)	297
BseMII	CTCAG	5 cut(s)	114, 242, 294, 443, 492
BseNI	ACTGG	1 cut(s)	237
BseRI	GAGGAG	2 cut(s)	220, 305
BseXI	GCAGC	1 cut(s)	810
Bsh1236I	CGCG	1 cut(s)	64
BshFI	GGCC	3 cut(s)	45, 78, 559
BshTI	ACCGGT	1 cut(s)	287
BsiHKAI	GWGCWC	1 cut(s)	101
BsiSI	CCGG	4 cut(s)	42, 74, 86, 288
BslI	CCNNNNNNNGG	1 cut(s)	85
BsnI	GGCC	3 cut(s)	45, 78, 559
Bsp1286I	GDGCHC	1 cut(s)	101
Bsp143I	GATC	4 cut(s)	15, 103, 340, 748
BspACI	CCGC	1 cut(s)	28
BspANI	GGCC	3 cut(s)	45, 78, 559
BspCNI	CTCAG	5 cut(s)	113, 241, 295, 442, 493
BspFNI	CGCG	1 cut(s)	64
BspLI	GGNNCC	2 cut(s)	625, 684
BspPI	GGATC	1 cut(s)	23
BsrDI	GCAATG	1 cut(s)	297
BsrFI	RCCGGY	3 cut(s)	41, 85, 287
BsrI	ACTGG	1 cut(s)	237
BssAI	RCCGGY	3 cut(s)	41, 85, 287
BssMI	GATC	4 cut(s)	15, 103, 340, 748
BssNI	GRCGYC	1 cut(s)	233
Bst2UI	CCWGG	1 cut(s)	447
Bst4CI	ACNGT	4 cut(s)	94, 525, 733, 775
Bst6I	CTCTTC	3 cut(s)	197, 415, 636
BstACI	GRCGYC	1 cut(s)	233
BstAPI	GCANNNNNTGC	1 cut(s)	776
BstC8I	GCNNGC	3 cut(s)	26, 30, 87
BstDEI	CTNAG	7 cut(s)	100, 228, 303, 429, 501, 554, 590
BstEII	GGTNACC	1 cut(s)	37
BstFNI	CGCG	1 cut(s)	64
BstH2I	RGCGCY	1 cut(s)	747
BstHHI	GCGC	2 cut(s)	66, 746
BstKTI	GATC	4 cut(s)	18, 106, 343, 751
BstMBI	GATC	4 cut(s)	15, 103, 340, 748
BstMWI	GCNNNNNNNGC	4 cut(s)	61, 659, 776, 832
BstNI	CCWGG	1 cut(s)	447
BstPI	GGTNACC	1 cut(s)	37
BstSCI	CCNGG	2 cut(s)	73, 445
BstUI	CGCG	1 cut(s)	64
BstV1I	GCAGC	1 cut(s)	810
BstX2I	RGATCY	1 cut(s)	15
BstYI	RGATCY	1 cut(s)	15
BsuI	GTATCC	1 cut(s)	156
BsuRI	GGCC	3 cut(s)	45, 78, 559
BtsI	GCAGTG	1 cut(s)	66
BtsIMutI	CAGTG	2 cut(s)	66, 244
Cac8I	GCNNGC	3 cut(s)	26, 30, 87
CfoI	GCGC	2 cut(s)	66, 746
Cfr10I	RCCGGY	3 cut(s)	41, 85, 287
Cfr13I	GGNCC	1 cut(s)	76
CseI	GACGC	1 cut(s)	222
CspAI	ACCGGT	1 cut(s)	287
CviAII	CATG	3 cut(s)	197, 829, 838
DdeI	CTNAG	7 cut(s)	100, 228, 303, 429, 501, 554, 590
DpnI	GATC	4 cut(s)	17, 105, 342, 750
DpnII	GATC	4 cut(s)	15, 103, 340, 748
EaeI	YGGCCR	1 cut(s)	43
Eam1104I	CTCTTC	3 cut(s)	197, 415, 636
EarI	CTCTTC	3 cut(s)	197, 415, 636
Eco147I	AGGCCT	1 cut(s)	559
Eco57I	CTGAAG	1 cut(s)	582
Eco91I	GGTNACC	1 cut(s)	37
EcoO65I	GGTNACC	1 cut(s)	37
EcoRI	GAATTC	1 cut(s)	672
EcoRII	CCWGG	1 cut(s)	445
FaeI	CATG	3 cut(s)	200, 832, 841
FatI	CATG	3 cut(s)	196, 828, 837
FauI	CCCGC	1 cut(s)	21
FbaI	TGATCA	2 cut(s)	340, 748
Fnu4HI	GCNGC	1 cut(s)	824
Fsp4HI	GCNGC	1 cut(s)	824
FspBI	CTAG	2 cut(s)	183, 249
GlaI	GCGC	2 cut(s)	65, 745
GluI	GCNGC	1 cut(s)	824
GsuI	CTGGAG	2 cut(s)	40, 594
HaeII	RGCGCY	1 cut(s)	747
HaeIII	GGCC	3 cut(s)	45, 78, 559
HapII	CCGG	4 cut(s)	42, 74, 86, 288
HgaI	GACGC	1 cut(s)	222
HhaI	GCGC	2 cut(s)	66, 746
Hin1I	GRCGYC	1 cut(s)	233
Hin1II	CATG	3 cut(s)	200, 832, 841
Hin6I	GCGC	2 cut(s)	64, 744
HinP1I	GCGC	2 cut(s)	64, 744
HindIII	AAGCTT	2 cut(s)	515, 551
HinfI	GANTC	5 cut(s)	220, 433, 497, 783, 814
HpaII	CCGG	4 cut(s)	42, 74, 86, 288
HphI	GGTGA	4 cut(s)	31, 302, 350, 461
Hpy166II	GTNNAC	1 cut(s)	311
Hpy188I	TCNGA	4 cut(s)	103, 432, 502, 678
Hpy188III	TCNNGA	3 cut(s)	19, 573, 818
Hpy8I	GTNNAC	1 cut(s)	311
Hpy99I	CGWCG	1 cut(s)	94
HpyAV	CCTTC	3 cut(s)	287, 454, 673
HpyCH4III	ACNGT	4 cut(s)	94, 525, 733, 775
HpyCH4IV	ACGT	1 cut(s)	441
HpyCH4V	TGCA	5 cut(s)	178, 662, 695, 719, 835
HpyF10VI	GCNNNNNNNGC	4 cut(s)	61, 659, 776, 832
HpyF3I	CTNAG	7 cut(s)	100, 228, 303, 429, 501, 554, 590
HpySE526I	ACGT	1 cut(s)	441
Hsp92I	GRCGYC	1 cut(s)	233
Hsp92II	CATG	3 cut(s)	200, 832, 841
HspAI	GCGC	2 cut(s)	64, 744
KroI	GCCGGC	1 cut(s)	85
KroNI	GCCGGC	1 cut(s)	87
Ksp22I	TGATCA	2 cut(s)	340, 748
Kzo9I	GATC	4 cut(s)	15, 103, 340, 748
LmnI	GCTCC	4 cut(s)	21, 76, 207, 767
Lsp1109I	GCAGC	1 cut(s)	810
LweI	GCATC	1 cut(s)	728
MaeI	CTAG	2 cut(s)	183, 249
MaeII	ACGT	1 cut(s)	441
MaeIII	GTNAC	5 cut(s)	37, 244, 380, 449, 525
MalI	GATC	4 cut(s)	17, 105, 342, 750
MboI	GATC	4 cut(s)	15, 103, 340, 748
MboII	GAAGA	5 cut(s)	126, 214, 432, 575, 623
MfeI	CAATTG	2 cut(s)	533, 663
MflI	RGATCY	1 cut(s)	15
MhlI	GDGCHC	1 cut(s)	101
MluCI	AATT	8 cut(s)	170, 363, 471, 533, 582, 663, 672, 803
MlyI	GAGTC	1 cut(s)	229
MmeI	TCCRAC	1 cut(s)	445
MreI	CGCCGGCG	1 cut(s)	85
MroNI	GCCGGC	1 cut(s)	85
MroXI	GAANNNNTTC	1 cut(s)	354
MseI	TTAA	2 cut(s)	735, 806
MspI	CCGG	4 cut(s)	42, 74, 86, 288
MspR9I	CCNGG	2 cut(s)	75, 447
MunI	CAATTG	2 cut(s)	533, 663
MvaI	CCWGG	1 cut(s)	447
MvnI	CGCG	1 cut(s)	64
MwoI	GCNNNNNNNGC	4 cut(s)	61, 659, 776, 832
NaeI	GCCGGC	1 cut(s)	87
NciI	CCSGG	1 cut(s)	75
NdeII	GATC	4 cut(s)	15, 103, 340, 748
NgoMIV	GCCGGC	1 cut(s)	85
NlaIII	CATG	3 cut(s)	200, 832, 841
NlaIV	GGNNCC	2 cut(s)	625, 684
NmuCI	GTSAC	3 cut(s)	37, 380, 449
PceI	AGGCCT	1 cut(s)	559
PdiI	GCCGGC	1 cut(s)	87
PdmI	GAANNNNTTC	1 cut(s)	354
PfeI	GAWTC	4 cut(s)	433, 497, 783, 814
PinAI	ACCGGT	1 cut(s)	287
PkrI	GCNGC	1 cut(s)	825
PleI	GAGTC	1 cut(s)	228
PpsI	GAGTC	1 cut(s)	228
PshBI	ATTAAT	1 cut(s)	806
Psp6I	CCWGG	1 cut(s)	445
PspEI	GGTNACC	1 cut(s)	37
PspGI	CCWGG	1 cut(s)	445
PspN4I	GGNNCC	2 cut(s)	625, 684
PspPI	GGNCC	1 cut(s)	76
PsuI	RGATCY	1 cut(s)	15
SaqAI	TTAA	2 cut(s)	735, 806
SatI	GCNGC	1 cut(s)	824
Sau3AI	GATC	4 cut(s)	15, 103, 340, 748
Sau96I	GGNCC	1 cut(s)	76
SchI	GAGTC	1 cut(s)	229
ScrFI	CCNGG	2 cut(s)	75, 447
SduI	GDGCHC	1 cut(s)	101
SfaNI	GCATC	1 cut(s)	728
SgrAI	CRCCGGYG	1 cut(s)	85
SpeI	ACTAGT	1 cut(s)	248
Sse9I	AATT	8 cut(s)	170, 363, 471, 533, 582, 663, 672, 803
SseBI	AGGCCT	1 cut(s)	559
SsiI	CCGC	1 cut(s)	28
SspI	AATATT	1 cut(s)	598
SspMI	CTAG	2 cut(s)	183, 249
StuI	AGGCCT	1 cut(s)	559
StyD4I	CCNGG	2 cut(s)	73, 445
TaaI	ACNGT	4 cut(s)	94, 525, 733, 775
TaiI	ACGT	1 cut(s)	444
TaqI	TCGA	2 cut(s)	148, 218
TasI	AATT	8 cut(s)	170, 363, 471, 533, 582, 663, 672, 803
TfiI	GAWTC	4 cut(s)	433, 497, 783, 814
Tru1I	TTAA	2 cut(s)	735, 806
Tru9I	TTAA	2 cut(s)	735, 806
TscAI	CASTG	2 cut(s)	73, 244
TseFI	GTSAC	3 cut(s)	37, 380, 449
TseI	GCWGC	1 cut(s)	823
Tsp45I	GTSAC	3 cut(s)	37, 380, 449
TspGWI	ACGGA	1 cut(s)	780
TspRI	CASTG	2 cut(s)	73, 244
VspI	ATTAAT	1 cut(s)	806
XapI	RAATTY	2 cut(s)	471, 672
XmnI	GAANNNNTTC	1 cut(s)	354
XspI	CTAG	2 cut(s)	183, 249

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.