Prupe.1G132500_v2.0.a1

Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
Physical Location & Seq
Reverse (-)
10484780 .. 10489136
4357 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G132500.1

Sequence Viewer

Length: 1530 bp
ATGATCGCTCGGCGGGCCTGGCACAAGCGGGCTTTGGTCTCCGGTCGCCGGTGGCTGTGTCCGTACACCTCTTCAGCTCCGTCGCCGGCGACGGTGCACTCGGGCCGCAGCCCTCCGTTTCGAGCGTTGACTTCCGAGCTTGTTGCATTCTCCACCGTCGCTTCCACTCCATTTCGCTTAGCTGATCCGATATCCAATTGTAGCGTTGCGTATAATGTGAAGAGCAGCTGGTTTTCAAGTCAACCAATGGCTGATGTTACAGCAGCTGGTAATGGCATAGTTGATGTACCATTGGCTCAAACTGGTGAAGGCATTGCTGAGTGTGAGCTCCTCAAATGGTTTGTGCAAGAGGGGGATCAAGTTGAAGAATTTCAGCCACTTTGTGAAGTTCAAAGTGACAAAGCAACCATTGAAATAACAAGCCGGTATCAAGGAAAGGTTAATCAGCTTCTCTACGTTCCCGGTGACATCGTTAAGGTTGGAGAAATTCTTTTAAAGATGGCCGTCGAGGAATCTCAGGTTCCAAAGCAGATTTCGGAGAATTTTGAAAACACCAAGTCTCTAGATTCTGAGCTGAACACTCAGAACATAGGTGGAGTTTTATCTACACCTCCTGTTCGGAATCTTGCAAAGCAATATGATATAGATATAAATGAAGTTGATGGAACTGGTAAAGATGGGAGAGTATTGAAAGGAGATGTCCTTAAATATGCTGCCCAGAAAGGAATCATTCAAGACCCATCTGCCTCTTTGAGTGCTAGTTCTGATAAAGTTTTGGGAGACGAAAAGAGTTACTCACATCCATCAGCTGAATCCGGATGTAATTATGATGATAAGACAGTTACCCTGAGGGGATTCCAACGAAGAATGGTTAAATCGATGAGTATGGCAGCAAAAGTTCCACATTTTCATTATGTTGAGGAGATAAAATGTGATGCACTTGTAGAGCTGAAACAGTCTTTCCAAAGTAATAACTCTGATTCAAATGTCAAGCACACGTTCCTTCCATTATTGATAAAGACACTTTCAATGGCCATGGGCAAATATCCGTTAATGAATAGTTGCTTCAATGAAGAGTCACTTGAGGTCATCCTCAAAGGTTCCCACAATATCGGAATTGCCATGGCTACTCCATATGGTCTAGTTGTGCCAATCATAAAGAATGTCCAGTCTCTTTCTATTTTGGAGATAACAAAGGAACTTTCACGGTTACAACAACTGGCATTGGAAAACAAGCTTAGGCCTGAAGATATATCTGGAGGAACAATAACTTTAAGTAATATTGGAGCAATTGGTGGGAAATACGGTTCGCCTCTGCTCAACTTGCCTGAGGTTGCCATAATTGCACTTGGGCGGATTCAGAAGGTTCCACAATTTGCAGATGACGGAAATGTATATCCTGTGTCAATTATGACGGTCAATATAGGGGCTGATCATAGAGTGCTGGATGGAGCAACTGTTGCGAGGTTTTGCAACGAGTGGAAACAATTTATACAGAATCCAGAGCTGGTCATGTTGCATATGAGATAG

Protein Analysis

510

Amino Acids

55.75

Weight (kDa)

6.19

Isoelectric Point (pI)

50.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 815
AciI CCGC 4 cut(s) 13, 28, 106, 1354
AclWI GGATC 2 cut(s) 179, 363
AcoI YGGCCR 2 cut(s) 501, 1032
AcsI RAATTY 3 cut(s) 368, 486, 541
AcuI CTGAAG 2 cut(s) 57, 1266
AdeI CACNNNGTG 1 cut(s) 383
AfaI GTAC 2 cut(s) 65, 288
AfiI CCNNNNNNNGG 1 cut(s) 48
AflIII ACRYGT 1 cut(s) 996
AjnI CCWGG 1 cut(s) 17
AjuI GAANNNNNNNTTGG 2 cut(s) 517, 549
AloI GAACNNNNNNTCC 2 cut(s) 1291, 1323
Alw21I GWGCWC 2 cut(s) 99, 330
Alw26I GTCTC 4 cut(s) 43, 564, 774, 1176
Alw44I GTGCAC 1 cut(s) 95
AlwI GGATC 2 cut(s) 179, 363
AlwNI CAGNNNCTG 1 cut(s) 266
Ama87I CYCGRG 1 cut(s) 100
Aor13HI TCCGGA 1 cut(s) 815
AoxI GGCC 5 cut(s) 15, 103, 501, 1032, 1241
ApaLI GTGCAC 1 cut(s) 95
ApeKI GCWGC 5 cut(s) 108, 225, 263, 713, 890
ApoI RAATTY 3 cut(s) 368, 486, 541
Asp700I GAANNNNTTC 1 cut(s) 369
AspS9I GGNCC 2 cut(s) 15, 103
AsuC2I CCSGG 1 cut(s) 462
AsuHPI GGTGA 2 cut(s) 317, 476
AvaI CYCGRG 1 cut(s) 100
AxyI CCTNAGG 2 cut(s) 848, 1329
BaeGI GKGCMC 1 cut(s) 99
BalI TGGCCA 1 cut(s) 1034
BanII GRGCYC 1 cut(s) 330
Bbv12I GWGCWC 2 cut(s) 99, 330
BbvI GCAGC 5 cut(s) 120, 237, 275, 700, 902
BccI CCATC 6 cut(s) 493, 656, 671, 748, 811, 1442
BceAI ACGGC 1 cut(s) 488
BcgI CGANNNNNNTGC 2 cut(s) 125, 159
BciT130I CCWGG 1 cut(s) 19
BclI TGATCA 1 cut(s) 1432
BcnI CCSGG 1 cut(s) 462
BcoDI GTCTC 4 cut(s) 43, 564, 774, 1176
BfaI CTAG 3 cut(s) 563, 759, 1142
BisI GCNGC 6 cut(s) 106, 109, 226, 264, 714, 891
BlpI GCTNAGC 1 cut(s) 178
BlsI GCNGC 6 cut(s) 107, 110, 227, 265, 715, 892
Bme1390I CCNGG 2 cut(s) 19, 462
BmeT110I CYCGRG 1 cut(s) 100
BmgT120I GGNCC 2 cut(s) 15, 103
BmiI GGNNCC 3 cut(s) 522, 1102, 1368
BmrFI CCNGG 2 cut(s) 19, 462
BmsI GCATC 1 cut(s) 925
BpmI CTGGAG 1 cut(s) 1278
Bpu10I CCTNAGC 1 cut(s) 1238
Bpu1102I GCTNAGC 1 cut(s) 178
BpuEI CTTGAG 1 cut(s) 1103
BpuMI CCSGG 1 cut(s) 462
Bsa29I ATCGAT 1 cut(s) 878
BsaI GGTCTC 1 cut(s) 43
BsaJI CCNNGG 2 cut(s) 1035, 1122
BsaWI WCCGGW 2 cut(s) 41, 815
BsaXI ACNNNNNCTCC 2 cut(s) 1443, 1473
Bsc4I CCNNNNNNNGG 1 cut(s) 48
Bse118I RCCGGY 3 cut(s) 48, 85, 423
Bse1I ACTGG 4 cut(s) 307, 673, 1168, 1224
Bse21I CCTNAGG 2 cut(s) 848, 1329
Bse3DI GCAATG 1 cut(s) 312
BseAI TCCGGA 1 cut(s) 815
BseBI CCWGG 1 cut(s) 19
BseCI ATCGAT 1 cut(s) 878
BseDI CCNNGG 2 cut(s) 1035, 1122
BseGI GGATG 4 cut(s) 799, 824, 1089, 1453
BseLI CCNNNNNNNGG 1 cut(s) 48
BseMI GCAATG 1 cut(s) 312
BseMII CTCAG 6 cut(s) 309, 530, 561, 596, 839, 1320
BseNI ACTGG 4 cut(s) 307, 673, 1168, 1224
BseRI GAGGAG 2 cut(s) 320, 935
BseSI GKGCMC 1 cut(s) 99
BseXI GCAGC 5 cut(s) 120, 237, 275, 700, 902
Bsh1285I CGRYCG 1 cut(s) 46
BshFI GGCC 5 cut(s) 17, 105, 503, 1034, 1243
BshVI ATCGAT 1 cut(s) 878
BsiEI CGRYCG 1 cut(s) 46
BsiHKAI GWGCWC 2 cut(s) 99, 330
BsiHKCI CYCGRG 1 cut(s) 100
BsiSI CCGG 6 cut(s) 42, 49, 86, 424, 462, 816
BslI CCNNNNNNNGG 1 cut(s) 48
BsmAI GTCTC 4 cut(s) 43, 564, 774, 1176
BsmBI CGTCTC 1 cut(s) 774
BsmI GAATGC 1 cut(s) 146
BsnI GGCC 5 cut(s) 17, 105, 503, 1034, 1243
Bso31I GGTCTC 1 cut(s) 43
BsoBI CYCGRG 1 cut(s) 100
Bsp1286I GDGCHC 2 cut(s) 99, 330
Bsp13I TCCGGA 1 cut(s) 815
Bsp143I GATC 4 cut(s) 3, 184, 355, 1432
Bsp1720I GCTNAGC 1 cut(s) 178
Bsp19I CCATGG 2 cut(s) 1035, 1122
BspACI CCGC 4 cut(s) 13, 28, 106, 1354
BspANI GGCC 5 cut(s) 17, 105, 503, 1034, 1243
BspCNI CTCAG 6 cut(s) 310, 529, 562, 595, 840, 1321
BspDI ATCGAT 1 cut(s) 878
BspEI TCCGGA 1 cut(s) 815
BspLI GGNNCC 3 cut(s) 522, 1102, 1368
BspPI GGATC 2 cut(s) 179, 363
BspQI GCTCTTC 1 cut(s) 215
BspTNI GGTCTC 1 cut(s) 43
BsrDI GCAATG 1 cut(s) 312
BsrFI RCCGGY 3 cut(s) 48, 85, 423
BsrI ACTGG 4 cut(s) 307, 673, 1168, 1224
BssAI RCCGGY 3 cut(s) 48, 85, 423
BssECI CCNNGG 2 cut(s) 1035, 1122
BssMI GATC 4 cut(s) 3, 184, 355, 1432
BssT1I CCWWGG 2 cut(s) 1035, 1122
Bst2UI CCWGG 1 cut(s) 19
Bst4CI ACNGT 8 cut(s) 94, 157, 841, 957, 1209, 1307, 1417, 1459
Bst6I CTCTTC 3 cut(s) 76, 215, 1068
BstAPI GCANNNNNTGC 1 cut(s) 1460
BstC8I GCNNGC 3 cut(s) 15, 30, 87
BstDEI CTNAG 8 cut(s) 178, 318, 516, 570, 582, 848, 1238, 1329
BstDSI CCRYGG 2 cut(s) 1035, 1122
BstF5I GGATG 4 cut(s) 799, 824, 1089, 1453
BstKTI GATC 4 cut(s) 6, 187, 358, 1435
BstMAI GTCTC 4 cut(s) 43, 564, 774, 1176
BstMBI GATC 4 cut(s) 3, 184, 355, 1432
BstMCI CGRYCG 1 cut(s) 46
BstMWI GCNNNNNNNGC 5 cut(s) 14, 19, 1324, 1343, 1460
BstNI CCWGG 1 cut(s) 19
BstSCI CCNGG 2 cut(s) 17, 460
BstSLI GKGCMC 1 cut(s) 99
BstV1I GCAGC 5 cut(s) 120, 237, 275, 700, 902
Bsu15I ATCGAT 1 cut(s) 878
Bsu36I CCTNAGG 2 cut(s) 848, 1329
BsuRI GGCC 5 cut(s) 17, 105, 503, 1034, 1243
BsuTUI ATCGAT 1 cut(s) 878
BtgI CCRYGG 2 cut(s) 1035, 1122
BtsCI GGATG 4 cut(s) 799, 824, 1089, 1453
Cac8I GCNNGC 3 cut(s) 15, 30, 87
CaiI CAGNNNCTG 1 cut(s) 266
Cfr10I RCCGGY 3 cut(s) 48, 85, 423
Cfr13I GGNCC 2 cut(s) 15, 103
ClaI ATCGAT 1 cut(s) 878
Csp6I GTAC 2 cut(s) 64, 287
CviAII CATG 3 cut(s) 1036, 1123, 1513
CviQI GTAC 2 cut(s) 64, 287
DdeI CTNAG 8 cut(s) 178, 318, 516, 570, 582, 848, 1238, 1329
DpnI GATC 4 cut(s) 5, 186, 357, 1434
DpnII GATC 4 cut(s) 3, 184, 355, 1432
DraI TTTAAA 1 cut(s) 495
DraIII CACNNNGTG 1 cut(s) 383
EaeI YGGCCR 2 cut(s) 501, 1032
Eam1104I CTCTTC 3 cut(s) 76, 215, 1068
EarI CTCTTC 3 cut(s) 76, 215, 1068
EciI GGCGGA 1 cut(s) 1369
Ecl136II GAGCTC 1 cut(s) 328
Eco130I CCWWGG 2 cut(s) 1035, 1122
Eco147I AGGCCT 1 cut(s) 1243
Eco24I GRGCYC 1 cut(s) 330
Eco31I GGTCTC 1 cut(s) 43
Eco32I GATATC 1 cut(s) 192
Eco53kI GAGCTC 1 cut(s) 328
Eco57I CTGAAG 2 cut(s) 57, 1266
Eco81I CCTNAGG 2 cut(s) 848, 1329
Eco88I CYCGRG 1 cut(s) 100
EcoICRI GAGCTC 1 cut(s) 328
EcoRII CCWGG 1 cut(s) 17
EcoRV GATATC 1 cut(s) 192
EcoT14I CCWWGG 2 cut(s) 1035, 1122
EcoT38I GRGCYC 1 cut(s) 330
ErhI CCWWGG 2 cut(s) 1035, 1122
Esp3I CGTCTC 1 cut(s) 774
FaeI CATG 3 cut(s) 1039, 1126, 1516
FalI AAGNNNNNCTT 2 cut(s) 1065, 1097
FatI CATG 3 cut(s) 1035, 1122, 1512
FauI CCCGC 2 cut(s) 6, 21
FauNDI CATATG 2 cut(s) 1135, 1521
FbaI TGATCA 1 cut(s) 1432
Fnu4HI GCNGC 6 cut(s) 106, 109, 226, 264, 714, 891
FokI GGATG 4 cut(s) 786, 831, 1076, 1460
FriOI GRGCYC 1 cut(s) 330
Fsp4HI GCNGC 6 cut(s) 106, 109, 226, 264, 714, 891
FspBI CTAG 3 cut(s) 563, 759, 1142
GluI GCNGC 6 cut(s) 106, 109, 226, 264, 714, 891
GsuI CTGGAG 1 cut(s) 1278
HaeIII GGCC 5 cut(s) 17, 105, 503, 1034, 1243
HapII CCGG 6 cut(s) 42, 49, 86, 424, 462, 816
Hin1II CATG 3 cut(s) 1039, 1126, 1516
HincII GTYRAC 2 cut(s) 129, 242
HindII GTYRAC 2 cut(s) 129, 242
HindIII AAGCTT 1 cut(s) 1235
HpaII CCGG 6 cut(s) 42, 49, 86, 424, 462, 816
HphI GGTGA 2 cut(s) 317, 476
Hpy166II GTNNAC 4 cut(s) 66, 97, 129, 242
Hpy188III TCNNGA 5 cut(s) 563, 734, 816, 1257, 1502
Hpy8I GTNNAC 4 cut(s) 66, 97, 129, 242
Hpy99I CGWCG 4 cut(s) 85, 94, 161, 509
HpyAV CCTTC 3 cut(s) 302, 1013, 1357
HpyCH4III ACNGT 8 cut(s) 94, 157, 841, 957, 1209, 1307, 1417, 1459
HpyCH4IV ACGT 2 cut(s) 456, 998
HpyCH4V TGCA 9 cut(s) 97, 146, 346, 629, 938, 1346, 1379, 1473, 1519
HpyF10VI GCNNNNNNNGC 5 cut(s) 14, 19, 1324, 1343, 1460
HpyF3I CTNAG 8 cut(s) 178, 318, 516, 570, 582, 848, 1238, 1329
HpySE526I ACGT 2 cut(s) 456, 998
Hsp92II CATG 3 cut(s) 1039, 1126, 1516
Kpn2I TCCGGA 1 cut(s) 815
KroI GCCGGC 1 cut(s) 85
KroNI GCCGGC 1 cut(s) 87
Ksp22I TGATCA 1 cut(s) 1432
Kzo9I GATC 4 cut(s) 3, 184, 355, 1432
LguI GCTCTTC 1 cut(s) 215
LmnI GCTCC 4 cut(s) 82, 333, 1286, 1451
Lsp1109I GCAGC 5 cut(s) 120, 237, 275, 700, 902
LweI GCATC 1 cut(s) 925
MaeI CTAG 3 cut(s) 563, 759, 1142
MaeII ACGT 2 cut(s) 456, 998
MaeIII GTNAC 7 cut(s) 256, 395, 464, 791, 841, 1077, 1209
MalI GATC 4 cut(s) 5, 186, 357, 1434
MboI GATC 4 cut(s) 3, 184, 355, 1432
MboII GAAGA 6 cut(s) 63, 232, 377, 876, 1085, 1259
MfeI CAATTG 2 cut(s) 196, 1290
MhlI GDGCHC 2 cut(s) 99, 330
MlsI TGGCCA 1 cut(s) 1034
MluNI TGGCCA 1 cut(s) 1034
MlyI GAGTC 1 cut(s) 1085
MmeI TCCRAC 2 cut(s) 460, 883
Mox20I TGGCCA 1 cut(s) 1034
MreI CGCCGGCG 1 cut(s) 85
MroI TCCGGA 1 cut(s) 815
MroNI GCCGGC 1 cut(s) 85
MroXI GAANNNNTTC 1 cut(s) 369
MscI TGGCCA 1 cut(s) 1034
MseI TTAA 7 cut(s) 441, 474, 494, 705, 873, 1052, 1274
Msp20I TGGCCA 1 cut(s) 1034
MspA1I CMGCKG 3 cut(s) 228, 266, 809
MspI CCGG 6 cut(s) 42, 49, 86, 424, 462, 816
MspR9I CCNGG 2 cut(s) 19, 462
MunI CAATTG 2 cut(s) 196, 1290
Mva1269I GAATGC 1 cut(s) 146
MvaI CCWGG 1 cut(s) 19
MwoI GCNNNNNNNGC 5 cut(s) 14, 19, 1324, 1343, 1460
NaeI GCCGGC 1 cut(s) 87
NciI CCSGG 1 cut(s) 462
NcoI CCATGG 2 cut(s) 1035, 1122
NdeI CATATG 2 cut(s) 1135, 1521
NdeII GATC 4 cut(s) 3, 184, 355, 1432
NgoMIV GCCGGC 1 cut(s) 85
NlaIII CATG 3 cut(s) 1039, 1126, 1516
NlaIV GGNNCC 3 cut(s) 522, 1102, 1368
NmuCI GTSAC 3 cut(s) 395, 464, 1077
PceI AGGCCT 1 cut(s) 1243
PciSI GCTCTTC 1 cut(s) 215
PctI GAATGC 1 cut(s) 146
PdiI GCCGGC 1 cut(s) 87
PdmI GAANNNNTTC 1 cut(s) 369
PfeI GAWTC 9 cut(s) 512, 566, 622, 726, 812, 855, 980, 1357, 1498
PkrI GCNGC 6 cut(s) 107, 110, 227, 265, 715, 892
PleI GAGTC 1 cut(s) 1084
PpsI GAGTC 1 cut(s) 1084
Psp124BI GAGCTC 1 cut(s) 330
Psp6I CCWGG 1 cut(s) 17
PspGI CCWGG 1 cut(s) 17
PspN4I GGNNCC 3 cut(s) 522, 1102, 1368
PspPI GGNCC 2 cut(s) 15, 103
PstNI CAGNNNCTG 1 cut(s) 266
PvuII CAGCTG 3 cut(s) 228, 266, 809
RsaI GTAC 2 cut(s) 65, 288
RsaNI GTAC 2 cut(s) 64, 287
SacI GAGCTC 1 cut(s) 330
SapI GCTCTTC 1 cut(s) 215
SaqAI TTAA 7 cut(s) 441, 474, 494, 705, 873, 1052, 1274
SatI GCNGC 6 cut(s) 106, 109, 226, 264, 714, 891
Sau3AI GATC 4 cut(s) 3, 184, 355, 1432
Sau96I GGNCC 2 cut(s) 15, 103
SchI GAGTC 1 cut(s) 1085
ScrFI CCNGG 2 cut(s) 19, 462
SduI GDGCHC 2 cut(s) 99, 330
SfaNI GCATC 1 cut(s) 925
SgrAI CRCCGGYG 2 cut(s) 48, 85
SmlI CTYRAG 1 cut(s) 1082
SmoI CTYRAG 1 cut(s) 1082
SseBI AGGCCT 1 cut(s) 1243
SsiI CCGC 4 cut(s) 13, 28, 106, 1354
SspI AATATT 1 cut(s) 1282
SspMI CTAG 3 cut(s) 563, 759, 1142
SstI GAGCTC 1 cut(s) 330
StuI AGGCCT 1 cut(s) 1243
StyD4I CCNGG 2 cut(s) 17, 460
StyI CCWWGG 2 cut(s) 1035, 1122
TaaI ACNGT 8 cut(s) 94, 157, 841, 957, 1209, 1307, 1417, 1459
TaiI ACGT 2 cut(s) 459, 1001
TaqI TCGA 3 cut(s) 121, 507, 878
TauI GCSGC 1 cut(s) 108
TfiI GAWTC 9 cut(s) 512, 566, 622, 726, 812, 855, 980, 1357, 1498
Tru1I TTAA 7 cut(s) 441, 474, 494, 705, 873, 1052, 1274
Tru9I TTAA 7 cut(s) 441, 474, 494, 705, 873, 1052, 1274
TseFI GTSAC 3 cut(s) 395, 464, 1077
TseI GCWGC 5 cut(s) 108, 225, 263, 713, 890
Tsp45I GTSAC 3 cut(s) 395, 464, 1077
TspDTI ATGAA 4 cut(s) 669, 899, 1070, 1086
TspGWI ACGGA 5 cut(s) 51, 69, 105, 1038, 1401
VneI GTGCAC 1 cut(s) 95
XapI RAATTY 3 cut(s) 368, 486, 541
XbaI TCTAGA 1 cut(s) 562
XmnI GAANNNNTTC 1 cut(s) 369
XspI CTAG 3 cut(s) 563, 759, 1142
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.