Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000744.1

Orthogroup ID

OG0007897

Physical Location & Seq

Genomic Coordinates Reverse (-)

6589 .. 8289

Gene Structure 1701 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000744.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

atggatactccatatggtctagttgtgccaaacataaagaatgttcagtctctttccatattggagataacaaagaagctttcacggttactacaattggcattggaaaacaagcttaggcctgaagatatatctggaggaacaattactctaagtaatattggggctattggtgggaagtatggttcccctcttctcaacttgccagaggttgccattattgcaattggacgaattcagaaggttccacaatatgcagatgatggaagtgtatatcctgcatcagttatgacggttaatataggcgctgatcatagagtgctggacggagcaactgttgcccgattctgtaaagagtggaaacaattaatagagaatccagagctgctcatgttgcacatgacatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004147 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005947 GO:0006950 GO:0007154 GO:0008150 GO:0008270 GO:0009267 GO:0009295 GO:0009314 GO:0009416 GO:0009605 GO:0009628 GO:0009642 GO:0009646 GO:0009743 GO:0009744 GO:0009987 GO:0009991 GO:0010033 GO:0016407 GO:0016417 GO:0016740 GO:0016746 GO:0016747 GO:0019899 GO:0030062 GO:0030523 GO:0031625 GO:0031667 GO:0031668 GO:0031669 GO:0031974 GO:0032991 GO:0033554 GO:0034285 GO:0042221 GO:0042594 GO:0042645 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043617 GO:0044389 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045239 GO:0045240 GO:0046872 GO:0046914 GO:0050896 GO:0051716 GO:0070013 GO:0071496 GO:0098798 GO:1901700 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00280 ko00640 ko01100 ko01110 ko01130 map00280 map00640 map01100 map01110 map01130

Pfam Domains

Protein Families

2-oxoacid_dh Biotin_lipoyl E3_binding

Protein Analysis

135

Amino Acids

14.69

Weight (kDa)

6.72

Isoelectric Point (pI)

47.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007897)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06850 AT3G06850
fragaria_vesca	FvH4_4g18561 FvH4_4g18561 FvH4_4g18561
malus_domestica	MD13G1165700.v1.1
prunus_persica	Prupe.1G132500_v2.0.a1
pyrus_communis	pycom13g14180 pycom16g14020
rosa_chinensis	RchiOBHm_Chr4g0423151
rosa_multiflora	Rmu_sc0000744.1_g000002 Rmu_sc0000744.1_g000004 Rmu_sc0008829.1_g000001 Rmu_sc0027756.1_g000002
rosa_roxburghii	Rroxscaffold_5G00365320
rosa_rugosa	Rorug04G0184700 Rorug04G0184800 Rorug04G0184800
rosa_samantha	Rh4AG244200 Rh4BG249400 Rh4CG258500 Rh4DG244100 Rh4DG244200
rosa_wichuraiana	Rw4G021040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	234
AcuI	CTGAAG	1 cut(s)	144
AloI	GAACNNNNNNTCC	2 cut(s)	169, 201
AluBI	AGCT	3 cut(s)	79, 115, 385
AluI	AGCT	3 cut(s)	79, 115, 385
Alw26I	GTCTC	1 cut(s)	54
AoxI	GGCC	1 cut(s)	119
ApeKI	GCWGC	1 cut(s)	385
ApoI	RAATTY	1 cut(s)	234
AseI	ATTAAT	1 cut(s)	368
AspLEI	GCGC	1 cut(s)	308
BbvI	GCAGC	1 cut(s)	372
BccI	CCATC	1 cut(s)	257
BclI	TGATCA	1 cut(s)	310
BcoDI	GTCTC	1 cut(s)	54
BfaI	CTAG	1 cut(s)	20
BfoI	RGCGCY	1 cut(s)	309
BisI	GCNGC	1 cut(s)	386
BlsI	GCNGC	1 cut(s)	387
BmiI	GGNNCC	2 cut(s)	187, 246
BmsI	GCATC	1 cut(s)	290
BpmI	CTGGAG	1 cut(s)	156
Bpu10I	CCTNAGC	1 cut(s)	116
BsaXI	ACNNNNNCTCC	2 cut(s)	321, 351
BseXI	GCAGC	1 cut(s)	372
BshFI	GGCC	1 cut(s)	121
BsmAI	GTCTC	1 cut(s)	54
BsnI	GGCC	1 cut(s)	121
Bsp143I	GATC	1 cut(s)	310
BspANI	GGCC	1 cut(s)	121
BspLI	GGNNCC	2 cut(s)	187, 246
BssMI	GATC	1 cut(s)	310
Bst4CI	ACNGT	3 cut(s)	87, 295, 337
Bst6I	CTCTTC	1 cut(s)	198
BstAPI	GCANNNNNTGC	1 cut(s)	338
BstDEI	CTNAG	2 cut(s)	116, 152
BstH2I	RGCGCY	1 cut(s)	309
BstHHI	GCGC	1 cut(s)	308
BstKTI	GATC	1 cut(s)	313
BstMAI	GTCTC	1 cut(s)	54
BstMBI	GATC	1 cut(s)	310
BstMWI	GCNNNNNNNGC	3 cut(s)	221, 338, 394
BstV1I	GCAGC	1 cut(s)	372
BsuRI	GGCC	1 cut(s)	121
CfoI	GCGC	1 cut(s)	308
CviAII	CATG	2 cut(s)	391, 400
CviJI	RGCY	5 cut(s)	79, 115, 121, 167, 385
CviKI_1	RGCY	5 cut(s)	79, 115, 121, 167, 385
DdeI	CTNAG	2 cut(s)	116, 152
DpnI	GATC	1 cut(s)	312
DpnII	GATC	1 cut(s)	310
Eam1104I	CTCTTC	1 cut(s)	198
EarI	CTCTTC	1 cut(s)	198
Eco147I	AGGCCT	1 cut(s)	121
Eco57I	CTGAAG	1 cut(s)	144
EcoRI	GAATTC	1 cut(s)	234
FaeI	CATG	2 cut(s)	394, 403
FatI	CATG	2 cut(s)	390, 399
FauNDI	CATATG	1 cut(s)	13
FbaI	TGATCA	1 cut(s)	310
Fnu4HI	GCNGC	1 cut(s)	386
Fsp4HI	GCNGC	1 cut(s)	386
FspBI	CTAG	1 cut(s)	20
GlaI	GCGC	1 cut(s)	307
GluI	GCNGC	1 cut(s)	386
GsuI	CTGGAG	1 cut(s)	156
HaeII	RGCGCY	1 cut(s)	309
HaeIII	GGCC	1 cut(s)	121
HhaI	GCGC	1 cut(s)	308
Hin1II	CATG	2 cut(s)	394, 403
Hin6I	GCGC	1 cut(s)	306
HinP1I	GCGC	1 cut(s)	306
HindIII	AAGCTT	2 cut(s)	77, 113
HinfI	GANTC	2 cut(s)	345, 376
Hpy188I	TCNGA	1 cut(s)	240
Hpy188III	TCNNGA	2 cut(s)	135, 380
HpyAV	CCTTC	1 cut(s)	235
HpyCH4III	ACNGT	3 cut(s)	87, 295, 337
HpyCH4V	TGCA	4 cut(s)	224, 257, 281, 397
HpyF10VI	GCNNNNNNNGC	3 cut(s)	221, 338, 394
HpyF3I	CTNAG	2 cut(s)	116, 152
Hsp92II	CATG	2 cut(s)	394, 403
HspAI	GCGC	1 cut(s)	306
Ksp22I	TGATCA	1 cut(s)	310
Kzo9I	GATC	1 cut(s)	310
LmnI	GCTCC	1 cut(s)	329
LpnPI	CCDG	6 cut(s)	120, 135, 219, 291, 308, 393
Lsp1109I	GCAGC	1 cut(s)	372
LweI	GCATC	1 cut(s)	290
MaeI	CTAG	1 cut(s)	20
MaeIII	GTNAC	1 cut(s)	87
MalI	GATC	1 cut(s)	312
MboI	GATC	1 cut(s)	310
MboII	GAAGA	2 cut(s)	137, 185
MfeI	CAATTG	2 cut(s)	95, 225
MluCI	AATT	5 cut(s)	95, 144, 225, 234, 365
MnlI	CCTC	3 cut(s)	131, 201, 202
MseI	TTAA	2 cut(s)	297, 368
MunI	CAATTG	2 cut(s)	95, 225
MwoI	GCNNNNNNNGC	3 cut(s)	221, 338, 394
NdeI	CATATG	1 cut(s)	13
NdeII	GATC	1 cut(s)	310
NlaIII	CATG	2 cut(s)	394, 403
NlaIV	GGNNCC	2 cut(s)	187, 246
PceI	AGGCCT	1 cut(s)	121
PfeI	GAWTC	2 cut(s)	345, 376
PkrI	GCNGC	1 cut(s)	387
PshBI	ATTAAT	1 cut(s)	368
PspN4I	GGNNCC	2 cut(s)	187, 246
SaqAI	TTAA	2 cut(s)	297, 368
SatI	GCNGC	1 cut(s)	386
Sau3AI	GATC	1 cut(s)	310
SetI	ASST	5 cut(s)	81, 117, 213, 246, 387
SfaNI	GCATC	1 cut(s)	290
Sse9I	AATT	5 cut(s)	95, 144, 225, 234, 365
SseBI	AGGCCT	1 cut(s)	121
SspI	AATATT	1 cut(s)	160
SspMI	CTAG	1 cut(s)	20
StuI	AGGCCT	1 cut(s)	121
TaaI	ACNGT	3 cut(s)	87, 295, 337
TasI	AATT	5 cut(s)	95, 144, 225, 234, 365
TfiI	GAWTC	2 cut(s)	345, 376
Tru1I	TTAA	2 cut(s)	297, 368
Tru9I	TTAA	2 cut(s)	297, 368
TseI	GCWGC	1 cut(s)	385
TspGWI	ACGGA	1 cut(s)	342
VspI	ATTAAT	1 cut(s)	368
XapI	RAATTY	1 cut(s)	234
XspI	CTAG	1 cut(s)	20

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.