Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000744.1

Orthogroup ID

OG0007897

Physical Location & Seq

Genomic Coordinates Reverse (-)

12649 .. 13870

Gene Structure 1222 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000744.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

atgtctggcagagaggttggcatcgggctaatagctttgctgttggttatgcactttctgggttttgcatatgctgtagatatgaacatgaaccttgcaaagaaatatggtatcgatatcaatgaagtccatggaactggtgacgatgggagagtattgaaagaagatgtccttaagtttgctttgcggaagggaattattgaagattcatctgcctcttcgacttctagttctgatgaattttccggattagaagagagttactcgcatcaatcagctaaagctgggtggatatgtgaagataagacagttaccttgaggggcttccagcgcgcaatggtcaaatcaatgactatggctgcaaaagttccacattttcattttgttgaggagataaattgcaatgcacttggaaagctaaaagagtctttccaaaggagcaactctgattcaagtgttaagcacaccttccttccatcattgataaagacactttcaatggccataagcaaatatccattagtgaacagttgtttcactgaggagtcacttgaggtcatcctaaaaggttcccacaacatcggaatcgccatggatactccatatggtctagttgtgccaaacataaagaatgttcagtctctttccatattggaggtcagttttatatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004147 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005947 GO:0006950 GO:0007154 GO:0008150 GO:0008270 GO:0009267 GO:0009295 GO:0009314 GO:0009416 GO:0009605 GO:0009628 GO:0009642 GO:0009646 GO:0009743 GO:0009744 GO:0009987 GO:0009991 GO:0010033 GO:0016407 GO:0016417 GO:0016740 GO:0016746 GO:0016747 GO:0019899 GO:0030062 GO:0030523 GO:0031625 GO:0031667 GO:0031668 GO:0031669 GO:0031974 GO:0032991 GO:0033554 GO:0034285 GO:0042221 GO:0042594 GO:0042645 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043617 GO:0044389 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045239 GO:0045240 GO:0046872 GO:0046914 GO:0050896 GO:0051716 GO:0070013 GO:0071496 GO:0098798 GO:1901700 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00280 ko00640 ko01100 ko01110 ko01130 map00280 map00640 map01100 map01110 map01130

Pfam Domains

Protein Families

2-oxoacid_dh Biotin_lipoyl E3_binding

Protein Analysis

223

Amino Acids

24.46

Weight (kDa)

6.16

Isoelectric Point (pI)

44.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007897)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06850 AT3G06850
fragaria_vesca	FvH4_4g18561 FvH4_4g18561 FvH4_4g18561
malus_domestica	MD13G1165700.v1.1
prunus_persica	Prupe.1G132500_v2.0.a1
pyrus_communis	pycom13g14180 pycom16g14020
rosa_chinensis	RchiOBHm_Chr4g0423151
rosa_multiflora	Rmu_sc0000744.1_g000002 Rmu_sc0000744.1_g000004 Rmu_sc0008829.1_g000001 Rmu_sc0027756.1_g000002
rosa_roxburghii	Rroxscaffold_5G00365320
rosa_rugosa	Rorug04G0184700 Rorug04G0184800 Rorug04G0184800
rosa_samantha	Rh4AG244200 Rh4BG249400 Rh4CG258500 Rh4DG244100 Rh4DG244200
rosa_wichuraiana	Rw4G021040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	333
AccIII	TCCGGA	1 cut(s)	245
AciI	CCGC	1 cut(s)	187
AcoI	YGGCCR	1 cut(s)	501
AcsI	RAATTY	1 cut(s)	239
AflII	CTTAAG	1 cut(s)	173
AgsI	TTSAA	4 cut(s)	160, 203, 453, 498
AluBI	AGCT	4 cut(s)	35, 278, 284, 418
AluI	AGCT	4 cut(s)	35, 278, 284, 418
Alw26I	GTCTC	1 cut(s)	645
Aor13HI	TCCGGA	1 cut(s)	245
AoxI	GGCC	1 cut(s)	501
ApeKI	GCWGC	1 cut(s)	359
ApoI	RAATTY	1 cut(s)	239
AspLEI	GCGC	2 cut(s)	333, 335
AsuHPI	GGTGA	1 cut(s)	152
BalI	TGGCCA	1 cut(s)	503
BbvI	GCAGC	1 cut(s)	346
BccI	CCATC	2 cut(s)	140, 484
BciVI	GTATCC	1 cut(s)	589
BcoDI	GTCTC	1 cut(s)	645
BfaI	CTAG	2 cut(s)	228, 611
BfmI	CTRYAG	1 cut(s)	75
BfrI	CTTAAG	1 cut(s)	173
BfuI	GTATCC	1 cut(s)	589
BisI	GCNGC	1 cut(s)	360
BlsI	GCNGC	1 cut(s)	361
BmiI	GGNNCC	1 cut(s)	571
BmsI	GCATC	2 cut(s)	30, 277
BplI	GAGNNNNNCTC	2 cut(s)	248, 280
BpuEI	CTTGAG	2 cut(s)	337, 572
Bsa29I	ATCGAT	1 cut(s)	114
BsaJI	CCNNGG	2 cut(s)	130, 591
BsaWI	WCCGGW	1 cut(s)	245
Bse1I	ACTGG	1 cut(s)	142
Bse3DI	GCAATG	2 cut(s)	342, 409
BseAI	TCCGGA	1 cut(s)	245
BseCI	ATCGAT	1 cut(s)	114
BseDI	CCNNGG	2 cut(s)	130, 591
BseGI	GGATG	1 cut(s)	558
BseMI	GCAATG	2 cut(s)	342, 409
BseMII	CTCAG	1 cut(s)	531
BseNI	ACTGG	1 cut(s)	142
BsePI	GCGCGC	1 cut(s)	331
BseRI	GAGGAG	2 cut(s)	404, 557
BseXI	GCAGC	1 cut(s)	346
BseYI	CCCAGC	1 cut(s)	284
Bsh1236I	CGCG	1 cut(s)	333
BshFI	GGCC	1 cut(s)	503
BshVI	ATCGAT	1 cut(s)	114
BsiSI	CCGG	1 cut(s)	246
BsmAI	GTCTC	1 cut(s)	645
BsnI	GGCC	1 cut(s)	503
Bsp13I	TCCGGA	1 cut(s)	245
Bsp19I	CCATGG	2 cut(s)	130, 591
BspACI	CCGC	1 cut(s)	187
BspANI	GGCC	1 cut(s)	503
BspCNI	CTCAG	1 cut(s)	532
BspDI	ATCGAT	1 cut(s)	114
BspEI	TCCGGA	1 cut(s)	245
BspFNI	CGCG	1 cut(s)	333
BspLI	GGNNCC	1 cut(s)	571
BspTI	CTTAAG	1 cut(s)	173
BsrDI	GCAATG	2 cut(s)	342, 409
BsrI	ACTGG	1 cut(s)	142
BssECI	CCNNGG	2 cut(s)	130, 591
BssHII	GCGCGC	1 cut(s)	331
BssT1I	CCWWGG	2 cut(s)	130, 591
Bst4CI	ACNGT	2 cut(s)	310, 530
Bst6I	CTCTTC	2 cut(s)	223, 249
BstAFI	CTTAAG	1 cut(s)	173
BstC8I	GCNNGC	1 cut(s)	333
BstDEI	CTNAG	1 cut(s)	540
BstDSI	CCRYGG	2 cut(s)	130, 591
BstF5I	GGATG	1 cut(s)	558
BstFNI	CGCG	1 cut(s)	333
BstHHI	GCGC	2 cut(s)	333, 335
BstMAI	GTCTC	1 cut(s)	645
BstMWI	GCNNNNNNNGC	1 cut(s)	330
BstSFI	CTRYAG	1 cut(s)	75
BstUI	CGCG	1 cut(s)	333
BstV1I	GCAGC	1 cut(s)	346
BstXI	CCANNNNNNTGG	1 cut(s)	137
Bsu15I	ATCGAT	1 cut(s)	114
BsuI	GTATCC	1 cut(s)	589
BsuRI	GGCC	1 cut(s)	503
BsuTUI	ATCGAT	1 cut(s)	114
BtgI	CCRYGG	2 cut(s)	130, 591
BtsCI	GGATG	1 cut(s)	558
BtsIMutI	CAGTG	1 cut(s)	537
Cac8I	GCNNGC	1 cut(s)	333
CfoI	GCGC	2 cut(s)	333, 335
ClaI	ATCGAT	1 cut(s)	114
CviAII	CATG	3 cut(s)	88, 131, 592
CviJI	RGCY	8 cut(s)	28, 35, 278, 284, 324, 359, 418, 503
CviKI_1	RGCY	8 cut(s)	28, 35, 278, 284, 324, 359, 418, 503
DdeI	CTNAG	1 cut(s)	540
EaeI	YGGCCR	1 cut(s)	501
Eam1104I	CTCTTC	2 cut(s)	223, 249
EarI	CTCTTC	2 cut(s)	223, 249
Eco130I	CCWWGG	2 cut(s)	130, 591
Eco32I	GATATC	1 cut(s)	118
EcoRV	GATATC	1 cut(s)	118
EcoT14I	CCWWGG	2 cut(s)	130, 591
ErhI	CCWWGG	2 cut(s)	130, 591
FaeI	CATG	3 cut(s)	91, 134, 595
FalI	AAGNNNNNCTT	4 cut(s)	156, 188, 452, 484
FatI	CATG	3 cut(s)	87, 130, 591
FauNDI	CATATG	2 cut(s)	70, 604
Fnu4HI	GCNGC	1 cut(s)	360
FokI	GGATG	1 cut(s)	545
Fsp4HI	GCNGC	1 cut(s)	360
FspBI	CTAG	2 cut(s)	228, 611
GlaI	GCGC	2 cut(s)	332, 334
GluI	GCNGC	1 cut(s)	360
GsaI	CCCAGC	1 cut(s)	288
HaeIII	GGCC	1 cut(s)	503
HapII	CCGG	1 cut(s)	246
HhaI	GCGC	2 cut(s)	333, 335
Hin1II	CATG	3 cut(s)	91, 134, 595
Hin6I	GCGC	2 cut(s)	331, 333
HinP1I	GCGC	2 cut(s)	331, 333
HinfI	GANTC	5 cut(s)	206, 425, 449, 545, 585
HpaII	CCGG	1 cut(s)	246
HphI	GGTGA	1 cut(s)	152
Hpy166II	GTNNAC	1 cut(s)	526
Hpy188I	TCNGA	3 cut(s)	235, 448, 584
Hpy188III	TCNNGA	1 cut(s)	246
Hpy8I	GTNNAC	1 cut(s)	526
HpyAV	CCTTC	3 cut(s)	184, 478, 482
HpyCH4III	ACNGT	2 cut(s)	310, 530
HpyCH4V	TGCA	6 cut(s)	52, 68, 98, 362, 402, 407
HpyF10VI	GCNNNNNNNGC	1 cut(s)	330
HpyF3I	CTNAG	1 cut(s)	540
Hsp92II	CATG	3 cut(s)	91, 134, 595
HspAI	GCGC	2 cut(s)	331, 333
Kpn2I	TCCGGA	1 cut(s)	245
LmnI	GCTCC	1 cut(s)	438
LpnPI	CCDG	5 cut(s)	44, 123, 259, 270, 341
Lsp1109I	GCAGC	1 cut(s)	346
LweI	GCATC	2 cut(s)	30, 277
MaeI	CTAG	2 cut(s)	228, 611
MaeIII	GTNAC	4 cut(s)	140, 260, 310, 546
MboII	GAAGA	5 cut(s)	176, 210, 215, 266, 311
MlsI	TGGCCA	1 cut(s)	503
MluCI	AATT	3 cut(s)	195, 239, 397
MluNI	TGGCCA	1 cut(s)	503
MlyI	GAGTC	2 cut(s)	434, 554
MnlI	CCTC	7 cut(s)	7, 226, 312, 382, 535, 547, 649
Mox20I	TGGCCA	1 cut(s)	503
MroI	TCCGGA	1 cut(s)	245
MscI	TGGCCA	1 cut(s)	503
MseI	TTAA	2 cut(s)	174, 459
Msp20I	TGGCCA	1 cut(s)	503
MspCI	CTTAAG	1 cut(s)	173
MspI	CCGG	1 cut(s)	246
MvnI	CGCG	1 cut(s)	333
MwoI	GCNNNNNNNGC	1 cut(s)	330
NcoI	CCATGG	2 cut(s)	130, 591
NdeI	CATATG	2 cut(s)	70, 604
NlaIII	CATG	3 cut(s)	91, 134, 595
NlaIV	GGNNCC	1 cut(s)	571
NmuCI	GTSAC	2 cut(s)	140, 546
PauI	GCGCGC	1 cut(s)	331
PfeI	GAWTC	3 cut(s)	206, 449, 585
PkrI	GCNGC	1 cut(s)	361
PleI	GAGTC	2 cut(s)	433, 553
PpsI	GAGTC	2 cut(s)	433, 553
PspFI	CCCAGC	1 cut(s)	284
PspN4I	GGNNCC	1 cut(s)	571
PteI	GCGCGC	1 cut(s)	331
SaqAI	TTAA	2 cut(s)	174, 459
SatI	GCNGC	1 cut(s)	360
SchI	GAGTC	2 cut(s)	434, 554
SfaNI	GCATC	2 cut(s)	30, 277
SfcI	CTRYAG	1 cut(s)	75
SmlI	CTYRAG	3 cut(s)	173, 316, 551
SmoI	CTYRAG	3 cut(s)	173, 316, 551
Sse9I	AATT	3 cut(s)	195, 239, 397
SsiI	CCGC	1 cut(s)	187
SspMI	CTAG	2 cut(s)	228, 611
StyI	CCWWGG	2 cut(s)	130, 591
TaaI	ACNGT	2 cut(s)	310, 530
TaqI	TCGA	2 cut(s)	114, 221
TasI	AATT	3 cut(s)	195, 239, 397
TfiI	GAWTC	3 cut(s)	206, 449, 585
Tru1I	TTAA	2 cut(s)	174, 459
Tru9I	TTAA	2 cut(s)	174, 459
TscAI	CASTG	1 cut(s)	544
TseFI	GTSAC	2 cut(s)	140, 546
TseI	GCWGC	1 cut(s)	359
Tsp45I	GTSAC	2 cut(s)	140, 546
TspDTI	ATGAA	6 cut(s)	98, 104, 138, 198, 252, 368
TspRI	CASTG	1 cut(s)	544
Vha464I	CTTAAG	1 cut(s)	173
XapI	RAATTY	1 cut(s)	239
XspI	CTAG	2 cut(s)	228, 611

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.