Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008829.1

Orthogroup ID

OG0007897

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1344

Gene Structure 1344 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008829.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 431 bp

gttcccacaacatcggaattgccatggatactccatatggtctagttgtgccaaacataaagaatgttcagtctctttccatattggagataacaaaggaactttcacggttactacaattggcattggaaaacaagcttaggcctgaagatatatctggaggaacaattactctaagtaatattggggctattggtgggaagtatggttcccctcttctcaacttgccagaggttgccattattgcaattggacgaattcagaaggttccacaatatgcagatgatggaagtgtatatcctgcatcagttatgacggttaatataggcgctgatcatagagtgctggacggagcaactgttgcccgattctgtaaagagtggaaacaattaatagagaatccagagctgctcatgttgcacatgacatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004147 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005947 GO:0006950 GO:0007154 GO:0008150 GO:0008270 GO:0009267 GO:0009295 GO:0009314 GO:0009416 GO:0009605 GO:0009628 GO:0009642 GO:0009646 GO:0009743 GO:0009744 GO:0009987 GO:0009991 GO:0010033 GO:0016407 GO:0016417 GO:0016740 GO:0016746 GO:0016747 GO:0019899 GO:0030062 GO:0030523 GO:0031625 GO:0031667 GO:0031668 GO:0031669 GO:0031974 GO:0032991 GO:0033554 GO:0034285 GO:0042221 GO:0042594 GO:0042645 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043617 GO:0044389 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045239 GO:0045240 GO:0046872 GO:0046914 GO:0050896 GO:0051716 GO:0070013 GO:0071496 GO:0098798 GO:1901700 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00280 ko00640 ko01100 ko01110 ko01130 map00280 map00640 map01100 map01110 map01130

Pfam Domains

Protein Families

2-oxoacid_dh Biotin_lipoyl E3_binding

Protein Analysis

142

Amino Acids

15.39

Weight (kDa)

5.87

Isoelectric Point (pI)

50.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007897)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06850 AT3G06850
fragaria_vesca	FvH4_4g18561 FvH4_4g18561 FvH4_4g18561
malus_domestica	MD13G1165700.v1.1
prunus_persica	Prupe.1G132500_v2.0.a1
pyrus_communis	pycom13g14180 pycom16g14020
rosa_chinensis	RchiOBHm_Chr4g0423151
rosa_multiflora	Rmu_sc0000744.1_g000002 Rmu_sc0000744.1_g000004 Rmu_sc0008829.1_g000001 Rmu_sc0027756.1_g000002
rosa_roxburghii	Rroxscaffold_5G00365320
rosa_rugosa	Rorug04G0184700 Rorug04G0184800 Rorug04G0184800
rosa_samantha	Rh4AG244200 Rh4BG249400 Rh4CG258500 Rh4DG244100 Rh4DG244200
rosa_wichuraiana	Rw4G021040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	257
AcuI	CTGAAG	1 cut(s)	167
AloI	GAACNNNNNNTCC	2 cut(s)	192, 224
AluBI	AGCT	2 cut(s)	138, 408
AluI	AGCT	2 cut(s)	138, 408
Alw26I	GTCTC	1 cut(s)	77
AoxI	GGCC	1 cut(s)	142
ApeKI	GCWGC	1 cut(s)	408
ApoI	RAATTY	1 cut(s)	257
AseI	ATTAAT	1 cut(s)	391
AspLEI	GCGC	1 cut(s)	331
BbvI	GCAGC	1 cut(s)	395
BccI	CCATC	1 cut(s)	280
BciVI	GTATCC	1 cut(s)	21
BclI	TGATCA	1 cut(s)	333
BcoDI	GTCTC	1 cut(s)	77
BfaI	CTAG	1 cut(s)	43
BfoI	RGCGCY	1 cut(s)	332
BfuI	GTATCC	1 cut(s)	21
BisI	GCNGC	1 cut(s)	409
BlsI	GCNGC	1 cut(s)	410
BmiI	GGNNCC	2 cut(s)	210, 269
BmsI	GCATC	1 cut(s)	313
BpmI	CTGGAG	1 cut(s)	179
Bpu10I	CCTNAGC	1 cut(s)	139
BsaJI	CCNNGG	1 cut(s)	23
BsaXI	ACNNNNNCTCC	2 cut(s)	344, 374
BseDI	CCNNGG	1 cut(s)	23
BseXI	GCAGC	1 cut(s)	395
BshFI	GGCC	1 cut(s)	144
BsmAI	GTCTC	1 cut(s)	77
BsnI	GGCC	1 cut(s)	144
Bsp143I	GATC	1 cut(s)	333
Bsp19I	CCATGG	1 cut(s)	23
BspANI	GGCC	1 cut(s)	144
BspLI	GGNNCC	2 cut(s)	210, 269
BssECI	CCNNGG	1 cut(s)	23
BssMI	GATC	1 cut(s)	333
BssT1I	CCWWGG	1 cut(s)	23
Bst4CI	ACNGT	3 cut(s)	110, 318, 360
Bst6I	CTCTTC	1 cut(s)	221
BstAPI	GCANNNNNTGC	1 cut(s)	361
BstDEI	CTNAG	2 cut(s)	139, 175
BstDSI	CCRYGG	1 cut(s)	23
BstH2I	RGCGCY	1 cut(s)	332
BstHHI	GCGC	1 cut(s)	331
BstKTI	GATC	1 cut(s)	336
BstMAI	GTCTC	1 cut(s)	77
BstMBI	GATC	1 cut(s)	333
BstMWI	GCNNNNNNNGC	3 cut(s)	244, 361, 417
BstV1I	GCAGC	1 cut(s)	395
BsuI	GTATCC	1 cut(s)	21
BsuRI	GGCC	1 cut(s)	144
BtgI	CCRYGG	1 cut(s)	23
CfoI	GCGC	1 cut(s)	331
CviAII	CATG	3 cut(s)	24, 414, 423
CviJI	RGCY	4 cut(s)	138, 144, 190, 408
CviKI_1	RGCY	4 cut(s)	138, 144, 190, 408
DdeI	CTNAG	2 cut(s)	139, 175
DpnI	GATC	1 cut(s)	335
DpnII	GATC	1 cut(s)	333
Eam1104I	CTCTTC	1 cut(s)	221
EarI	CTCTTC	1 cut(s)	221
Eco130I	CCWWGG	1 cut(s)	23
Eco147I	AGGCCT	1 cut(s)	144
Eco57I	CTGAAG	1 cut(s)	167
EcoRI	GAATTC	1 cut(s)	257
EcoT14I	CCWWGG	1 cut(s)	23
ErhI	CCWWGG	1 cut(s)	23
FaeI	CATG	3 cut(s)	27, 417, 426
FatI	CATG	3 cut(s)	23, 413, 422
FauNDI	CATATG	1 cut(s)	36
FbaI	TGATCA	1 cut(s)	333
Fnu4HI	GCNGC	1 cut(s)	409
Fsp4HI	GCNGC	1 cut(s)	409
FspBI	CTAG	1 cut(s)	43
GlaI	GCGC	1 cut(s)	330
GluI	GCNGC	1 cut(s)	409
GsuI	CTGGAG	1 cut(s)	179
HaeII	RGCGCY	1 cut(s)	332
HaeIII	GGCC	1 cut(s)	144
HhaI	GCGC	1 cut(s)	331
Hin1II	CATG	3 cut(s)	27, 417, 426
Hin6I	GCGC	1 cut(s)	329
HinP1I	GCGC	1 cut(s)	329
HindIII	AAGCTT	1 cut(s)	136
HinfI	GANTC	2 cut(s)	368, 399
Hpy188I	TCNGA	2 cut(s)	16, 263
Hpy188III	TCNNGA	2 cut(s)	158, 403
HpyAV	CCTTC	1 cut(s)	258
HpyCH4III	ACNGT	3 cut(s)	110, 318, 360
HpyCH4V	TGCA	4 cut(s)	247, 280, 304, 420
HpyF10VI	GCNNNNNNNGC	3 cut(s)	244, 361, 417
HpyF3I	CTNAG	2 cut(s)	139, 175
Hsp92II	CATG	3 cut(s)	27, 417, 426
HspAI	GCGC	1 cut(s)	329
Ksp22I	TGATCA	1 cut(s)	333
Kzo9I	GATC	1 cut(s)	333
LmnI	GCTCC	1 cut(s)	352
LpnPI	CCDG	6 cut(s)	143, 158, 242, 314, 331, 416
Lsp1109I	GCAGC	1 cut(s)	395
LweI	GCATC	1 cut(s)	313
MaeI	CTAG	1 cut(s)	43
MaeIII	GTNAC	1 cut(s)	110
MalI	GATC	1 cut(s)	335
MboI	GATC	1 cut(s)	333
MboII	GAAGA	2 cut(s)	160, 208
MfeI	CAATTG	2 cut(s)	118, 248
MluCI	AATT	6 cut(s)	17, 118, 167, 248, 257, 388
MnlI	CCTC	3 cut(s)	154, 224, 225
MseI	TTAA	2 cut(s)	320, 391
MunI	CAATTG	2 cut(s)	118, 248
MwoI	GCNNNNNNNGC	3 cut(s)	244, 361, 417
NcoI	CCATGG	1 cut(s)	23
NdeI	CATATG	1 cut(s)	36
NdeII	GATC	1 cut(s)	333
NlaIII	CATG	3 cut(s)	27, 417, 426
NlaIV	GGNNCC	2 cut(s)	210, 269
PceI	AGGCCT	1 cut(s)	144
PfeI	GAWTC	2 cut(s)	368, 399
PkrI	GCNGC	1 cut(s)	410
PshBI	ATTAAT	1 cut(s)	391
PspN4I	GGNNCC	2 cut(s)	210, 269
SaqAI	TTAA	2 cut(s)	320, 391
SatI	GCNGC	1 cut(s)	409
Sau3AI	GATC	1 cut(s)	333
SetI	ASST	4 cut(s)	140, 236, 269, 410
SfaNI	GCATC	1 cut(s)	313
Sse9I	AATT	6 cut(s)	17, 118, 167, 248, 257, 388
SseBI	AGGCCT	1 cut(s)	144
SspI	AATATT	1 cut(s)	183
SspMI	CTAG	1 cut(s)	43
StuI	AGGCCT	1 cut(s)	144
StyI	CCWWGG	1 cut(s)	23
TaaI	ACNGT	3 cut(s)	110, 318, 360
TasI	AATT	6 cut(s)	17, 118, 167, 248, 257, 388
TfiI	GAWTC	2 cut(s)	368, 399
Tru1I	TTAA	2 cut(s)	320, 391
Tru9I	TTAA	2 cut(s)	320, 391
TseI	GCWGC	1 cut(s)	408
TspGWI	ACGGA	1 cut(s)	365
VspI	ATTAAT	1 cut(s)	391
XapI	RAATTY	1 cut(s)	257
XspI	CTAG	1 cut(s)	43

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.