Rw4G021040

Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
Physical Location & Seq
Forward (+)
45422090 .. 45425673
3584 bp
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UTR
Exon/CDS
Intron
Rw4G021040.1

Sequence Viewer

Length: 1506 bp
ATGATTGGGAGGAGGATCTGGAGCAAGCGGGCTTGGGTCACCGGCCACCGATGGCTCTGTTCGCGCACTGCTCCGGGCCTATCGCCGGCGACGGTGTGCTCAGATCACACCTCTCTATTTCGTGTATTCTCATCTTCCACCTCATTTCGATATGTTGATGGGATACCCAAGTCTAGCATTGCTCATCATGTGAAGAGGAGCTGGTGTTCGAGTCAGGCTCAGGCGTCCAGTGATGTAACTAGTGGTAGTGGTATAGTTGATGTGCCGTTAGCTCAAACCGGTGAAGGCATTGCTGAGTGTGAACTCCTCAAATGGTTTGTGAAAGAGGGTGACCAAGTGGAAGCCTTTCAGCCAATTTGTGAGGTTCAAAGTGACAAAGCAACGATTGAGATAACAAGCCGTTATCAAGGAAGAGTTGCTCAGATTCACTACGTTCCTGGTGACATTGTGAAGGTTGGAGAAATTCTTTTGAAAATGATGGTTGAGGAATCTGAGGTTCCAAAGCAGACTTGCAATAGTTTGGAGAATACAAAGTCACTAGATTCTGACCTGAACACACAGAACATAGGTGGAGTTCTATCCACACCTCCCGTTAGGAACCTTGCAAAGAAATATGGTATCGATATCAATGAAGTCCATGGAACTGGTGACGATGGGAGAGTATTGAAAGAAGATGTCCTTAAGTTTGCTTTGCAGAAGGGAATTATTGAAGATTCATCTGCCTCTTCGACTTCTAGTTCTGATGAATTTTCCGGATTAGAAGAGAGTTACTCGCATCAATCAGCTAAAGCTGGGTGGATATGTGAAGATAAGACAGTTACCTTGAGGGGCTTCCAGCGCGCAATGGTCAAATCAATGACTATGGCTGCAAAAGTTCCACATTTTCATTTTGTTGAGGAGATAAATTGCAATGCACTTGGAAAGCTAAAAGAGTCTTTCCAAAGGAGCAACTCTGATTCAAGTGTTAAGCACACCTTCCTTCCATCATTGATAAAGACACTTTCAATGGCCATAAGCAAATATCCATTAGTGAACAGTTGTTTCACTGAGGAGTCACTTGAGGTCATCCTAAAAGGTTCCCACAACATCGGAATCGCCATGGATACTCCATATGGTCTAGTTGTGCCAAACATAAAGAATGTTCAGTCTCTTTCCATATTGGAGATAACAAAGGAACTTTCACGGTTACTACAATTGGCATTGGAAAACAAGCTTAGGCCTGAAGATATATCTGGAGGAACAATTACTCTAAGTAATATTGGGGCTATTGGTGGGAAGTATGGTTCCCCTCTTCTCAACTTGCCAGAGGTTGCCATTATTGCAATTGGACGAATTCAGAAGGTTCCACAATATGCAGATGATGGAAGTGTATATCCTGCATCAGTTATGACGGTTAATATAGGCGCTGATCATAGAGTGCTGGACGGAGCAACTGTTGCCCGATTCTGTAAAGAGTGGAAACAATTAATAGAGAATCCAGAGCTGCTCATGTTGCACATGACATAG

Protein Analysis

501

Amino Acids

54.83

Weight (kDa)

6.38

Isoelectric Point (pI)

48.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Biotin_lipoyl PF00364 88 - 159 1e-18 Biotin-requiring enzyme
E3_binding PF02817 192 - 227 1.4e-13 e3 binding domain
2-oxoacid_dh PF00198 270 - 498 1.2e-78 2-oxoacid dehydrogenases acyltransferase (catalytic domain)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 64, 840
AccIII TCCGGA 1 cut(s) 752
AciI CCGC 1 cut(s) 28
AclWI GGATC 1 cut(s) 23
AcoI YGGCCR 2 cut(s) 43, 1008
AcsI RAATTY 3 cut(s) 462, 746, 1332
AcuI CTGAAG 1 cut(s) 1242
AcyI GRCGYC 1 cut(s) 224
AfiI CCNNNNNNNGG 1 cut(s) 85
AflII CTTAAG 1 cut(s) 680
AgeI ACCGGT 1 cut(s) 278
AgsI TTSAA 6 cut(s) 368, 472, 667, 710, 960, 1005
AhlI ACTAGT 1 cut(s) 239
AjnI CCWGG 1 cut(s) 436
AloI GAACNNNNNNTCC 4 cut(s) 190, 222, 1267, 1299
AluBI AGCT 7 cut(s) 201, 272, 785, 791, 925, 1213, 1483
AluI AGCT 7 cut(s) 201, 272, 785, 791, 925, 1213, 1483
Alw21I GWGCWC 1 cut(s) 101
Alw26I GTCTC 1 cut(s) 1152
AlwI GGATC 1 cut(s) 23
Aor13HI TCCGGA 1 cut(s) 752
AoxI GGCC 4 cut(s) 43, 76, 1008, 1217
ApeKI GCWGC 2 cut(s) 866, 1483
ApoI RAATTY 3 cut(s) 462, 746, 1332
AseI ATTAAT 1 cut(s) 1466
AsiGI ACCGGT 1 cut(s) 278
Asp700I GAANNNNTTC 1 cut(s) 345
AspLEI GCGC 4 cut(s) 66, 840, 842, 1406
AspS9I GGNCC 1 cut(s) 76
AsuC2I CCSGG 1 cut(s) 75
AsuHPI GGTGA 5 cut(s) 31, 293, 341, 452, 659
BaeI ACNNNNGTAYC 2 cut(s) 155, 188
BalI TGGCCA 1 cut(s) 1010
Bbv12I GWGCWC 1 cut(s) 101
BbvI GCAGC 2 cut(s) 853, 1470
BccI CCATC 6 cut(s) 45, 152, 472, 647, 991, 1355
BceAI ACGGC 2 cut(s) 250, 384
BciT130I CCWGG 1 cut(s) 438
BciVI GTATCC 2 cut(s) 156, 1096
BclI TGATCA 1 cut(s) 1408
BcnI CCSGG 1 cut(s) 75
BcoDI GTCTC 1 cut(s) 1152
BcuI ACTAGT 1 cut(s) 239
BfaI CTAG 5 cut(s) 174, 240, 539, 735, 1118
BfoI RGCGCY 1 cut(s) 1407
BfrI CTTAAG 1 cut(s) 680
BfuI GTATCC 2 cut(s) 156, 1096
BisI GCNGC 2 cut(s) 867, 1484
BlsI GCNGC 2 cut(s) 868, 1485
Bme1390I CCNGG 2 cut(s) 75, 438
BmgT120I GGNCC 1 cut(s) 76
BmiI GGNNCC 5 cut(s) 498, 599, 1078, 1285, 1344
BmrFI CCNGG 2 cut(s) 75, 438
BmsI GCATC 2 cut(s) 784, 1388
BplI GAGNNNNNCTC 4 cut(s) 202, 234, 755, 787
BpmI CTGGAG 2 cut(s) 40, 1254
Bpu10I CCTNAGC 2 cut(s) 219, 1214
BpuEI CTTGAG 2 cut(s) 844, 1079
BpuMI CCSGG 1 cut(s) 75
Bsa29I ATCGAT 1 cut(s) 621
BsaHI GRCGYC 1 cut(s) 224
BsaJI CCNNGG 2 cut(s) 637, 1098
BsaWI WCCGGW 2 cut(s) 278, 752
BsaXI ACNNNNNCTCC 4 cut(s) 190, 220, 1419, 1449
Bsc4I CCNNNNNNNGG 1 cut(s) 85
Bse118I RCCGGY 3 cut(s) 41, 85, 278
Bse1I ACTGG 2 cut(s) 228, 649
Bse3DI GCAATG 4 cut(s) 177, 288, 849, 916
BseAI TCCGGA 1 cut(s) 752
BseBI CCWGG 1 cut(s) 438
BseCI ATCGAT 1 cut(s) 621
BseDI CCNNGG 2 cut(s) 637, 1098
BseGI GGATG 1 cut(s) 1065
BseLI CCNNNNNNNGG 1 cut(s) 85
BseMI GCAATG 4 cut(s) 177, 288, 849, 916
BseMII CTCAG 6 cut(s) 114, 233, 285, 434, 483, 1038
BseNI ACTGG 2 cut(s) 228, 649
BsePI GCGCGC 1 cut(s) 838
BseRI GAGGAG 5 cut(s) 25, 211, 296, 911, 1064
BseXI GCAGC 2 cut(s) 853, 1470
BseYI CCCAGC 1 cut(s) 791
Bsh1236I CGCG 2 cut(s) 64, 840
BshFI GGCC 4 cut(s) 45, 78, 1010, 1219
BshTI ACCGGT 1 cut(s) 278
BshVI ATCGAT 1 cut(s) 621
BsiHKAI GWGCWC 1 cut(s) 101
BsiSI CCGG 5 cut(s) 42, 74, 86, 279, 753
BslI CCNNNNNNNGG 1 cut(s) 85
BsmAI GTCTC 1 cut(s) 1152
BsnI GGCC 4 cut(s) 45, 78, 1010, 1219
Bsp1286I GDGCHC 1 cut(s) 101
Bsp13I TCCGGA 1 cut(s) 752
Bsp143I GATC 3 cut(s) 15, 103, 1408
Bsp19I CCATGG 2 cut(s) 637, 1098
BspACI CCGC 1 cut(s) 28
BspANI GGCC 4 cut(s) 45, 78, 1010, 1219
BspCNI CTCAG 6 cut(s) 113, 232, 286, 433, 484, 1039
BspDI ATCGAT 1 cut(s) 621
BspEI TCCGGA 1 cut(s) 752
BspFNI CGCG 2 cut(s) 64, 840
BspLI GGNNCC 5 cut(s) 498, 599, 1078, 1285, 1344
BspPI GGATC 1 cut(s) 23
BspTI CTTAAG 1 cut(s) 680
BsrDI GCAATG 4 cut(s) 177, 288, 849, 916
BsrFI RCCGGY 3 cut(s) 41, 85, 278
BsrI ACTGG 2 cut(s) 228, 649
BssAI RCCGGY 3 cut(s) 41, 85, 278
BssECI CCNNGG 2 cut(s) 637, 1098
BssHII GCGCGC 1 cut(s) 838
BssMI GATC 3 cut(s) 15, 103, 1408
BssNI GRCGYC 1 cut(s) 224
BssT1I CCWWGG 2 cut(s) 637, 1098
Bst2UI CCWGG 1 cut(s) 438
Bst4CI ACNGT 6 cut(s) 94, 817, 1037, 1185, 1393, 1435
Bst6I CTCTTC 5 cut(s) 188, 406, 730, 756, 1296
BstACI GRCGYC 1 cut(s) 224
BstAFI CTTAAG 1 cut(s) 680
BstAPI GCANNNNNTGC 1 cut(s) 1436
BstC8I GCNNGC 4 cut(s) 26, 30, 87, 840
BstDEI CTNAG 8 cut(s) 100, 219, 294, 420, 492, 1047, 1214, 1250
BstDSI CCRYGG 2 cut(s) 637, 1098
BstEII GGTNACC 2 cut(s) 37, 329
BstF5I GGATG 1 cut(s) 1065
BstFNI CGCG 2 cut(s) 64, 840
BstH2I RGCGCY 1 cut(s) 1407
BstHHI GCGC 4 cut(s) 66, 840, 842, 1406
BstKTI GATC 3 cut(s) 18, 106, 1411
BstMAI GTCTC 1 cut(s) 1152
BstMBI GATC 3 cut(s) 15, 103, 1408
BstMWI GCNNNNNNNGC 5 cut(s) 61, 837, 1319, 1436, 1492
BstNI CCWGG 1 cut(s) 438
BstPI GGTNACC 2 cut(s) 37, 329
BstSCI CCNGG 2 cut(s) 73, 436
BstUI CGCG 2 cut(s) 64, 840
BstV1I GCAGC 2 cut(s) 853, 1470
BstX2I RGATCY 1 cut(s) 15
BstXI CCANNNNNNTGG 1 cut(s) 644
BstYI RGATCY 1 cut(s) 15
Bsu15I ATCGAT 1 cut(s) 621
BsuI GTATCC 2 cut(s) 156, 1096
BsuRI GGCC 4 cut(s) 45, 78, 1010, 1219
BsuTUI ATCGAT 1 cut(s) 621
BtgI CCRYGG 2 cut(s) 637, 1098
BtsCI GGATG 1 cut(s) 1065
BtsI GCAGTG 1 cut(s) 66
BtsIMutI CAGTG 3 cut(s) 66, 235, 1044
Cac8I GCNNGC 4 cut(s) 26, 30, 87, 840
CfoI GCGC 4 cut(s) 66, 840, 842, 1406
Cfr10I RCCGGY 3 cut(s) 41, 85, 278
Cfr13I GGNCC 1 cut(s) 76
ClaI ATCGAT 1 cut(s) 621
CseI GACGC 1 cut(s) 213
CspAI ACCGGT 1 cut(s) 278
CviAII CATG 5 cut(s) 188, 638, 1099, 1489, 1498
DdeI CTNAG 8 cut(s) 100, 219, 294, 420, 492, 1047, 1214, 1250
DpnI GATC 3 cut(s) 17, 105, 1410
DpnII GATC 3 cut(s) 15, 103, 1408
EaeI YGGCCR 2 cut(s) 43, 1008
Eam1104I CTCTTC 5 cut(s) 188, 406, 730, 756, 1296
EarI CTCTTC 5 cut(s) 188, 406, 730, 756, 1296
Eco130I CCWWGG 2 cut(s) 637, 1098
Eco147I AGGCCT 1 cut(s) 1219
Eco32I GATATC 1 cut(s) 625
Eco57I CTGAAG 1 cut(s) 1242
Eco91I GGTNACC 2 cut(s) 37, 329
EcoO65I GGTNACC 2 cut(s) 37, 329
EcoRI GAATTC 1 cut(s) 1332
EcoRII CCWGG 1 cut(s) 436
EcoRV GATATC 1 cut(s) 625
EcoT14I CCWWGG 2 cut(s) 637, 1098
ErhI CCWWGG 2 cut(s) 637, 1098
FaeI CATG 5 cut(s) 191, 641, 1102, 1492, 1501
FalI AAGNNNNNCTT 4 cut(s) 663, 695, 959, 991
FatI CATG 5 cut(s) 187, 637, 1098, 1488, 1497
FauI CCCGC 1 cut(s) 21
FauNDI CATATG 1 cut(s) 1111
FbaI TGATCA 1 cut(s) 1408
Fnu4HI GCNGC 2 cut(s) 867, 1484
FokI GGATG 1 cut(s) 1052
Fsp4HI GCNGC 2 cut(s) 867, 1484
FspBI CTAG 5 cut(s) 174, 240, 539, 735, 1118
GlaI GCGC 4 cut(s) 65, 839, 841, 1405
GluI GCNGC 2 cut(s) 867, 1484
GsaI CCCAGC 1 cut(s) 795
GsuI CTGGAG 2 cut(s) 40, 1254
HaeII RGCGCY 1 cut(s) 1407
HaeIII GGCC 4 cut(s) 45, 78, 1010, 1219
HapII CCGG 5 cut(s) 42, 74, 86, 279, 753
HgaI GACGC 1 cut(s) 213
HhaI GCGC 4 cut(s) 66, 840, 842, 1406
Hin1I GRCGYC 1 cut(s) 224
Hin1II CATG 5 cut(s) 191, 641, 1102, 1492, 1501
Hin6I GCGC 4 cut(s) 64, 838, 840, 1404
HinP1I GCGC 4 cut(s) 64, 838, 840, 1404
HindIII AAGCTT 1 cut(s) 1211
HpaII CCGG 5 cut(s) 42, 74, 86, 279, 753
HphI GGTGA 5 cut(s) 31, 293, 341, 452, 659
Hpy166II GTNNAC 2 cut(s) 302, 1033
Hpy188I TCNGA 8 cut(s) 103, 423, 493, 547, 742, 955, 1091, 1338
Hpy188III TCNNGA 4 cut(s) 19, 753, 1233, 1478
Hpy8I GTNNAC 2 cut(s) 302, 1033
Hpy99I CGWCG 1 cut(s) 94
HpyAV CCTTC 6 cut(s) 278, 445, 691, 985, 989, 1333
HpyCH4III ACNGT 6 cut(s) 94, 817, 1037, 1185, 1393, 1435
HpyCH4IV ACGT 1 cut(s) 432
HpyF10VI GCNNNNNNNGC 5 cut(s) 61, 837, 1319, 1436, 1492
HpyF3I CTNAG 8 cut(s) 100, 219, 294, 420, 492, 1047, 1214, 1250
HpySE526I ACGT 1 cut(s) 432
Hsp92I GRCGYC 1 cut(s) 224
Hsp92II CATG 5 cut(s) 191, 641, 1102, 1492, 1501
HspAI GCGC 4 cut(s) 64, 838, 840, 1404
Kpn2I TCCGGA 1 cut(s) 752
KroI GCCGGC 1 cut(s) 85
KroNI GCCGGC 1 cut(s) 87
Ksp22I TGATCA 1 cut(s) 1408
Kzo9I GATC 3 cut(s) 15, 103, 1408
LmnI GCTCC 5 cut(s) 21, 76, 198, 945, 1427
Lsp1109I GCAGC 2 cut(s) 853, 1470
LweI GCATC 2 cut(s) 784, 1388
MaeI CTAG 5 cut(s) 174, 240, 539, 735, 1118
MaeII ACGT 1 cut(s) 432
MalI GATC 3 cut(s) 17, 105, 1410
MboI GATC 3 cut(s) 15, 103, 1408
MfeI CAATTG 2 cut(s) 1193, 1323
MflI RGATCY 1 cut(s) 15
MhlI GDGCHC 1 cut(s) 101
MlsI TGGCCA 1 cut(s) 1010
MluNI TGGCCA 1 cut(s) 1010
MlyI GAGTC 3 cut(s) 220, 941, 1061
MmeI TCCRAC 1 cut(s) 436
Mox20I TGGCCA 1 cut(s) 1010
MreI CGCCGGCG 1 cut(s) 85
MroI TCCGGA 1 cut(s) 752
MroNI GCCGGC 1 cut(s) 85
MroXI GAANNNNTTC 1 cut(s) 345
MscI TGGCCA 1 cut(s) 1010
MseI TTAA 4 cut(s) 681, 966, 1395, 1466
Msp20I TGGCCA 1 cut(s) 1010
MspCI CTTAAG 1 cut(s) 680
MspI CCGG 5 cut(s) 42, 74, 86, 279, 753
MspR9I CCNGG 2 cut(s) 75, 438
MunI CAATTG 2 cut(s) 1193, 1323
MvaI CCWGG 1 cut(s) 438
MvnI CGCG 2 cut(s) 64, 840
MwoI GCNNNNNNNGC 5 cut(s) 61, 837, 1319, 1436, 1492
NaeI GCCGGC 1 cut(s) 87
NciI CCSGG 1 cut(s) 75
NcoI CCATGG 2 cut(s) 637, 1098
NdeI CATATG 1 cut(s) 1111
NdeII GATC 3 cut(s) 15, 103, 1408
NgoMIV GCCGGC 1 cut(s) 85
NlaIII CATG 5 cut(s) 191, 641, 1102, 1492, 1501
NlaIV GGNNCC 5 cut(s) 498, 599, 1078, 1285, 1344
NmuCI GTSAC 7 cut(s) 37, 329, 371, 440, 534, 647, 1053
PauI GCGCGC 1 cut(s) 838
PceI AGGCCT 1 cut(s) 1219
PdiI GCCGGC 1 cut(s) 87
PdmI GAANNNNTTC 1 cut(s) 345
PfeI GAWTC 8 cut(s) 424, 488, 542, 713, 956, 1092, 1443, 1474
PinAI ACCGGT 1 cut(s) 278
PkrI GCNGC 2 cut(s) 868, 1485
PleI GAGTC 3 cut(s) 219, 940, 1060
PpsI GAGTC 3 cut(s) 219, 940, 1060
PshBI ATTAAT 1 cut(s) 1466
Psp6I CCWGG 1 cut(s) 436
PspEI GGTNACC 2 cut(s) 37, 329
PspFI CCCAGC 1 cut(s) 791
PspGI CCWGG 1 cut(s) 436
PspN4I GGNNCC 5 cut(s) 498, 599, 1078, 1285, 1344
PspPI GGNCC 1 cut(s) 76
PsuI RGATCY 1 cut(s) 15
PteI GCGCGC 1 cut(s) 838
SaqAI TTAA 4 cut(s) 681, 966, 1395, 1466
SatI GCNGC 2 cut(s) 867, 1484
Sau3AI GATC 3 cut(s) 15, 103, 1408
Sau96I GGNCC 1 cut(s) 76
SchI GAGTC 3 cut(s) 220, 941, 1061
ScrFI CCNGG 2 cut(s) 75, 438
SduI GDGCHC 1 cut(s) 101
SfaNI GCATC 2 cut(s) 784, 1388
SgrAI CRCCGGYG 1 cut(s) 85
SmlI CTYRAG 3 cut(s) 680, 823, 1058
SmoI CTYRAG 3 cut(s) 680, 823, 1058
SpeI ACTAGT 1 cut(s) 239
SseBI AGGCCT 1 cut(s) 1219
SsiI CCGC 1 cut(s) 28
SspI AATATT 1 cut(s) 1258
SspMI CTAG 5 cut(s) 174, 240, 539, 735, 1118
StuI AGGCCT 1 cut(s) 1219
StyD4I CCNGG 2 cut(s) 73, 436
StyI CCWWGG 2 cut(s) 637, 1098
TaaI ACNGT 6 cut(s) 94, 817, 1037, 1185, 1393, 1435
TaiI ACGT 1 cut(s) 435
TaqI TCGA 4 cut(s) 148, 209, 621, 728
TfiI GAWTC 8 cut(s) 424, 488, 542, 713, 956, 1092, 1443, 1474
Tru1I TTAA 4 cut(s) 681, 966, 1395, 1466
Tru9I TTAA 4 cut(s) 681, 966, 1395, 1466
TscAI CASTG 3 cut(s) 73, 235, 1051
TseFI GTSAC 7 cut(s) 37, 329, 371, 440, 534, 647, 1053
TseI GCWGC 2 cut(s) 866, 1483
Tsp45I GTSAC 7 cut(s) 37, 329, 371, 440, 534, 647, 1053
TspDTI ATGAA 4 cut(s) 645, 705, 759, 875
TspGWI ACGGA 1 cut(s) 1440
TspRI CASTG 3 cut(s) 73, 235, 1051
Vha464I CTTAAG 1 cut(s) 680
VspI ATTAAT 1 cut(s) 1466
XapI RAATTY 3 cut(s) 462, 746, 1332
XmnI GAANNNNTTC 1 cut(s) 345
XspI CTAG 5 cut(s) 174, 240, 539, 735, 1118
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.