Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0003502

Physical Location & Seq

Genomic Coordinates Reverse (-)

32167798 .. 32172900

Gene Structure 5103 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0184800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1092 bp

ATGAGAAAGACAGAGGCGGTGTTCTACGCGGATACCTACCATCCGATCCAAGCCGGAAGCATCGACGGCACCGACACTCTCCCTCACGACAGCGCCGTCTATCGAGCCTGGCTTTGCTCCTCCGCCGCCCTCTATGACCCCTCCGGCGATCCCAAGCTCATCGGCGACCCCTACTGCACTCTCTTCGTCGCCCGCCTCTCTCCCCTCACCACCGAAAACACTCTTCGCCAGGCTATGAGCAAGTATGGTCGGGTTAAGAACTTGCGGTTGGTCAGGCATATTGTAACCGGTGCCTCACGTGGCTATGCTTTCGTTGAGTATGAAACCGAAAGGGAGATGCGGCGTGCATACAAGGAAGCTCACCATTCCCTTGTTGATGATTATGAAATTATCGTGGATTACAACAGACAGCAGTTGATGCCAGGATGGATTCCAAGACGATTAGGAGGGGGTTTTGGTGGTAAGAAGGAATCTGGACAACTTCGATTTGGAGGACGAGAACGACCATTTCGAGCTCCCATTCGTATCCCATATGATGATCTGGAGAAACTTGGAATCCCACCTCCACCAGAAGGGCGATACATGTCCCGGTATCAGGACCCATCCCCACCTAGAAGAAAAAGAAGCTCAGTAGATGGGGAAGAAGGTACTCACAGAAGGTCAATGGATAGGGAAGCGAACATACGCAAAACCAATCCTGCAGATAATGATGACAGGTTTCATAAAAGATCTATGGATGAGGACTACCATTCATCCAGAAGGAGCTCTGATGAGTCAGCTCAACGCCATCACAGTAGGAGCTCTAGAGATAGAGAAGGAGGTACTCACAGAAGGTCTACTGATAGGGAAGCAAGCATGCCCAAAAGCAGTCCTGTCGACAAGGAAGAGTCGTTTCGTAAAAGATCTATGGACCAGGAGGACCGTTCATTCAAAAGGAACTCCATTGAGACCGAAGAATTCCATCGCAGCAGGAGATCTGTGGACATGGAAGAGCGTTCACACAAAAGGAGCTCTAGGGATAGGGATGAGCGTTCTCACAAGCGGCACAAGTCCCGTCACTATGAGAGGTCCACTAGTTATGATCGCTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004147 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005947 GO:0006950 GO:0007154 GO:0008150 GO:0008270 GO:0009267 GO:0009295 GO:0009314 GO:0009416 GO:0009605 GO:0009628 GO:0009642 GO:0009646 GO:0009743 GO:0009744 GO:0009987 GO:0009991 GO:0010033 GO:0016407 GO:0016417 GO:0016740 GO:0016746 GO:0016747 GO:0019899 GO:0030062 GO:0030523 GO:0031625 GO:0031667 GO:0031668 GO:0031669 GO:0031974 GO:0032991 GO:0033554 GO:0034285 GO:0042221 GO:0042594 GO:0042645 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043617 GO:0044389 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045239 GO:0045240 GO:0046872 GO:0046914 GO:0050896 GO:0051716 GO:0070013 GO:0071496 GO:0098798 GO:1901700 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00280 ko00640 ko01100 ko01110 ko01130 map00280 map00640 map01100 map01110 map01130

Pfam Domains

Protein Families

2-oxoacid_dh Biotin_lipoyl E3_binding

Protein Analysis

363

Amino Acids

42.47

Weight (kDa)

9.67

Isoelectric Point (pI)

87.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	61 - 130	2.1e-17	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003502)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31570 AT2G43350 AT2G43350
fragaria_vesca	FvH4_6g25700
malus_domestica	MD04G1034400.v1.1 MD14G1027000.v1.1
prunus_persica	Prupe.1G186500_v2.0.a1 Prupe.1G186500_v2.0.a1
pyrus_communis	pycom14g02570
rosa_chinensis	RchiOBHm_Chr4g0400261 RchiOBHm_Chr4g0408201
rosa_laevigata	RLG00000008663 RLG00000015280
rosa_multiflora	Rmu_sc0001793.1_g000052 Rmu_sc0005466.1_g000001 Rmu_sc0007120.1_g000003
rosa_roxburghii	Rroxscaffold_1G00024180 Rroxscaffold_1G00051140 Rroxscaffold_4G00316840 Rroxscaffold_5G00352710 Rroxscaffold_5G00361080
rosa_rugosa	Rorug04G0084100 Rorug04G0184800
rosa_samantha	Rh1CG015500 Rh2AG152400 Rh2BG157900 Rh3BG160500 Rh4AG149100 Rh4BG145700 Rh4CG156100 Rh4DG142100 Rh5BG054800
rosa_wichuraiana	Rw1G001130 Rw3G028070 Rw4G012170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	95
AccB1I	GGYRCC	2 cut(s)	68, 290
AccI	GTMKAC	2 cut(s)	836, 876
AccII	CGCG	1 cut(s)	29
AciI	CCGC	8 cut(s)	17, 29, 123, 126, 193, 265, 340, 1042
AclWI	GGATC	2 cut(s)	40, 143
AcsI	RAATTY	1 cut(s)	956
AcvI	CACGTG	1 cut(s)	299
AfaI	GTAC	2 cut(s)	649, 823
AfiI	CCNNNNNNNGG	2 cut(s)	572, 595
AflIII	ACRYGT	1 cut(s)	582
AgeI	ACCGGT	1 cut(s)	287
AgsI	TTSAA	1 cut(s)	931
AhlI	ACTAGT	1 cut(s)	1073
AjnI	CCWGG	4 cut(s)	107, 228, 421, 912
AjuI	GAANNNNNNNTTGG	2 cut(s)	251, 283
AluBI	AGCT	8 cut(s)	157, 359, 515, 627, 765, 779, 801, 1011
AluI	AGCT	8 cut(s)	157, 359, 515, 627, 765, 779, 801, 1011
Alw21I	GWGCWC	4 cut(s)	517, 767, 803, 1013
Alw26I	GTCTC	1 cut(s)	941
AlwI	GGATC	2 cut(s)	40, 143
ApeKI	GCWGC	1 cut(s)	966
ApoI	RAATTY	1 cut(s)	956
AsiGI	ACCGGT	1 cut(s)	287
AspLEI	GCGC	1 cut(s)	95
AspS9I	GGNCC	4 cut(s)	598, 910, 919, 1068
AsuC2I	CCSGG	1 cut(s)	589
AsuHPI	GGTGA	2 cut(s)	199, 353
AvaII	GGWCC	4 cut(s)	598, 910, 919, 1068
BanI	GGYRCC	2 cut(s)	68, 290
BanII	GRGCYC	4 cut(s)	517, 767, 803, 1013
BarI	GAAGNNNNNNTAC	2 cut(s)	666, 698
BbrPI	CACGTG	1 cut(s)	299
Bbv12I	GWGCWC	4 cut(s)	517, 767, 803, 1013
BbvI	GCAGC	1 cut(s)	978
BccI	CCATC	6 cut(s)	48, 420, 610, 629, 795, 969
BceAI	ACGGC	2 cut(s)	80, 82
BcgI	CGANNNNNNTGC	4 cut(s)	166, 200, 856, 890
BciT130I	CCWGG	4 cut(s)	109, 230, 423, 914
BciVI	GTATCC	2 cut(s)	25, 536
BcnI	CCSGG	1 cut(s)	589
BcoDI	GTCTC	1 cut(s)	941
BcuI	ACTAGT	1 cut(s)	1073
BfaI	CTAG	4 cut(s)	612, 804, 1014, 1074
BfmI	CTRYAG	1 cut(s)	699
BfoI	RGCGCY	1 cut(s)	96
BfuI	GTATCC	2 cut(s)	25, 536
BglII	AGATCT	3 cut(s)	728, 902, 974
BisI	GCNGC	4 cut(s)	126, 341, 967, 1043
BlsI	GCNGC	4 cut(s)	127, 342, 968, 1044
Bme1390I	CCNGG	5 cut(s)	109, 230, 423, 589, 914
Bme18I	GGWCC	4 cut(s)	598, 910, 919, 1068
BmgT120I	GGNCC	4 cut(s)	598, 910, 919, 1068
BmiI	GGNNCC	3 cut(s)	70, 292, 600
BmrFI	CCNGG	5 cut(s)	109, 230, 423, 589, 914
BmsI	GCATC	3 cut(s)	69, 327, 408
BpmI	CTGGAG	1 cut(s)	563
BpuMI	CCSGG	1 cut(s)	589
BsaAI	YACGTR	1 cut(s)	299
BsaI	GGTCTC	1 cut(s)	941
BsaWI	WCCGGW	1 cut(s)	287
Bsc4I	CCNNNNNNNGG	2 cut(s)	572, 595
Bse118I	RCCGGY	1 cut(s)	287
BseBI	CCWGG	4 cut(s)	109, 230, 423, 914
BseGI	GGATG	6 cut(s)	40, 431, 602, 742, 752, 1030
BseLI	CCNNNNNNNGG	2 cut(s)	572, 595
BseMII	CTCAG	1 cut(s)	642
BseRI	GAGGAG	1 cut(s)	109
BseXI	GCAGC	1 cut(s)	978
BsgI	GTGCAG	1 cut(s)	160
Bsh1236I	CGCG	1 cut(s)	29
BshNI	GGYRCC	2 cut(s)	68, 290
BshTI	ACCGGT	1 cut(s)	287
BsiHKAI	GWGCWC	4 cut(s)	517, 767, 803, 1013
BsiSI	CCGG	4 cut(s)	54, 144, 288, 589
BslFI	GGGAC	2 cut(s)	571, 1036
BslI	CCNNNNNNNGG	2 cut(s)	572, 595
BsmAI	GTCTC	1 cut(s)	941
BsmFI	GGGAC	2 cut(s)	571, 1036
Bso31I	GGTCTC	1 cut(s)	941
Bsp1286I	GDGCHC	4 cut(s)	517, 767, 803, 1013
Bsp143I	GATC	7 cut(s)	45, 148, 538, 728, 902, 974, 1081
BspACI	CCGC	8 cut(s)	17, 29, 123, 126, 193, 265, 340, 1042
BspCNI	CTCAG	1 cut(s)	641
BspFNI	CGCG	1 cut(s)	29
BspLI	GGNNCC	3 cut(s)	70, 292, 600
BspMAI	CTGCAG	1 cut(s)	703
BspPI	GGATC	2 cut(s)	40, 143
BspQI	GCTCTTC	1 cut(s)	984
BspT107I	GGYRCC	2 cut(s)	68, 290
BspTNI	GGTCTC	1 cut(s)	941
BsrFI	RCCGGY	1 cut(s)	287
BssAI	RCCGGY	1 cut(s)	287
BssMI	GATC	7 cut(s)	45, 148, 538, 728, 902, 974, 1081
Bst2UI	CCWGG	4 cut(s)	109, 230, 423, 914
Bst4CI	ACNGT	2 cut(s)	794, 923
Bst6I	CTCTTC	4 cut(s)	188, 228, 879, 984
BstAPI	GCANNNNNTGC	1 cut(s)	418
BstBAI	YACGTR	1 cut(s)	299
BstC8I	GCNNGC	4 cut(s)	193, 345, 853, 857
BstDEI	CTNAG	1 cut(s)	628
BstF5I	GGATG	6 cut(s)	40, 431, 602, 742, 752, 1030
BstFNI	CGCG	1 cut(s)	29
BstH2I	RGCGCY	1 cut(s)	96
BstHHI	GCGC	1 cut(s)	95
BstKTI	GATC	7 cut(s)	48, 151, 541, 731, 905, 977, 1084
BstMAI	GTCTC	1 cut(s)	941
BstMBI	GATC	7 cut(s)	45, 148, 538, 728, 902, 974, 1081
BstMWI	GCNNNNNNNGC	2 cut(s)	66, 418
BstNI	CCWGG	4 cut(s)	109, 230, 423, 914
BstNSI	RCATGY	2 cut(s)	586, 859
BstSCI	CCNGG	5 cut(s)	107, 228, 421, 587, 912
BstSFI	CTRYAG	1 cut(s)	699
BstUI	CGCG	1 cut(s)	29
BstV1I	GCAGC	1 cut(s)	978
BstX2I	RGATCY	3 cut(s)	728, 902, 974
BstYI	RGATCY	3 cut(s)	728, 902, 974
BsuI	GTATCC	2 cut(s)	25, 536
BtgZI	GCGATG	1 cut(s)	947
BtsCI	GGATG	6 cut(s)	40, 431, 602, 742, 752, 1030
Cac8I	GCNNGC	4 cut(s)	193, 345, 853, 857
CfoI	GCGC	1 cut(s)	95
Cfr10I	RCCGGY	1 cut(s)	287
Cfr13I	GGNCC	4 cut(s)	598, 910, 919, 1068
Csp6I	GTAC	2 cut(s)	648, 822
CspAI	ACCGGT	1 cut(s)	287
CviAII	CATG	3 cut(s)	583, 856, 985
CviQI	GTAC	2 cut(s)	648, 822
DdeI	CTNAG	1 cut(s)	628
DpnI	GATC	7 cut(s)	47, 150, 540, 730, 904, 976, 1083
DpnII	GATC	7 cut(s)	45, 148, 538, 728, 902, 974, 1081
DrdI	GACNNNNNNGTC	1 cut(s)	95
DseDI	GACNNNNNNGTC	1 cut(s)	95
Eam1104I	CTCTTC	4 cut(s)	188, 228, 879, 984
EarI	CTCTTC	4 cut(s)	188, 228, 879, 984
EciI	GGCGGA	1 cut(s)	112
Ecl136II	GAGCTC	4 cut(s)	515, 765, 801, 1011
Eco24I	GRGCYC	4 cut(s)	517, 767, 803, 1013
Eco31I	GGTCTC	1 cut(s)	941
Eco47I	GGWCC	4 cut(s)	598, 910, 919, 1068
Eco53kI	GAGCTC	4 cut(s)	515, 765, 801, 1011
Eco72I	CACGTG	1 cut(s)	299
EcoICRI	GAGCTC	4 cut(s)	515, 765, 801, 1011
EcoO109I	RGGNCCY	1 cut(s)	598
EcoRI	GAATTC	1 cut(s)	956
EcoRII	CCWGG	4 cut(s)	107, 228, 421, 912
EcoT38I	GRGCYC	4 cut(s)	517, 767, 803, 1013
FaeI	CATG	3 cut(s)	586, 859, 988
FaqI	GGGAC	2 cut(s)	571, 1036
FatI	CATG	3 cut(s)	582, 855, 984
FauI	CCCGC	1 cut(s)	200
FauNDI	CATATG	1 cut(s)	532
FblI	GTMKAC	2 cut(s)	836, 876
Fnu4HI	GCNGC	4 cut(s)	126, 341, 967, 1043
FokI	GGATG	6 cut(s)	27, 438, 589, 739, 749, 1037
FriOI	GRGCYC	4 cut(s)	517, 767, 803, 1013
Fsp4HI	GCNGC	4 cut(s)	126, 341, 967, 1043
FspBI	CTAG	4 cut(s)	612, 804, 1014, 1074
GlaI	GCGC	1 cut(s)	94
GluI	GCNGC	4 cut(s)	126, 341, 967, 1043
GsuI	CTGGAG	1 cut(s)	563
HaeII	RGCGCY	1 cut(s)	96
HapII	CCGG	4 cut(s)	54, 144, 288, 589
HhaI	GCGC	1 cut(s)	95
Hin1II	CATG	3 cut(s)	586, 859, 988
Hin6I	GCGC	1 cut(s)	93
HinP1I	GCGC	1 cut(s)	93
HincII	GTYRAC	1 cut(s)	877
HindII	GTYRAC	1 cut(s)	877
HinfI	GANTC	5 cut(s)	430, 470, 555, 773, 887
HpaII	CCGG	4 cut(s)	54, 144, 288, 589
HphI	GGTGA	2 cut(s)	199, 353
Hpy166II	GTNNAC	5 cut(s)	837, 877, 982, 998, 1071
Hpy188I	TCNGA	2 cut(s)	45, 769
Hpy188III	TCNNGA	6 cut(s)	86, 474, 542, 596, 756, 804
Hpy8I	GTNNAC	5 cut(s)	837, 877, 982, 998, 1071
Hpy99I	CGWCG	2 cut(s)	68, 191
HpyAV	CCTTC	7 cut(s)	460, 566, 638, 651, 753, 809, 825
HpyCH4III	ACNGT	2 cut(s)	794, 923
HpyCH4IV	ACGT	1 cut(s)	298
HpyCH4V	TGCA	3 cut(s)	177, 347, 701
HpyF10VI	GCNNNNNNNGC	2 cut(s)	66, 418
HpyF3I	CTNAG	1 cut(s)	628
HpySE526I	ACGT	1 cut(s)	298
Hsp92II	CATG	3 cut(s)	586, 859, 988
HspAI	GCGC	1 cut(s)	93
Kzo9I	GATC	7 cut(s)	45, 148, 538, 728, 902, 974, 1081
LguI	GCTCTTC	1 cut(s)	984
LmnI	GCTCC	5 cut(s)	122, 520, 762, 798, 1008
Lsp1109I	GCAGC	1 cut(s)	978
LweI	GCATC	3 cut(s)	69, 327, 408
MaeI	CTAG	4 cut(s)	612, 804, 1014, 1074
MaeII	ACGT	1 cut(s)	298
MaeIII	GTNAC	2 cut(s)	283, 1055
MalI	GATC	7 cut(s)	47, 150, 540, 730, 904, 976, 1083
MboI	GATC	7 cut(s)	45, 148, 538, 728, 902, 974, 1081
MboII	GAAGA	7 cut(s)	175, 215, 627, 653, 896, 965, 1001
MflI	RGATCY	3 cut(s)	728, 902, 974
MhlI	GDGCHC	4 cut(s)	517, 767, 803, 1013
MluCI	AATT	2 cut(s)	387, 956
MlyI	GAGTC	2 cut(s)	782, 896
MseI	TTAA	2 cut(s)	255, 1090
MspI	CCGG	4 cut(s)	54, 144, 288, 589
MspR9I	CCNGG	5 cut(s)	109, 230, 423, 589, 914
MvaI	CCWGG	4 cut(s)	109, 230, 423, 914
MvnI	CGCG	1 cut(s)	29
MwoI	GCNNNNNNNGC	2 cut(s)	66, 418
NciI	CCSGG	1 cut(s)	589
NdeI	CATATG	1 cut(s)	532
NdeII	GATC	7 cut(s)	45, 148, 538, 728, 902, 974, 1081
NlaIII	CATG	3 cut(s)	586, 859, 988
NlaIV	GGNNCC	3 cut(s)	70, 292, 600
NmuCI	GTSAC	1 cut(s)	1055
NspI	RCATGY	2 cut(s)	586, 859
PaeI	GCATGC	1 cut(s)	859
PciI	ACATGT	1 cut(s)	582
PciSI	GCTCTTC	1 cut(s)	984
PcsI	WCGNNNNNNNCGW	3 cut(s)	69, 93, 508
PfeI	GAWTC	3 cut(s)	430, 470, 555
PinAI	ACCGGT	1 cut(s)	287
PkrI	GCNGC	4 cut(s)	127, 342, 968, 1044
PleI	GAGTC	2 cut(s)	781, 895
PmaCI	CACGTG	1 cut(s)	299
PmlI	CACGTG	1 cut(s)	299
PpsI	GAGTC	2 cut(s)	781, 895
Ppu21I	YACGTR	1 cut(s)	299
PpuMI	RGGWCCY	1 cut(s)	598
PscI	ACATGT	1 cut(s)	582
Psp124BI	GAGCTC	4 cut(s)	517, 767, 803, 1013
Psp5II	RGGWCCY	1 cut(s)	598
Psp6I	CCWGG	4 cut(s)	107, 228, 421, 912
PspCI	CACGTG	1 cut(s)	299
PspGI	CCWGG	4 cut(s)	107, 228, 421, 912
PspN4I	GGNNCC	3 cut(s)	70, 292, 600
PspPI	GGNCC	4 cut(s)	598, 910, 919, 1068
PspPPI	RGGWCCY	1 cut(s)	598
PstI	CTGCAG	1 cut(s)	703
PsuI	RGATCY	3 cut(s)	728, 902, 974
RsaI	GTAC	2 cut(s)	649, 823
RsaNI	GTAC	2 cut(s)	648, 822
SacI	GAGCTC	4 cut(s)	517, 767, 803, 1013
SalI	GTCGAC	1 cut(s)	875
SapI	GCTCTTC	1 cut(s)	984
SaqAI	TTAA	2 cut(s)	255, 1090
SatI	GCNGC	4 cut(s)	126, 341, 967, 1043
Sau3AI	GATC	7 cut(s)	45, 148, 538, 728, 902, 974, 1081
Sau96I	GGNCC	4 cut(s)	598, 910, 919, 1068
SchI	GAGTC	2 cut(s)	782, 896
ScrFI	CCNGG	5 cut(s)	109, 230, 423, 589, 914
SduI	GDGCHC	4 cut(s)	517, 767, 803, 1013
SfaNI	GCATC	3 cut(s)	69, 327, 408
SfcI	CTRYAG	1 cut(s)	699
SinI	GGWCC	4 cut(s)	598, 910, 919, 1068
SpeI	ACTAGT	1 cut(s)	1073
SphI	GCATGC	1 cut(s)	859
Sse9I	AATT	2 cut(s)	387, 956
SsiI	CCGC	8 cut(s)	17, 29, 123, 126, 193, 265, 340, 1042
SspMI	CTAG	4 cut(s)	612, 804, 1014, 1074
SstI	GAGCTC	4 cut(s)	517, 767, 803, 1013
StyD4I	CCNGG	5 cut(s)	107, 228, 421, 587, 912
TaaI	ACNGT	2 cut(s)	794, 923
TaiI	ACGT	1 cut(s)	301
TaqI	TCGA	5 cut(s)	63, 103, 484, 511, 876
TaqII	GACCGA	1 cut(s)	965
TasI	AATT	2 cut(s)	387, 956
TauI	GCSGC	3 cut(s)	128, 343, 1045
TfiI	GAWTC	3 cut(s)	430, 470, 555
Tru1I	TTAA	2 cut(s)	255, 1090
Tru9I	TTAA	2 cut(s)	255, 1090
TseFI	GTSAC	1 cut(s)	1055
TseI	GCWGC	1 cut(s)	966
Tsp45I	GTSAC	1 cut(s)	1055
TspDTI	ATGAA	5 cut(s)	336, 399, 710, 741, 915
VpaK11BI	GGWCC	4 cut(s)	598, 910, 919, 1068
XapI	RAATTY	1 cut(s)	956
XbaI	TCTAGA	1 cut(s)	803
XceI	RCATGY	2 cut(s)	586, 859
XmiI	GTMKAC	2 cut(s)	836, 876
XspI	CTAG	4 cut(s)	612, 804, 1014, 1074

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.