Rroxscaffold_4G00316840

Glutathione peroxidase

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
Physical Location & Seq
Reverse (-)
41772592 .. 41774523
1932 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_4G00316840.1

Sequence Viewer

Length: 240 bp
ATGATATTCAGTAATATTTTCCAATTTCTAGTTGACAGAGATGAGAAAGTTTCTTATCGCTATTACCCTACAACTGCCACCATTAGCCTTAAGCATAACATAAAGACAGCTGTTGGGAGTCTCATGAAGTCTTCGATGGGGTCTCAGCACAGTCAAGCAGTATGCATATGCTTGCCTTTTGTGTACCGAAAGGAAAAAATGAAAATTGAAAAGCTTGCTTTGTGTACCAAGACTTGTTAA

Protein Analysis

79

Amino Acids

9.07

Weight (kDa)

9.48

Isoelectric Point (pI)

39.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 2 cut(s) 185, 226
AflII CTTAAG 1 cut(s) 89
AgsI TTSAA 1 cut(s) 209
AluBI AGCT 2 cut(s) 110, 214
AluI AGCT 2 cut(s) 110, 214
Alw26I GTCTC 2 cut(s) 125, 147
BbsI GAAGAC 1 cut(s) 123
BccI CCATC 1 cut(s) 130
BcoDI GTCTC 2 cut(s) 125, 147
BfaI CTAG 1 cut(s) 29
BfrI CTTAAG 1 cut(s) 89
BpiI GAAGAC 1 cut(s) 123
BsaI GGTCTC 1 cut(s) 147
BseMII CTCAG 1 cut(s) 158
BsmAI GTCTC 2 cut(s) 125, 147
Bso31I GGTCTC 1 cut(s) 147
BspCNI CTCAG 1 cut(s) 157
BspHI TCATGA 1 cut(s) 123
BspTI CTTAAG 1 cut(s) 89
BspTNI GGTCTC 1 cut(s) 147
Bst4CI ACNGT 1 cut(s) 152
BstAFI CTTAAG 1 cut(s) 89
BstC8I GCNNGC 2 cut(s) 173, 216
BstDEI CTNAG 1 cut(s) 144
BstMAI GTCTC 2 cut(s) 125, 147
BstV2I GAAGAC 1 cut(s) 123
Cac8I GCNNGC 2 cut(s) 173, 216
CciI TCATGA 1 cut(s) 123
Csp6I GTAC 2 cut(s) 184, 225
CviAII CATG 1 cut(s) 124
CviJI RGCY 3 cut(s) 87, 110, 214
CviKI_1 RGCY 3 cut(s) 87, 110, 214
CviQI GTAC 2 cut(s) 184, 225
DdeI CTNAG 1 cut(s) 144
Eco31I GGTCTC 1 cut(s) 147
EcoT22I ATGCAT 1 cut(s) 167
FaeI CATG 1 cut(s) 127
FaiI YATR 6 cut(s) 96, 101, 125, 163, 167, 169
FatI CATG 1 cut(s) 123
FauNDI CATATG 1 cut(s) 167
FspBI CTAG 1 cut(s) 29
Hin1II CATG 1 cut(s) 127
HincII GTYRAC 1 cut(s) 34
HindII GTYRAC 1 cut(s) 34
HindIII AAGCTT 1 cut(s) 212
HinfI GANTC 1 cut(s) 118
Hpy166II GTNNAC 3 cut(s) 34, 184, 225
Hpy188III TCNNGA 1 cut(s) 124
Hpy8I GTNNAC 3 cut(s) 34, 184, 225
HpyCH4III ACNGT 1 cut(s) 152
HpyCH4V TGCA 1 cut(s) 165
HpyF3I CTNAG 1 cut(s) 144
Hsp92II CATG 1 cut(s) 127
MaeI CTAG 1 cut(s) 29
MboII GAAGA 1 cut(s) 123
MluCI AATT 2 cut(s) 23, 204
MlyI GAGTC 1 cut(s) 127
Mph1103I ATGCAT 1 cut(s) 167
MseI TTAA 2 cut(s) 90, 238
MspA1I CMGCKG 1 cut(s) 110
MspCI CTTAAG 1 cut(s) 89
NdeI CATATG 1 cut(s) 167
NlaIII CATG 1 cut(s) 127
NsiI ATGCAT 1 cut(s) 167
PagI TCATGA 1 cut(s) 123
PleI GAGTC 1 cut(s) 126
PpsI GAGTC 1 cut(s) 126
PvuII CAGCTG 1 cut(s) 110
RsaI GTAC 2 cut(s) 185, 226
RsaNI GTAC 2 cut(s) 184, 225
SaqAI TTAA 2 cut(s) 90, 238
SchI GAGTC 1 cut(s) 127
SetI ASST 2 cut(s) 112, 216
SgeI CNNG 5 cut(s) 41, 136, 167, 184, 227
SmlI CTYRAG 1 cut(s) 89
SmoI CTYRAG 1 cut(s) 89
Sse9I AATT 2 cut(s) 23, 204
SspI AATATT 1 cut(s) 16
SspMI CTAG 1 cut(s) 29
TaaI ACNGT 1 cut(s) 152
TaqI TCGA 1 cut(s) 134
TasI AATT 2 cut(s) 23, 204
Tru1I TTAA 2 cut(s) 90, 238
Tru9I TTAA 2 cut(s) 90, 238
TspDTI ATGAA 2 cut(s) 140, 215
Vha464I CTTAAG 1 cut(s) 89
XspI CTAG 1 cut(s) 29
Zsp2I ATGCAT 1 cut(s) 167
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.