Rmu_sc0001793.1_g000052

Belongs to the glutathione peroxidase family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001793.1
Physical Location & Seq
Forward (+)
227973 .. 231049
3077 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001793.1_g000052.1.cds

Sequence Viewer

Length: 492 bp
atgatggcccacggaaaagtcagtctcgctcaagaactcctcccctcgccgatcttctccgccaccaaagatgtctcaaactcggagatggcacagagggaagagttcgagatgagcattgcaggaactggagaggatgaggctcccttttacaaggtcttaaaattggagaaaggtggtctctttggaaatggcatcaaatggaactttaccaagtttttggtaaacaaagaagggaaggttgtggagagatatgctcccgtgacagcacctctcaaaattgaggatctacagacagaagacatggggatggttaaagaaaacatagggaagaaagtgaaaaagaagattatgaagaagaagcaaaaattattcatgttagatctacagacagaagacatggggatggttaaagaaaacatagggaagaaagtgaaaaagaagattatgaagaagaagcaaaaattccaacgaggaagaaaaaggatatga

Protein Analysis

163

Amino Acids

18.64

Weight (kDa)

9.87

Isoelectric Point (pI)

42.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 60
AclWI GGATC 1 cut(s) 294
AcsI RAATTY 1 cut(s) 464
Alw26I GTCTC 3 cut(s) 29, 79, 185
AlwI GGATC 1 cut(s) 294
AlwNI CAGNNNCTG 1 cut(s) 128
AoxI GGCC 1 cut(s) 6
ApoI RAATTY 1 cut(s) 464
AspS9I GGNCC 1 cut(s) 7
BbsI GAAGAC 2 cut(s) 306, 402
BccI CCATC 3 cut(s) 82, 304, 400
BcoDI GTCTC 3 cut(s) 29, 79, 185
BfmI CTRYAG 2 cut(s) 290, 386
BglII AGATCT 1 cut(s) 382
BmgT120I GGNCC 1 cut(s) 7
BmiI GGNNCC 1 cut(s) 144
BmsI GCATC 1 cut(s) 204
BpiI GAAGAC 2 cut(s) 306, 402
BplI GAGNNNNNCTC 2 cut(s) 241, 273
BpmI CTGGAG 1 cut(s) 150
BpuEI CTTGAG 1 cut(s) 15
BsaI GGTCTC 1 cut(s) 185
BsaJI CCNNGG 1 cut(s) 10
Bse1I ACTGG 1 cut(s) 133
Bse3DI GCAATG 1 cut(s) 117
BseDI CCNNGG 1 cut(s) 10
BseGI GGATG 3 cut(s) 142, 315, 411
BseMI GCAATG 1 cut(s) 117
BseNI ACTGG 1 cut(s) 133
BseRI GAGGAG 1 cut(s) 29
BshFI GGCC 1 cut(s) 8
BsmAI GTCTC 3 cut(s) 29, 79, 185
BsnI GGCC 1 cut(s) 8
Bso31I GGTCTC 1 cut(s) 185
Bsp143I GATC 3 cut(s) 51, 286, 382
BspACI CCGC 1 cut(s) 60
BspANI GGCC 1 cut(s) 8
BspLI GGNNCC 1 cut(s) 144
BspPI GGATC 1 cut(s) 294
BspTNI GGTCTC 1 cut(s) 185
BsrDI GCAATG 1 cut(s) 117
BsrI ACTGG 1 cut(s) 133
BssECI CCNNGG 1 cut(s) 10
BssMI GATC 3 cut(s) 51, 286, 382
Bst6I CTCTTC 1 cut(s) 96
BstDSI CCRYGG 1 cut(s) 10
BstF5I GGATG 3 cut(s) 142, 315, 411
BstKTI GATC 3 cut(s) 54, 289, 385
BstMAI GTCTC 3 cut(s) 29, 79, 185
BstMBI GATC 3 cut(s) 51, 286, 382
BstSFI CTRYAG 2 cut(s) 290, 386
BstV2I GAAGAC 2 cut(s) 306, 402
BstX2I RGATCY 2 cut(s) 286, 382
BstXI CCANNNNNNTGG 1 cut(s) 220
BstYI RGATCY 2 cut(s) 286, 382
BsuRI GGCC 1 cut(s) 8
BtgI CCRYGG 1 cut(s) 10
BtsCI GGATG 3 cut(s) 142, 315, 411
CaiI CAGNNNCTG 1 cut(s) 128
Cfr13I GGNCC 1 cut(s) 7
CviAII CATG 3 cut(s) 304, 376, 400
CviJI RGCY 2 cut(s) 8, 143
CviKI_1 RGCY 2 cut(s) 8, 143
DpnI GATC 3 cut(s) 53, 288, 384
DpnII GATC 3 cut(s) 51, 286, 382
Eam1104I CTCTTC 1 cut(s) 96
EarI CTCTTC 1 cut(s) 96
EciI GGCGGA 1 cut(s) 49
Eco31I GGTCTC 1 cut(s) 185
FaeI CATG 3 cut(s) 307, 379, 403
FaiI YATR 9 cut(s) 255, 305, 326, 353, 377, 401, 422, 449, 490
FatI CATG 3 cut(s) 303, 375, 399
FokI GGATG 3 cut(s) 149, 322, 418
GsuI CTGGAG 1 cut(s) 150
HaeIII GGCC 1 cut(s) 8
Hin1II CATG 3 cut(s) 307, 379, 403
Hpy166II GTNNAC 1 cut(s) 226
Hpy188I TCNGA 1 cut(s) 85
Hpy188III TCNNGA 2 cut(s) 32, 109
Hpy8I GTNNAC 1 cut(s) 226
HpyAV CCTTC 2 cut(s) 227, 232
HpyCH4V TGCA 1 cut(s) 122
Hsp92II CATG 3 cut(s) 307, 379, 403
Kzo9I GATC 3 cut(s) 51, 286, 382
LmnI GCTCC 2 cut(s) 148, 262
LpnPI CCDG 2 cut(s) 108, 114
LweI GCATC 1 cut(s) 204
MaeIII GTNAC 1 cut(s) 262
MalI GATC 3 cut(s) 53, 288, 384
MboI GATC 3 cut(s) 51, 286, 382
MflI RGATCY 2 cut(s) 286, 382
MluCI AATT 4 cut(s) 164, 279, 368, 464
MnlI CCTC 8 cut(s) 50, 55, 90, 127, 133, 277, 282, 467
MseI TTAA 3 cut(s) 161, 315, 411
MslI CAYNNNNRTG 2 cut(s) 308, 404
NdeII GATC 3 cut(s) 51, 286, 382
NlaIII CATG 3 cut(s) 307, 379, 403
NlaIV GGNNCC 1 cut(s) 144
NmuCI GTSAC 1 cut(s) 262
PspN4I GGNNCC 1 cut(s) 144
PspPI GGNCC 1 cut(s) 7
PstNI CAGNNNCTG 1 cut(s) 128
PsuI RGATCY 2 cut(s) 286, 382
RseI CAYNNNNRTG 2 cut(s) 308, 404
SaqAI TTAA 3 cut(s) 161, 315, 411
Sau3AI GATC 3 cut(s) 51, 286, 382
Sau96I GGNCC 1 cut(s) 7
SetI ASST 4 cut(s) 159, 178, 243, 274
SfaNI GCATC 1 cut(s) 204
SfcI CTRYAG 2 cut(s) 290, 386
SmiMI CAYNNNNRTG 2 cut(s) 308, 404
SmlI CTYRAG 1 cut(s) 30
SmoI CTYRAG 1 cut(s) 30
Sse9I AATT 4 cut(s) 164, 279, 368, 464
SsiI CCGC 1 cut(s) 60
TaqI TCGA 1 cut(s) 108
TasI AATT 4 cut(s) 164, 279, 368, 464
Tru1I TTAA 3 cut(s) 161, 315, 411
Tru9I TTAA 3 cut(s) 161, 315, 411
TseFI GTSAC 1 cut(s) 262
Tsp45I GTSAC 1 cut(s) 262
TspDTI ATGAA 3 cut(s) 364, 368, 464
TspGWI ACGGA 1 cut(s) 27
XapI RAATTY 1 cut(s) 464
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.