Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003502

Physical Location & Seq

Genomic Coordinates Forward (+)

17804854 .. 17806489

Gene Structure 1636 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ37231

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

ATGTTACTTCAAAATGGTTTTAAGATCATGGCATTTCCTTGCAACCAATTTGCAGGACAAGAAGTTTCCTGGAATGAGGAGATTCAGGAAGTTGCATGTACGAAGTTGAAAGCTGAATTTCCAATCTTTGACAAGGGTGAGGCTCCCCTTTACAAGGTCTTAAAATTGGAGAAAGGTGGTCTCTTTGGAAATGGCATCAAATGGAACTTTACCAAGTTTTTGGTAAACAAAGAAGGGAAGGTTGTGGAGAGATATGCTCCCGTGACAGCACCTCTCAAAATTGAGAAAGACATCCAGAATCTATTGGAATCTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0016020 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00480 ko00590 ko04918 map00480 map00590 map04918

Pfam Domains

Protein Families

GSHPx

Protein Analysis

105

Amino Acids

11.9

Weight (kDa)

7.7

Isoelectric Point (pI)

35.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GSHPx	PF00255	4 - 47	2.8e-11	Glutathione peroxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0003502)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31570 AT2G43350 AT2G43350
fragaria_vesca	FvH4_6g25700
malus_domestica	MD04G1034400.v1.1 MD14G1027000.v1.1
prunus_persica	Prupe.1G186500_v2.0.a1 Prupe.1G186500_v2.0.a1
pyrus_communis	pycom14g02570
rosa_chinensis	RchiOBHm_Chr4g0400261 RchiOBHm_Chr4g0408201
rosa_laevigata	RLG00000008663 RLG00000015280
rosa_multiflora	Rmu_sc0001793.1_g000052 Rmu_sc0005466.1_g000001 Rmu_sc0007120.1_g000003
rosa_roxburghii	Rroxscaffold_1G00024180 Rroxscaffold_1G00051140 Rroxscaffold_4G00316840 Rroxscaffold_5G00352710 Rroxscaffold_5G00361080
rosa_rugosa	Rorug04G0084100 Rorug04G0184800
rosa_samantha	Rh1CG015500 Rh2AG152400 Rh2BG157900 Rh3BG160500 Rh4AG149100 Rh4BG145700 Rh4CG156100 Rh4DG142100 Rh5BG054800
rosa_wichuraiana	Rw1G001130 Rw3G028070 Rw4G012170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	116
AfaI	GTAC	1 cut(s)	100
AfiI	CCNNNNNNNGG	1 cut(s)	154
AgsI	TTSAA	2 cut(s)	11, 109
AjnI	CCWGG	1 cut(s)	68
AluBI	AGCT	1 cut(s)	113
AluI	AGCT	1 cut(s)	113
Alw26I	GTCTC	1 cut(s)	185
ApoI	RAATTY	1 cut(s)	116
AsuHPI	GGTGA	1 cut(s)	149
BciT130I	CCWGG	1 cut(s)	70
BcoDI	GTCTC	1 cut(s)	185
Bme1390I	CCNGG	1 cut(s)	70
BmiI	GGNNCC	1 cut(s)	144
BmrFI	CCNGG	1 cut(s)	70
BmsI	GCATC	1 cut(s)	204
BplI	GAGNNNNNCTC	2 cut(s)	241, 273
BsaI	GGTCTC	1 cut(s)	185
Bsc4I	CCNNNNNNNGG	1 cut(s)	154
BseBI	CCWGG	1 cut(s)	70
BseGI	GGATG	1 cut(s)	291
BseLI	CCNNNNNNNGG	1 cut(s)	154
BseRI	GAGGAG	1 cut(s)	92
BslI	CCNNNNNNNGG	1 cut(s)	154
BsmAI	GTCTC	1 cut(s)	185
Bso31I	GGTCTC	1 cut(s)	185
Bsp143I	GATC	1 cut(s)	24
BspLI	GGNNCC	1 cut(s)	144
BspTNI	GGTCTC	1 cut(s)	185
BssMI	GATC	1 cut(s)	24
Bst2UI	CCWGG	1 cut(s)	70
BstENI	CCTNNNNNAGG	1 cut(s)	152
BstF5I	GGATG	1 cut(s)	291
BstKTI	GATC	1 cut(s)	27
BstMAI	GTCTC	1 cut(s)	185
BstMBI	GATC	1 cut(s)	24
BstNI	CCWGG	1 cut(s)	70
BstNSI	RCATGY	1 cut(s)	99
BstSCI	CCNGG	1 cut(s)	68
BstXI	CCANNNNNNTGG	1 cut(s)	220
BtsCI	GGATG	1 cut(s)	291
Csp6I	GTAC	1 cut(s)	99
CviAII	CATG	2 cut(s)	28, 96
CviJI	RGCY	2 cut(s)	113, 143
CviKI_1	RGCY	2 cut(s)	113, 143
CviQI	GTAC	1 cut(s)	99
DpnI	GATC	1 cut(s)	26
DpnII	GATC	1 cut(s)	24
Eco31I	GGTCTC	1 cut(s)	185
EcoNI	CCTNNNNNAGG	1 cut(s)	152
EcoRII	CCWGG	1 cut(s)	68
FaeI	CATG	2 cut(s)	31, 99
FaiI	YATR	3 cut(s)	29, 97, 255
FatI	CATG	2 cut(s)	27, 95
FokI	GGATG	1 cut(s)	278
Hin1II	CATG	2 cut(s)	31, 99
HinfI	GANTC	3 cut(s)	82, 298, 308
HphI	GGTGA	1 cut(s)	149
Hpy166II	GTNNAC	1 cut(s)	226
Hpy188III	TCNNGA	3 cut(s)	86, 295, 315
Hpy8I	GTNNAC	1 cut(s)	226
HpyAV	CCTTC	2 cut(s)	227, 232
HpyCH4V	TGCA	3 cut(s)	42, 53, 95
Hsp92II	CATG	2 cut(s)	31, 99
Kzo9I	GATC	1 cut(s)	24
LmnI	GCTCC	2 cut(s)	148, 262
LpnPI	CCDG	5 cut(s)	39, 55, 71, 82, 308
LweI	GCATC	1 cut(s)	204
MaeIII	GTNAC	2 cut(s)	3, 262
MalI	GATC	1 cut(s)	26
MboI	GATC	1 cut(s)	24
MboII	GAAGA	1 cut(s)	303
MluCI	AATT	4 cut(s)	47, 116, 164, 279
MnlI	CCTC	3 cut(s)	70, 133, 282
MseI	TTAA	2 cut(s)	21, 161
MspR9I	CCNGG	1 cut(s)	70
MvaI	CCWGG	1 cut(s)	70
NdeII	GATC	1 cut(s)	24
NlaIII	CATG	2 cut(s)	31, 99
NlaIV	GGNNCC	1 cut(s)	144
NmuCI	GTSAC	1 cut(s)	262
NspI	RCATGY	1 cut(s)	99
PfeI	GAWTC	3 cut(s)	82, 298, 308
PfoI	TCCNGGA	1 cut(s)	68
Psp6I	CCWGG	1 cut(s)	68
PspGI	CCWGG	1 cut(s)	68
PspN4I	GGNNCC	1 cut(s)	144
RsaI	GTAC	1 cut(s)	100
RsaNI	GTAC	1 cut(s)	99
SaqAI	TTAA	2 cut(s)	21, 161
Sau3AI	GATC	1 cut(s)	24
ScrFI	CCNGG	1 cut(s)	70
SetI	ASST	5 cut(s)	115, 159, 178, 243, 274
SfaNI	GCATC	1 cut(s)	204
Sse9I	AATT	4 cut(s)	47, 116, 164, 279
StyD4I	CCNGG	1 cut(s)	68
TasI	AATT	4 cut(s)	47, 116, 164, 279
TfiI	GAWTC	3 cut(s)	82, 298, 308
Tru1I	TTAA	2 cut(s)	21, 161
Tru9I	TTAA	2 cut(s)	21, 161
TseFI	GTSAC	1 cut(s)	262
Tsp45I	GTSAC	1 cut(s)	262
XagI	CCTNNNNNAGG	1 cut(s)	152
XapI	RAATTY	1 cut(s)	116
XceI	RCATGY	1 cut(s)	99

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.