Rroxscaffold_5G00352710

Belongs to the glutathione peroxidase family

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
Physical Location & Seq
Forward (+)
29927597 .. 29931362
3766 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_5G00352710.1

Sequence Viewer

Length: 510 bp
ATGTTACGTTTCAAACTCACCAACTGTATCTCTCTCCTCTTTCTGGGCTTTGCTTTCTTCTACTACTATTACACAGATCAATTTTCTTCTTCTCACACTATGGCTGCAGACAGTTCCAAATCTATTTATGAATTCACTGTCAAGGATATTCAGGGAAATGATGTAAAGCTAAGTGAGTACAGTGGCAAGGTTCTTCTGATTGTGAATGTTGCTTCAAAATGTGGTTTAACACAATCCAACTACAAGGAATTGAATATTTTGTATGAAAAGTACAAAAACAAAGGTTTTGAGATCTTGGCATTTCCTTGCAACCAGTTTGCAGGACAAGAGCCAGGAAACAATGAGGAGATTCAGGAAGTTGCATGCACGAGGTTGAAAGCTGAATTTCCAATATTTGACAAGATCGAGTTTTTGGTAAACAAAGAAGGGAAGGTTGTGGAGAGATATGCTCCTGTGACAGCACCTCTCAAAATTGAGAAAGACATCCAGAATCTATTGGAATCTTCTTGA

Protein Analysis

169

Amino Acids

19.33

Weight (kDa)

5.55

Isoelectric Point (pI)

44.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GSHPx PF00255 42 - 143 1.8e-36 Glutathione peroxidase
AhpC-TSA PF00578 42 - 105 2e-08 AhpC/TSA family
Redoxin PF08534 43 - 101 3.5e-06 Redoxin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 131, 383
AfaI GTAC 2 cut(s) 179, 272
AfiI CCNNNNNNNGG 1 cut(s) 43
AgsI TTSAA 4 cut(s) 13, 216, 253, 376
AjnI CCWGG 1 cut(s) 331
AluBI AGCT 2 cut(s) 169, 380
AluI AGCT 2 cut(s) 169, 380
ApeKI GCWGC 1 cut(s) 104
ApoI RAATTY 2 cut(s) 131, 383
AsuHPI GGTGA 1 cut(s) 10
BauI CACGAG 1 cut(s) 367
BbvI GCAGC 1 cut(s) 91
BciT130I CCWGG 1 cut(s) 333
BfmI CTRYAG 1 cut(s) 105
BglII AGATCT 1 cut(s) 291
BisI GCNGC 1 cut(s) 105
BlsI GCNGC 1 cut(s) 106
Bme1390I CCNGG 1 cut(s) 333
BmrFI CCNGG 1 cut(s) 333
BplI GAGNNNNNCTC 2 cut(s) 433, 465
Bsc4I CCNNNNNNNGG 1 cut(s) 43
Bse1I ACTGG 1 cut(s) 313
BseBI CCWGG 1 cut(s) 333
BseGI GGATG 1 cut(s) 483
BseLI CCNNNNNNNGG 1 cut(s) 43
BseNI ACTGG 1 cut(s) 313
BseRI GAGGAG 2 cut(s) 26, 359
BseXI GCAGC 1 cut(s) 91
BslI CCNNNNNNNGG 1 cut(s) 43
Bsp143I GATC 3 cut(s) 76, 291, 402
BspMAI CTGCAG 1 cut(s) 109
BsrI ACTGG 1 cut(s) 313
BssMI GATC 3 cut(s) 76, 291, 402
BssSI CACGAG 1 cut(s) 367
Bst2BI CACGAG 1 cut(s) 367
Bst2UI CCWGG 1 cut(s) 333
Bst4CI ACNGT 4 cut(s) 26, 113, 139, 182
BstC8I GCNNGC 1 cut(s) 364
BstDEI CTNAG 1 cut(s) 170
BstF5I GGATG 1 cut(s) 483
BstKTI GATC 3 cut(s) 79, 294, 405
BstMBI GATC 3 cut(s) 76, 291, 402
BstNI CCWGG 1 cut(s) 333
BstNSI RCATGY 1 cut(s) 366
BstSCI CCNGG 1 cut(s) 331
BstSFI CTRYAG 1 cut(s) 105
BstV1I GCAGC 1 cut(s) 91
BstX2I RGATCY 1 cut(s) 291
BstYI RGATCY 1 cut(s) 291
BtsCI GGATG 1 cut(s) 483
BtsIMutI CAGTG 2 cut(s) 135, 187
Cac8I GCNNGC 1 cut(s) 364
Csp6I GTAC 2 cut(s) 178, 271
CviAII CATG 1 cut(s) 363
CviJI RGCY 5 cut(s) 48, 104, 169, 331, 380
CviKI_1 RGCY 5 cut(s) 48, 104, 169, 331, 380
CviQI GTAC 2 cut(s) 178, 271
DdeI CTNAG 1 cut(s) 170
DpnI GATC 3 cut(s) 78, 293, 404
DpnII GATC 3 cut(s) 76, 291, 402
EcoRI GAATTC 1 cut(s) 131
EcoRII CCWGG 1 cut(s) 331
FaeI CATG 1 cut(s) 366
FaiI YATR 5 cut(s) 101, 129, 264, 364, 447
FatI CATG 1 cut(s) 362
Fnu4HI GCNGC 1 cut(s) 105
FokI GGATG 1 cut(s) 470
Fsp4HI GCNGC 1 cut(s) 105
GluI GCNGC 1 cut(s) 105
Hin1II CATG 1 cut(s) 366
HinfI GANTC 3 cut(s) 349, 490, 500
HphI GGTGA 1 cut(s) 10
Hpy166II GTNNAC 1 cut(s) 418
Hpy188I TCNGA 1 cut(s) 198
Hpy188III TCNNGA 3 cut(s) 353, 487, 507
Hpy8I GTNNAC 1 cut(s) 418
HpyAV CCTTC 2 cut(s) 419, 424
HpyCH4III ACNGT 4 cut(s) 26, 113, 139, 182
HpyCH4IV ACGT 1 cut(s) 7
HpyCH4V TGCA 5 cut(s) 107, 309, 320, 362, 366
HpyF3I CTNAG 1 cut(s) 170
HpySE526I ACGT 1 cut(s) 7
Hsp92II CATG 1 cut(s) 366
Kzo9I GATC 3 cut(s) 76, 291, 402
LmnI GCTCC 1 cut(s) 454
LpnPI CCDG 9 cut(s) 29, 137, 306, 318, 326, 338, 345, 465, 500
Lsp1109I GCAGC 1 cut(s) 91
MaeII ACGT 1 cut(s) 7
MaeIII GTNAC 2 cut(s) 3, 454
MalI GATC 3 cut(s) 78, 293, 404
MboI GATC 3 cut(s) 76, 291, 402
MboII GAAGA 5 cut(s) 49, 78, 81, 185, 495
MflI RGATCY 1 cut(s) 291
MluCI AATT 5 cut(s) 80, 131, 248, 383, 471
MmeI TCCRAC 1 cut(s) 261
MnlI CCTC 4 cut(s) 47, 337, 363, 474
MseI TTAA 1 cut(s) 227
MspR9I CCNGG 1 cut(s) 333
MvaI CCWGG 1 cut(s) 333
NdeII GATC 3 cut(s) 76, 291, 402
NlaIII CATG 1 cut(s) 366
NmuCI GTSAC 1 cut(s) 454
NspI RCATGY 1 cut(s) 366
PaeI GCATGC 1 cut(s) 366
PfeI GAWTC 3 cut(s) 349, 490, 500
PkrI GCNGC 1 cut(s) 106
Psp6I CCWGG 1 cut(s) 331
PspGI CCWGG 1 cut(s) 331
PstI CTGCAG 1 cut(s) 109
PsuI RGATCY 1 cut(s) 291
RsaI GTAC 2 cut(s) 179, 272
RsaNI GTAC 2 cut(s) 178, 271
SaqAI TTAA 1 cut(s) 227
SatI GCNGC 1 cut(s) 105
Sau3AI GATC 3 cut(s) 76, 291, 402
ScrFI CCNGG 1 cut(s) 333
SetI ASST 8 cut(s) 10, 171, 192, 286, 374, 382, 435, 466
SfcI CTRYAG 1 cut(s) 105
SphI GCATGC 1 cut(s) 366
Sse9I AATT 5 cut(s) 80, 131, 248, 383, 471
SspI AATATT 2 cut(s) 256, 393
StyD4I CCNGG 1 cut(s) 331
TaaI ACNGT 4 cut(s) 26, 113, 139, 182
TaiI ACGT 1 cut(s) 10
TaqI TCGA 1 cut(s) 405
TasI AATT 5 cut(s) 80, 131, 248, 383, 471
TatI WGTACW 2 cut(s) 177, 270
TfiI GAWTC 3 cut(s) 349, 490, 500
Tru1I TTAA 1 cut(s) 227
Tru9I TTAA 1 cut(s) 227
TscAI CASTG 2 cut(s) 142, 187
TseFI GTSAC 1 cut(s) 454
TseI GCWGC 1 cut(s) 104
Tsp45I GTSAC 1 cut(s) 454
TspDTI ATGAA 2 cut(s) 144, 279
TspRI CASTG 2 cut(s) 142, 187
XapI RAATTY 2 cut(s) 131, 383
XceI RCATGY 1 cut(s) 366
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.