Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0003502

Physical Location & Seq

Genomic Coordinates Reverse (-)

13515952 .. 13516545

Gene Structure 594 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG157900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

ATGAAAAGTTTTGAGATCCTGGCATTTCCTTGCAACCAGTTTGCAGGACAAGACGTTTCCTGGAATGAGGAGATTCAGGAAGTTGCATGTACGAAGTTGAAAGCTGAATTTCCAATCTTTGACAAGGATGAGGCTCCCCTTTACAAGGTCTTAAAATTGGAGAAAGGTGGTCTCTTTGGAAATGGCATCAAATGGAACTTTACCAAGTTTTTGGTAAACAAAGAAGGGAAGGTTGAGGAGAGATATGCTCCCGTGACAGCACCTCTCAAAATTGAGAAAGACATCCATAATCTATTGGAATCTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0016020 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00480 ko00590 ko04918 map00480 map00590 map04918

Pfam Domains

Protein Families

GSHPx

Protein Analysis

102

Amino Acids

11.65

Weight (kDa)

5.45

Isoelectric Point (pI)

47.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GSHPx	PF00255	3 - 44	1.2e-09	Glutathione peroxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0003502)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31570 AT2G43350 AT2G43350
fragaria_vesca	FvH4_6g25700
malus_domestica	MD04G1034400.v1.1 MD14G1027000.v1.1
prunus_persica	Prupe.1G186500_v2.0.a1 Prupe.1G186500_v2.0.a1
pyrus_communis	pycom14g02570
rosa_chinensis	RchiOBHm_Chr4g0400261 RchiOBHm_Chr4g0408201
rosa_laevigata	RLG00000008663 RLG00000015280
rosa_multiflora	Rmu_sc0001793.1_g000052 Rmu_sc0005466.1_g000001 Rmu_sc0007120.1_g000003
rosa_roxburghii	Rroxscaffold_1G00024180 Rroxscaffold_1G00051140 Rroxscaffold_4G00316840 Rroxscaffold_5G00352710 Rroxscaffold_5G00361080
rosa_rugosa	Rorug04G0084100 Rorug04G0184800
rosa_samantha	Rh1CG015500 Rh2AG152400 Rh2BG157900 Rh3BG160500 Rh4AG149100 Rh4BG145700 Rh4CG156100 Rh4DG142100 Rh5BG054800
rosa_wichuraiana	Rw1G001130 Rw3G028070 Rw4G012170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	10
AcsI	RAATTY	1 cut(s)	107
AfaI	GTAC	1 cut(s)	91
AfiI	CCNNNNNNNGG	1 cut(s)	145
AgsI	TTSAA	1 cut(s)	100
AjnI	CCWGG	2 cut(s)	18, 59
AluBI	AGCT	1 cut(s)	104
AluI	AGCT	1 cut(s)	104
Alw26I	GTCTC	1 cut(s)	176
AlwI	GGATC	1 cut(s)	10
ApoI	RAATTY	1 cut(s)	107
BciT130I	CCWGG	2 cut(s)	20, 61
BcoDI	GTCTC	1 cut(s)	176
Bme1390I	CCNGG	2 cut(s)	20, 61
BmiI	GGNNCC	1 cut(s)	135
BmrFI	CCNGG	2 cut(s)	20, 61
BmsI	GCATC	1 cut(s)	195
BplI	GAGNNNNNCTC	2 cut(s)	232, 264
BsaI	GGTCTC	1 cut(s)	176
Bsc4I	CCNNNNNNNGG	1 cut(s)	145
Bse1I	ACTGG	1 cut(s)	37
BseBI	CCWGG	2 cut(s)	20, 61
BseGI	GGATG	2 cut(s)	133, 282
BseLI	CCNNNNNNNGG	1 cut(s)	145
BseNI	ACTGG	1 cut(s)	37
BseRI	GAGGAG	2 cut(s)	83, 251
BslI	CCNNNNNNNGG	1 cut(s)	145
BsmAI	GTCTC	1 cut(s)	176
Bso31I	GGTCTC	1 cut(s)	176
Bsp143I	GATC	1 cut(s)	15
BspLI	GGNNCC	1 cut(s)	135
BspPI	GGATC	1 cut(s)	10
BspTNI	GGTCTC	1 cut(s)	176
BsrI	ACTGG	1 cut(s)	37
BssMI	GATC	1 cut(s)	15
Bst2UI	CCWGG	2 cut(s)	20, 61
BstENI	CCTNNNNNAGG	1 cut(s)	143
BstF5I	GGATG	2 cut(s)	133, 282
BstKTI	GATC	1 cut(s)	18
BstMAI	GTCTC	1 cut(s)	176
BstMBI	GATC	1 cut(s)	15
BstNI	CCWGG	2 cut(s)	20, 61
BstNSI	RCATGY	1 cut(s)	90
BstSCI	CCNGG	2 cut(s)	18, 59
BstX2I	RGATCY	1 cut(s)	15
BstXI	CCANNNNNNTGG	1 cut(s)	211
BstYI	RGATCY	1 cut(s)	15
BtsCI	GGATG	2 cut(s)	133, 282
Csp6I	GTAC	1 cut(s)	90
CviAII	CATG	1 cut(s)	87
CviJI	RGCY	2 cut(s)	104, 134
CviKI_1	RGCY	2 cut(s)	104, 134
CviQI	GTAC	1 cut(s)	90
DpnI	GATC	1 cut(s)	17
DpnII	GATC	1 cut(s)	15
Eco31I	GGTCTC	1 cut(s)	176
EcoNI	CCTNNNNNAGG	1 cut(s)	143
EcoRII	CCWGG	2 cut(s)	18, 59
FaeI	CATG	1 cut(s)	90
FaiI	YATR	3 cut(s)	88, 246, 288
FatI	CATG	1 cut(s)	86
FokI	GGATG	2 cut(s)	140, 269
Hin1II	CATG	1 cut(s)	90
HinfI	GANTC	2 cut(s)	73, 299
Hpy166II	GTNNAC	1 cut(s)	217
Hpy188III	TCNNGA	2 cut(s)	77, 306
Hpy8I	GTNNAC	1 cut(s)	217
HpyAV	CCTTC	2 cut(s)	218, 223
HpyCH4IV	ACGT	1 cut(s)	54
HpyCH4V	TGCA	3 cut(s)	33, 44, 86
HpySE526I	ACGT	1 cut(s)	54
Hsp92II	CATG	1 cut(s)	90
Kzo9I	GATC	1 cut(s)	15
LmnI	GCTCC	2 cut(s)	139, 253
LpnPI	CCDG	7 cut(s)	5, 30, 32, 46, 50, 62, 73
LweI	GCATC	1 cut(s)	195
MaeII	ACGT	1 cut(s)	54
MaeIII	GTNAC	1 cut(s)	253
MalI	GATC	1 cut(s)	17
MboI	GATC	1 cut(s)	15
MboII	GAAGA	1 cut(s)	294
MflI	RGATCY	1 cut(s)	15
MluCI	AATT	3 cut(s)	107, 155, 270
MnlI	CCTC	4 cut(s)	61, 124, 229, 273
MseI	TTAA	1 cut(s)	152
MspR9I	CCNGG	2 cut(s)	20, 61
MvaI	CCWGG	2 cut(s)	20, 61
NdeII	GATC	1 cut(s)	15
NlaIII	CATG	1 cut(s)	90
NlaIV	GGNNCC	1 cut(s)	135
NmuCI	GTSAC	1 cut(s)	253
NspI	RCATGY	1 cut(s)	90
PfeI	GAWTC	2 cut(s)	73, 299
PfoI	TCCNGGA	1 cut(s)	59
Psp6I	CCWGG	2 cut(s)	18, 59
PspGI	CCWGG	2 cut(s)	18, 59
PspN4I	GGNNCC	1 cut(s)	135
PsuI	RGATCY	1 cut(s)	15
RsaI	GTAC	1 cut(s)	91
RsaNI	GTAC	1 cut(s)	90
SaqAI	TTAA	1 cut(s)	152
Sau3AI	GATC	1 cut(s)	15
ScrFI	CCNGG	2 cut(s)	20, 61
SetI	ASST	6 cut(s)	57, 106, 150, 169, 234, 265
SfaNI	GCATC	1 cut(s)	195
Sse9I	AATT	3 cut(s)	107, 155, 270
StyD4I	CCNGG	2 cut(s)	18, 59
TaiI	ACGT	1 cut(s)	57
TasI	AATT	3 cut(s)	107, 155, 270
TfiI	GAWTC	2 cut(s)	73, 299
Tru1I	TTAA	1 cut(s)	152
Tru9I	TTAA	1 cut(s)	152
TseFI	GTSAC	1 cut(s)	253
Tsp45I	GTSAC	1 cut(s)	253
TspDTI	ATGAA	1 cut(s)	17
XagI	CCTNNNNNAGG	1 cut(s)	143
XapI	RAATTY	1 cut(s)	107
XceI	RCATGY	1 cut(s)	90

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.