Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005466.1

Orthogroup ID

OG0003502

Physical Location & Seq

Genomic Coordinates Reverse (-)

2921 .. 6259

Gene Structure 3339 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005466.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

atggctgcagacagttccaaatctatttatgaattcactgtcaaggatattcatggaaatgatgtaaagctaagtgagtacagtggcaaggttcttctgattgtgaatgttgcttcaaaatgtggtttaacacaatccaactacaaggaattgaatattttgtatgaaaagtacaaaaacaaaggttttgagatcttggcatttccttgcaaccagtttgcaggacaagagccaggaaacaatgaggagattcaggaagttgcatgcacgaggttgaaagctgaatttccaatatttgacaagatcgaggtgaatgggaagaatgaggctcccctttacaagttcttaaaattggagaaaggtggtctctttggaaatggcatcaaatggaactttaccaagtttttgcacctctcaaaattgagaaagacatccagaatctattggaatcttcttgagttgataggatggcagaaagggtttgctatagcaattgcagcaaataaaatgagtttgggagcatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0016020 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00480 ko00590 ko04918 map00480 map00590 map04918

Pfam Domains

Protein Families

GSHPx

Protein Analysis

174

Amino Acids

19.65

Weight (kDa)

9.12

Isoelectric Point (pI)

35.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003502)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31570 AT2G43350 AT2G43350
fragaria_vesca	FvH4_6g25700
malus_domestica	MD04G1034400.v1.1 MD14G1027000.v1.1
prunus_persica	Prupe.1G186500_v2.0.a1 Prupe.1G186500_v2.0.a1
pyrus_communis	pycom14g02570
rosa_chinensis	RchiOBHm_Chr4g0400261 RchiOBHm_Chr4g0408201
rosa_laevigata	RLG00000008663 RLG00000015280
rosa_multiflora	Rmu_sc0001793.1_g000052 Rmu_sc0005466.1_g000001 Rmu_sc0007120.1_g000003
rosa_roxburghii	Rroxscaffold_1G00024180 Rroxscaffold_1G00051140 Rroxscaffold_4G00316840 Rroxscaffold_5G00352710 Rroxscaffold_5G00361080
rosa_rugosa	Rorug04G0084100 Rorug04G0184800
rosa_samantha	Rh1CG015500 Rh2AG152400 Rh2BG157900 Rh3BG160500 Rh4AG149100 Rh4BG145700 Rh4CG156100 Rh4DG142100 Rh5BG054800
rosa_wichuraiana	Rw1G001130 Rw3G028070 Rw4G012170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	2 cut(s)	32, 284
AfaI	GTAC	2 cut(s)	80, 173
AgsI	TTSAA	3 cut(s)	117, 154, 277
AjnI	CCWGG	1 cut(s)	232
AluBI	AGCT	2 cut(s)	70, 281
AluI	AGCT	2 cut(s)	70, 281
Alw26I	GTCTC	1 cut(s)	371
ApeKI	GCWGC	2 cut(s)	5, 497
ApoI	RAATTY	2 cut(s)	32, 284
AsuHPI	GGTGA	1 cut(s)	322
BauI	CACGAG	1 cut(s)	268
BbvI	GCAGC	1 cut(s)	509
BccI	CCATC	1 cut(s)	462
BciT130I	CCWGG	1 cut(s)	234
BcoDI	GTCTC	1 cut(s)	371
BfmI	CTRYAG	2 cut(s)	6, 486
BglII	AGATCT	1 cut(s)	192
BisI	GCNGC	2 cut(s)	6, 498
BlsI	GCNGC	2 cut(s)	7, 499
Bme1390I	CCNGG	1 cut(s)	234
BmiI	GGNNCC	1 cut(s)	330
BmrFI	CCNGG	1 cut(s)	234
BmsI	GCATC	1 cut(s)	390
BpuEI	CTTGAG	1 cut(s)	476
BsaI	GGTCTC	1 cut(s)	371
Bse1I	ACTGG	1 cut(s)	214
BseBI	CCWGG	1 cut(s)	234
BseGI	GGATG	2 cut(s)	431, 473
BseNI	ACTGG	1 cut(s)	214
BseRI	GAGGAG	1 cut(s)	260
BseXI	GCAGC	1 cut(s)	509
BsmAI	GTCTC	1 cut(s)	371
Bso31I	GGTCTC	1 cut(s)	371
Bsp143I	GATC	2 cut(s)	192, 303
BspLI	GGNNCC	1 cut(s)	330
BspMAI	CTGCAG	1 cut(s)	10
BspTNI	GGTCTC	1 cut(s)	371
BsrI	ACTGG	1 cut(s)	214
BssMI	GATC	2 cut(s)	192, 303
BssSI	CACGAG	1 cut(s)	268
Bst2BI	CACGAG	1 cut(s)	268
Bst2UI	CCWGG	1 cut(s)	234
Bst4CI	ACNGT	3 cut(s)	14, 40, 83
BstC8I	GCNNGC	1 cut(s)	265
BstDEI	CTNAG	1 cut(s)	71
BstF5I	GGATG	2 cut(s)	431, 473
BstKTI	GATC	2 cut(s)	195, 306
BstMAI	GTCTC	1 cut(s)	371
BstMBI	GATC	2 cut(s)	192, 303
BstMWI	GCNNNNNNNGC	1 cut(s)	497
BstNI	CCWGG	1 cut(s)	234
BstNSI	RCATGY	1 cut(s)	267
BstSCI	CCNGG	1 cut(s)	232
BstSFI	CTRYAG	2 cut(s)	6, 486
BstV1I	GCAGC	1 cut(s)	509
BstX2I	RGATCY	1 cut(s)	192
BstYI	RGATCY	1 cut(s)	192
BtsCI	GGATG	2 cut(s)	431, 473
BtsIMutI	CAGTG	2 cut(s)	36, 88
Cac8I	GCNNGC	1 cut(s)	265
Csp6I	GTAC	2 cut(s)	79, 172
CviAII	CATG	3 cut(s)	53, 264, 522
CviJI	RGCY	5 cut(s)	5, 70, 232, 281, 329
CviKI_1	RGCY	5 cut(s)	5, 70, 232, 281, 329
CviQI	GTAC	2 cut(s)	79, 172
DdeI	CTNAG	1 cut(s)	71
DpnI	GATC	2 cut(s)	194, 305
DpnII	GATC	2 cut(s)	192, 303
Eco31I	GGTCTC	1 cut(s)	371
EcoRI	GAATTC	1 cut(s)	32
EcoRII	CCWGG	1 cut(s)	232
FaeI	CATG	3 cut(s)	56, 267, 525
FaiI	YATR	6 cut(s)	30, 54, 165, 265, 488, 523
FatI	CATG	3 cut(s)	52, 263, 521
Fnu4HI	GCNGC	2 cut(s)	6, 498
FokI	GGATG	2 cut(s)	418, 480
Fsp4HI	GCNGC	2 cut(s)	6, 498
GluI	GCNGC	2 cut(s)	6, 498
Hin1II	CATG	3 cut(s)	56, 267, 525
HinfI	GANTC	3 cut(s)	250, 438, 448
HphI	GGTGA	1 cut(s)	322
Hpy188I	TCNGA	1 cut(s)	99
Hpy188III	TCNNGA	3 cut(s)	254, 435, 455
HpyCH4III	ACNGT	3 cut(s)	14, 40, 83
HpyCH4V	TGCA	7 cut(s)	8, 210, 221, 263, 267, 409, 497
HpyF10VI	GCNNNNNNNGC	1 cut(s)	497
HpyF3I	CTNAG	1 cut(s)	71
Hsp92II	CATG	3 cut(s)	56, 267, 525
Kzo9I	GATC	2 cut(s)	192, 303
LmnI	GCTCC	2 cut(s)	334, 518
LpnPI	CCDG	6 cut(s)	207, 219, 227, 239, 246, 448
Lsp1109I	GCAGC	1 cut(s)	509
LweI	GCATC	1 cut(s)	390
MalI	GATC	2 cut(s)	194, 305
MboI	GATC	2 cut(s)	192, 303
MboII	GAAGA	3 cut(s)	86, 331, 443
MfeI	CAATTG	1 cut(s)	492
MflI	RGATCY	1 cut(s)	192
MluCI	AATT	6 cut(s)	32, 149, 284, 350, 419, 492
MmeI	TCCRAC	1 cut(s)	162
MnlI	CCTC	5 cut(s)	238, 264, 301, 319, 422
MseI	TTAA	2 cut(s)	128, 347
MslI	CAYNNNNRTG	1 cut(s)	57
MspR9I	CCNGG	1 cut(s)	234
MunI	CAATTG	1 cut(s)	492
MvaI	CCWGG	1 cut(s)	234
MwoI	GCNNNNNNNGC	1 cut(s)	497
NdeII	GATC	2 cut(s)	192, 303
NlaIII	CATG	3 cut(s)	56, 267, 525
NlaIV	GGNNCC	1 cut(s)	330
NspI	RCATGY	1 cut(s)	267
PaeI	GCATGC	1 cut(s)	267
PfeI	GAWTC	3 cut(s)	250, 438, 448
PkrI	GCNGC	2 cut(s)	7, 499
Psp6I	CCWGG	1 cut(s)	232
PspGI	CCWGG	1 cut(s)	232
PspN4I	GGNNCC	1 cut(s)	330
PstI	CTGCAG	1 cut(s)	10
PsuI	RGATCY	1 cut(s)	192
RsaI	GTAC	2 cut(s)	80, 173
RsaNI	GTAC	2 cut(s)	79, 172
RseI	CAYNNNNRTG	1 cut(s)	57
SaqAI	TTAA	2 cut(s)	128, 347
SatI	GCNGC	2 cut(s)	6, 498
Sau3AI	GATC	2 cut(s)	192, 303
ScrFI	CCNGG	1 cut(s)	234
SetI	ASST	8 cut(s)	72, 93, 187, 275, 283, 312, 364, 414
SfaNI	GCATC	1 cut(s)	390
SfcI	CTRYAG	2 cut(s)	6, 486
SmiMI	CAYNNNNRTG	1 cut(s)	57
SmlI	CTYRAG	1 cut(s)	455
SmoI	CTYRAG	1 cut(s)	455
SphI	GCATGC	1 cut(s)	267
Sse9I	AATT	6 cut(s)	32, 149, 284, 350, 419, 492
SspI	AATATT	2 cut(s)	157, 294
StyD4I	CCNGG	1 cut(s)	232
TaaI	ACNGT	3 cut(s)	14, 40, 83
TaqI	TCGA	1 cut(s)	306
TasI	AATT	6 cut(s)	32, 149, 284, 350, 419, 492
TatI	WGTACW	2 cut(s)	78, 171
TfiI	GAWTC	3 cut(s)	250, 438, 448
Tru1I	TTAA	2 cut(s)	128, 347
Tru9I	TTAA	2 cut(s)	128, 347
TscAI	CASTG	2 cut(s)	43, 88
TseI	GCWGC	2 cut(s)	5, 497
TspDTI	ATGAA	3 cut(s)	41, 45, 180
TspRI	CASTG	2 cut(s)	43, 88
XapI	RAATTY	2 cut(s)	32, 284
XceI	RCATGY	1 cut(s)	267

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.