RLG00000008663

Belongs to the glutathione peroxidase family

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
Physical Location & Seq
Reverse (-)
34532617 .. 34534986
2370 bp
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UTR
Exon/CDS
Intron
RLM00000008663

Sequence Viewer

Length: 504 bp
ATGGCTGCGGACAGTTCCAAATCTATTTATGAATTCACTGTCAAGGATATTCATGGAAATGATGTAAAGCTAAGTGAGTACAGTGGCAAGGTTCTTCTAATTGTGAATGTTGCTTCAAAATGTGGTTTAACACAATCCAACTACAAGGAATTGAATATTTTGTATGAAAAGTACAAAAACAAAGGTTTTGAGATCTTGGCATTTCCTTGCAACCAGTTTGCAGGACAAGAGCCAGGAAACAATGAGGAGATTCAGGAAGTTGCATGCACGAGGTTGAAAGCTGAATTTCCAATATTTGACAAGATCGAGGTGAATGGGAAGAATGAGGCTCCCCTTTACAAGTTCTTAAAATTGGAGAAAGGTGGTCTCTTTGGAAATGGCATCAAATGGAACTTTACCAAGTTTTTGGTAAACAAAGAAGGGAAGGTTGTGGAGAGATATGCTCCTGTGACAGCACCTCTCAAAATAGAGAAAGACATCCAGAATCTATTGGAATCTTCTTGA

Protein Analysis

168

Amino Acids

18.82

Weight (kDa)

7.61

Isoelectric Point (pI)

37.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GSHPx PF00255 9 - 117 1.4e-43 Glutathione peroxidase
AhpC-TSA PF00578 9 - 71 3e-08 AhpC/TSA family
Redoxin PF08534 10 - 68 2e-06 Redoxin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 8
AcsI RAATTY 2 cut(s) 32, 284
AfaI GTAC 2 cut(s) 80, 173
AgsI TTSAA 3 cut(s) 117, 154, 277
AjnI CCWGG 1 cut(s) 232
AluBI AGCT 2 cut(s) 70, 281
AluI AGCT 2 cut(s) 70, 281
Alw26I GTCTC 1 cut(s) 371
ApeKI GCWGC 1 cut(s) 5
ApoI RAATTY 2 cut(s) 32, 284
AsuHPI GGTGA 1 cut(s) 322
BauI CACGAG 1 cut(s) 268
BciT130I CCWGG 1 cut(s) 234
BcoDI GTCTC 1 cut(s) 371
BglII AGATCT 1 cut(s) 192
BisI GCNGC 1 cut(s) 6
BlsI GCNGC 1 cut(s) 7
Bme1390I CCNGG 1 cut(s) 234
BmiI GGNNCC 1 cut(s) 330
BmrFI CCNGG 1 cut(s) 234
BmsI GCATC 1 cut(s) 390
BplI GAGNNNNNCTC 2 cut(s) 427, 459
BsaI GGTCTC 1 cut(s) 371
Bse1I ACTGG 1 cut(s) 214
BseBI CCWGG 1 cut(s) 234
BseGI GGATG 1 cut(s) 477
BseNI ACTGG 1 cut(s) 214
BseRI GAGGAG 1 cut(s) 260
BsmAI GTCTC 1 cut(s) 371
Bso31I GGTCTC 1 cut(s) 371
Bsp143I GATC 2 cut(s) 192, 303
BspACI CCGC 1 cut(s) 8
BspLI GGNNCC 1 cut(s) 330
BspTNI GGTCTC 1 cut(s) 371
BsrI ACTGG 1 cut(s) 214
BssMI GATC 2 cut(s) 192, 303
BssSI CACGAG 1 cut(s) 268
Bst2BI CACGAG 1 cut(s) 268
Bst2UI CCWGG 1 cut(s) 234
Bst4CI ACNGT 3 cut(s) 14, 40, 83
BstC8I GCNNGC 1 cut(s) 265
BstDEI CTNAG 1 cut(s) 71
BstF5I GGATG 1 cut(s) 477
BstKTI GATC 2 cut(s) 195, 306
BstMAI GTCTC 1 cut(s) 371
BstMBI GATC 2 cut(s) 192, 303
BstNI CCWGG 1 cut(s) 234
BstNSI RCATGY 1 cut(s) 267
BstSCI CCNGG 1 cut(s) 232
BstX2I RGATCY 1 cut(s) 192
BstXI CCANNNNNNTGG 1 cut(s) 406
BstYI RGATCY 1 cut(s) 192
BtsCI GGATG 1 cut(s) 477
BtsIMutI CAGTG 2 cut(s) 36, 88
Cac8I GCNNGC 1 cut(s) 265
Csp6I GTAC 2 cut(s) 79, 172
CviAII CATG 2 cut(s) 53, 264
CviJI RGCY 5 cut(s) 5, 70, 232, 281, 329
CviKI_1 RGCY 5 cut(s) 5, 70, 232, 281, 329
CviQI GTAC 2 cut(s) 79, 172
DdeI CTNAG 1 cut(s) 71
DpnI GATC 2 cut(s) 194, 305
DpnII GATC 2 cut(s) 192, 303
Eco31I GGTCTC 1 cut(s) 371
EcoRI GAATTC 1 cut(s) 32
EcoRII CCWGG 1 cut(s) 232
FaeI CATG 2 cut(s) 56, 267
FaiI YATR 5 cut(s) 30, 54, 165, 265, 441
FatI CATG 2 cut(s) 52, 263
Fnu4HI GCNGC 1 cut(s) 6
FokI GGATG 1 cut(s) 464
Fsp4HI GCNGC 1 cut(s) 6
GluI GCNGC 1 cut(s) 6
Hin1II CATG 2 cut(s) 56, 267
HinfI GANTC 3 cut(s) 250, 484, 494
HphI GGTGA 1 cut(s) 322
Hpy166II GTNNAC 1 cut(s) 412
Hpy188III TCNNGA 3 cut(s) 254, 481, 501
Hpy8I GTNNAC 1 cut(s) 412
HpyAV CCTTC 2 cut(s) 413, 418
HpyCH4III ACNGT 3 cut(s) 14, 40, 83
HpyCH4V TGCA 4 cut(s) 210, 221, 263, 267
HpyF3I CTNAG 1 cut(s) 71
Hsp92II CATG 2 cut(s) 56, 267
Kzo9I GATC 2 cut(s) 192, 303
LmnI GCTCC 2 cut(s) 334, 448
LpnPI CCDG 7 cut(s) 207, 219, 227, 239, 246, 459, 494
LweI GCATC 1 cut(s) 390
MaeIII GTNAC 1 cut(s) 448
MalI GATC 2 cut(s) 194, 305
MboI GATC 2 cut(s) 192, 303
MboII GAAGA 3 cut(s) 86, 331, 489
MflI RGATCY 1 cut(s) 192
MluCI AATT 5 cut(s) 32, 99, 149, 284, 350
MmeI TCCRAC 1 cut(s) 162
MnlI CCTC 5 cut(s) 238, 264, 301, 319, 468
MseI TTAA 2 cut(s) 128, 347
MslI CAYNNNNRTG 1 cut(s) 57
MspR9I CCNGG 1 cut(s) 234
MvaI CCWGG 1 cut(s) 234
NdeII GATC 2 cut(s) 192, 303
NlaIII CATG 2 cut(s) 56, 267
NlaIV GGNNCC 1 cut(s) 330
NmuCI GTSAC 1 cut(s) 448
NspI RCATGY 1 cut(s) 267
PaeI GCATGC 1 cut(s) 267
PfeI GAWTC 3 cut(s) 250, 484, 494
PkrI GCNGC 1 cut(s) 7
Psp6I CCWGG 1 cut(s) 232
PspGI CCWGG 1 cut(s) 232
PspN4I GGNNCC 1 cut(s) 330
PsuI RGATCY 1 cut(s) 192
RsaI GTAC 2 cut(s) 80, 173
RsaNI GTAC 2 cut(s) 79, 172
RseI CAYNNNNRTG 1 cut(s) 57
SaqAI TTAA 2 cut(s) 128, 347
SatI GCNGC 1 cut(s) 6
Sau3AI GATC 2 cut(s) 192, 303
ScrFI CCNGG 1 cut(s) 234
SetI ASST 9 cut(s) 72, 93, 187, 275, 283, 312, 364, 429, 460
SfaNI GCATC 1 cut(s) 390
SmiMI CAYNNNNRTG 1 cut(s) 57
SphI GCATGC 1 cut(s) 267
Sse9I AATT 5 cut(s) 32, 99, 149, 284, 350
SsiI CCGC 1 cut(s) 8
SspI AATATT 2 cut(s) 157, 294
StyD4I CCNGG 1 cut(s) 232
TaaI ACNGT 3 cut(s) 14, 40, 83
TaqI TCGA 1 cut(s) 306
TasI AATT 5 cut(s) 32, 99, 149, 284, 350
TatI WGTACW 2 cut(s) 78, 171
TfiI GAWTC 3 cut(s) 250, 484, 494
Tru1I TTAA 2 cut(s) 128, 347
Tru9I TTAA 2 cut(s) 128, 347
TscAI CASTG 2 cut(s) 43, 88
TseFI GTSAC 1 cut(s) 448
TseI GCWGC 1 cut(s) 5
Tsp45I GTSAC 1 cut(s) 448
TspDTI ATGAA 3 cut(s) 41, 45, 180
TspRI CASTG 2 cut(s) 43, 88
XapI RAATTY 2 cut(s) 32, 284
XceI RCATGY 1 cut(s) 267
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.