pycom14g02570

Belongs to the glutathione peroxidase family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
Physical Location & Seq
Forward (+)
1991009 .. 1991359
351 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom14g02570.1

Sequence Viewer

Length: 351 bp
ATGTGTTCGTTGAAATTCACCAACTGGGTCCTTCTCTTCTTTCTGGGTTTTGCTTTCTTCCGCTACTTTTACACTTCCCAATTCTCTTCTCCTCGAATTATGGCTGAAGAAAGTTCCAAATCTGTATACGAATTCACTGTCAAGGATATTCATGGTAACGACGTAAATCTGAGTGAATACAGTGGGAAGGTGGTTGTTATAGCGAATGTTGCTTCAAAATATGTAACACAATCAAACTTCAAGGAATTAAGTGTTTCGTATGGAAAGTACAAAAACAAAGATTTTGTGGTTTTGGCGTTTCCTTGCAACCAGTTTGCAGGACAAAAGCCAGGAAACAATGAGGAGATTTAA

Protein Analysis

117

Amino Acids

13.28

Weight (kDa)

8.52

Isoelectric Point (pI)

21.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GSHPx PF00255 42 - 116 8.1e-23 Glutathione peroxidase
AhpC-TSA PF00578 42 - 103 6.1e-06 AhpC/TSA family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 126
AciI CCGC 1 cut(s) 61
AcsI RAATTY 2 cut(s) 14, 131
AcuI CTGAAG 1 cut(s) 126
AfaI GTAC 1 cut(s) 269
AgsI TTSAA 3 cut(s) 13, 216, 241
AjnI CCWGG 1 cut(s) 328
ApoI RAATTY 2 cut(s) 14, 131
ArsI GACNNNNNNTTYG 2 cut(s) 123, 155
AspS9I GGNCC 1 cut(s) 28
AsuHPI GGTGA 1 cut(s) 10
AvaII GGWCC 1 cut(s) 28
BciT130I CCWGG 1 cut(s) 330
Bme1390I CCNGG 1 cut(s) 330
Bme18I GGWCC 1 cut(s) 28
BmgT120I GGNCC 1 cut(s) 28
BmiI GGNNCC 1 cut(s) 29
BmrFI CCNGG 1 cut(s) 330
BmrI ACTGGG 1 cut(s) 34
BmuI ACTGGG 1 cut(s) 34
Bse1I ACTGG 2 cut(s) 29, 310
BseBI CCWGG 1 cut(s) 330
BseMII CTCAG 1 cut(s) 161
BseNI ACTGG 2 cut(s) 29, 310
BseRI GAGGAG 1 cut(s) 81
BspACI CCGC 1 cut(s) 61
BspCNI CTCAG 1 cut(s) 162
BspLI GGNNCC 1 cut(s) 29
BsrI ACTGG 2 cut(s) 29, 310
BssNAI GTATAC 1 cut(s) 127
Bst1107I GTATAC 1 cut(s) 127
Bst2UI CCWGG 1 cut(s) 330
Bst4CI ACNGT 2 cut(s) 139, 182
Bst6I CTCTTC 2 cut(s) 41, 91
BstDEI CTNAG 1 cut(s) 170
BstMWI GCNNNNNNNGC 1 cut(s) 209
BstNI CCWGG 1 cut(s) 330
BstSCI CCNGG 1 cut(s) 328
BstZ17I GTATAC 1 cut(s) 127
BtsIMutI CAGTG 2 cut(s) 135, 187
Cfr13I GGNCC 1 cut(s) 28
Csp6I GTAC 1 cut(s) 268
CviAII CATG 1 cut(s) 152
CviJI RGCY 2 cut(s) 104, 328
CviKI_1 RGCY 2 cut(s) 104, 328
CviQI GTAC 1 cut(s) 268
DdeI CTNAG 1 cut(s) 170
Eam1104I CTCTTC 2 cut(s) 41, 91
EarI CTCTTC 2 cut(s) 41, 91
Eco47I GGWCC 1 cut(s) 28
Eco57I CTGAAG 1 cut(s) 126
EcoO109I RGGNCCY 1 cut(s) 28
EcoRI GAATTC 1 cut(s) 131
EcoRII CCWGG 1 cut(s) 328
FaeI CATG 1 cut(s) 155
FaiI YATR 6 cut(s) 101, 127, 153, 200, 222, 261
FatI CATG 1 cut(s) 151
FblI GTMKAC 1 cut(s) 126
Hin1II CATG 1 cut(s) 155
HphI GGTGA 1 cut(s) 10
Hpy166II GTNNAC 1 cut(s) 127
Hpy188I TCNGA 1 cut(s) 171
Hpy8I GTNNAC 1 cut(s) 127
Hpy99I CGWCG 1 cut(s) 164
HpyAV CCTTC 2 cut(s) 41, 181
HpyCH4III ACNGT 2 cut(s) 139, 182
HpyCH4IV ACGT 1 cut(s) 162
HpyCH4V TGCA 2 cut(s) 306, 317
HpyF10VI GCNNNNNNNGC 1 cut(s) 209
HpyF3I CTNAG 1 cut(s) 170
HpySE526I ACGT 1 cut(s) 162
Hsp92II CATG 1 cut(s) 155
LpnPI CCDG 6 cut(s) 10, 29, 303, 315, 323, 342
MaeII ACGT 1 cut(s) 162
MaeIII GTNAC 2 cut(s) 155, 223
MboII GAAGA 4 cut(s) 28, 49, 78, 119
MluCI AATT 5 cut(s) 14, 80, 96, 131, 245
MnlI CCTC 2 cut(s) 102, 334
MseI TTAA 2 cut(s) 248, 349
MspR9I CCNGG 1 cut(s) 330
MvaI CCWGG 1 cut(s) 330
MwoI GCNNNNNNNGC 1 cut(s) 209
NlaIII CATG 1 cut(s) 155
NlaIV GGNNCC 1 cut(s) 29
PpuMI RGGWCCY 1 cut(s) 28
Psp5II RGGWCCY 1 cut(s) 28
Psp6I CCWGG 1 cut(s) 328
PspGI CCWGG 1 cut(s) 328
PspN4I GGNNCC 1 cut(s) 29
PspPI GGNCC 1 cut(s) 28
PspPPI RGGWCCY 1 cut(s) 28
RsaI GTAC 1 cut(s) 269
RsaNI GTAC 1 cut(s) 268
SaqAI TTAA 2 cut(s) 248, 349
Sau96I GGNCC 1 cut(s) 28
ScrFI CCNGG 1 cut(s) 330
SetI ASST 2 cut(s) 165, 192
SinI GGWCC 1 cut(s) 28
Sse9I AATT 5 cut(s) 14, 80, 96, 131, 245
SsiI CCGC 1 cut(s) 61
StyD4I CCNGG 1 cut(s) 328
TaaI ACNGT 2 cut(s) 139, 182
TaiI ACGT 1 cut(s) 165
TaqI TCGA 1 cut(s) 94
TasI AATT 5 cut(s) 14, 80, 96, 131, 245
TatI WGTACW 1 cut(s) 267
Tru1I TTAA 2 cut(s) 248, 349
Tru9I TTAA 2 cut(s) 248, 349
TscAI CASTG 2 cut(s) 142, 187
TspDTI ATGAA 1 cut(s) 140
TspRI CASTG 2 cut(s) 142, 187
VpaK11BI GGWCC 1 cut(s) 28
XapI RAATTY 2 cut(s) 14, 131
XmiI GTMKAC 1 cut(s) 126
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.