Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0003502

Physical Location & Seq

Genomic Coordinates Forward (+)

30051461 .. 30059551

Gene Structure 8091 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00024180.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGCCGGAATGGAGGCTAAAGATTGCATCAAGATCAAGGATATGGCATTCAAGGCCTCGGGAGCCTACAAAAACTGCAAGCCATGTACGAGGTTGTGTGGTTACACCGGAACGGGAACCTGTTCGTACTCGATATGTCGGCAAAGTTTTGAGATCCCGGCATTTCCTTTCAACCGTTTGTAGGACAAGACGTTTCTGGAATGAGGAGATTCAGGAAGTTGCATGTACGAGGTTGAAAGCTGAATTTCCAATCTTTGACAAGAAAGAATCTGCAAAACTAACAAAGCTCCATGAACTTGTTGGTCTTGCAAGTTATGCTTCACCCGATCTAAAATGGAGGCAGCGGAGGAGGTTGGAGGTCTGCGGGGAGGGCAAGGTCGTAGAGCTTGACGAAGGCGATGAGGAGGGAGTCGTGAGATTCGGGCTAGGCAACATCCTAGACGCCGTCGGCGGTGTCAAGGGCGATGGCGGTGAAGTCGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0016020 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00480 ko00590 ko04918 map00480 map00590 map04918

Pfam Domains

Protein Families

GSHPx

Protein Analysis

160

Amino Acids

18.24

Weight (kDa)

9.6

Isoelectric Point (pI)

56.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003502)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31570 AT2G43350 AT2G43350
fragaria_vesca	FvH4_6g25700
malus_domestica	MD04G1034400.v1.1 MD14G1027000.v1.1
prunus_persica	Prupe.1G186500_v2.0.a1 Prupe.1G186500_v2.0.a1
pyrus_communis	pycom14g02570
rosa_chinensis	RchiOBHm_Chr4g0400261 RchiOBHm_Chr4g0408201
rosa_laevigata	RLG00000008663 RLG00000015280
rosa_multiflora	Rmu_sc0001793.1_g000052 Rmu_sc0005466.1_g000001 Rmu_sc0007120.1_g000003
rosa_roxburghii	Rroxscaffold_1G00024180 Rroxscaffold_1G00051140 Rroxscaffold_4G00316840 Rroxscaffold_5G00352710 Rroxscaffold_5G00361080
rosa_rugosa	Rorug04G0084100 Rorug04G0184800
rosa_samantha	Rh1CG015500 Rh2AG152400 Rh2BG157900 Rh3BG160500 Rh4AG149100 Rh4BG145700 Rh4CG156100 Rh4DG142100 Rh5BG054800
rosa_wichuraiana	Rw1G001130 Rw3G028070 Rw4G012170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	343, 363, 450, 468
AclWI	GGATC	1 cut(s)	147
AcsI	RAATTY	1 cut(s)	242
AcyI	GRCGYC	1 cut(s)	441
AfaI	GTAC	3 cut(s)	87, 127, 226
AfiI	CCNNNNNNNGG	1 cut(s)	180
AgsI	TTSAA	3 cut(s)	51, 171, 235
AluBI	AGCT	3 cut(s)	239, 286, 385
AluI	AGCT	3 cut(s)	239, 286, 385
AlwI	GGATC	1 cut(s)	147
Ama87I	CYCGRG	1 cut(s)	57
AoxI	GGCC	1 cut(s)	53
ApeKI	GCWGC	1 cut(s)	340
ApoI	RAATTY	1 cut(s)	242
Asp700I	GAANNNNTTC	1 cut(s)	120
AsuC2I	CCSGG	1 cut(s)	157
AsuHPI	GGTGA	2 cut(s)	312, 482
AvaI	CYCGRG	1 cut(s)	57
BbvI	GCAGC	1 cut(s)	352
BccI	CCATC	1 cut(s)	458
BceAI	ACGGC	1 cut(s)	428
BcnI	CCSGG	1 cut(s)	157
BfaI	CTAG	2 cut(s)	425, 437
BisI	GCNGC	1 cut(s)	341
BlsI	GCNGC	1 cut(s)	342
Bme1390I	CCNGG	1 cut(s)	157
BmeT110I	CYCGRG	1 cut(s)	57
BmiI	GGNNCC	2 cut(s)	63, 117
BmrFI	CCNGG	1 cut(s)	157
BmsI	GCATC	1 cut(s)	35
BpuMI	CCSGG	1 cut(s)	157
BsaHI	GRCGYC	1 cut(s)	441
BsaJI	CCNNGG	1 cut(s)	56
BsaWI	WCCGGW	1 cut(s)	106
Bsc4I	CCNNNNNNNGG	1 cut(s)	180
BseDI	CCNNGG	1 cut(s)	56
BseGI	GGATG	1 cut(s)	432
BseLI	CCNNNNNNNGG	1 cut(s)	180
BseRI	GAGGAG	3 cut(s)	218, 361, 416
BseXI	GCAGC	1 cut(s)	352
BshFI	GGCC	1 cut(s)	55
BsiHKCI	CYCGRG	1 cut(s)	57
BsiSI	CCGG	3 cut(s)	5, 107, 157
BslI	CCNNNNNNNGG	1 cut(s)	180
BsmI	GAATGC	1 cut(s)	46
BsnI	GGCC	1 cut(s)	55
BsoBI	CYCGRG	1 cut(s)	57
Bsp143I	GATC	3 cut(s)	32, 152, 325
BspACI	CCGC	4 cut(s)	343, 363, 450, 468
BspANI	GGCC	1 cut(s)	55
BspLI	GGNNCC	2 cut(s)	63, 117
BspPI	GGATC	1 cut(s)	147
BssECI	CCNNGG	1 cut(s)	56
BssMI	GATC	3 cut(s)	32, 152, 325
BssNI	GRCGYC	1 cut(s)	441
Bst4CI	ACNGT	1 cut(s)	175
BstACI	GRCGYC	1 cut(s)	441
BstAPI	GCANNNNNTGC	1 cut(s)	314
BstC8I	GCNNGC	1 cut(s)	79
BstF5I	GGATG	1 cut(s)	432
BstKTI	GATC	3 cut(s)	35, 155, 328
BstMBI	GATC	3 cut(s)	32, 152, 325
BstMWI	GCNNNNNNNGC	4 cut(s)	52, 61, 314, 369
BstNSI	RCATGY	1 cut(s)	225
BstSCI	CCNGG	1 cut(s)	155
BstV1I	GCAGC	1 cut(s)	352
BstX2I	RGATCY	1 cut(s)	152
BstYI	RGATCY	1 cut(s)	152
BsuRI	GGCC	1 cut(s)	55
BtgZI	GCGATG	2 cut(s)	411, 477
BtsCI	GGATG	1 cut(s)	432
Cac8I	GCNNGC	1 cut(s)	79
CseI	GACGC	1 cut(s)	449
Csp6I	GTAC	3 cut(s)	86, 126, 225
CviAII	CATG	3 cut(s)	83, 222, 290
CviJI	RGCY	8 cut(s)	16, 55, 64, 81, 239, 286, 385, 424
CviKI_1	RGCY	8 cut(s)	16, 55, 64, 81, 239, 286, 385, 424
CviQI	GTAC	3 cut(s)	86, 126, 225
DpnI	GATC	3 cut(s)	34, 154, 327
DpnII	GATC	3 cut(s)	32, 152, 325
Eco147I	AGGCCT	1 cut(s)	55
Eco88I	CYCGRG	1 cut(s)	57
FaeI	CATG	3 cut(s)	86, 225, 293
FaiI	YATR	6 cut(s)	43, 84, 135, 223, 291, 315
FalI	AAGNNNNNCTT	2 cut(s)	301, 333
FatI	CATG	3 cut(s)	82, 221, 289
FauI	CCCGC	1 cut(s)	356
Fnu4HI	GCNGC	1 cut(s)	341
FokI	GGATG	1 cut(s)	419
Fsp4HI	GCNGC	1 cut(s)	341
FspBI	CTAG	2 cut(s)	425, 437
GluI	GCNGC	1 cut(s)	341
HaeIII	GGCC	1 cut(s)	55
HapII	CCGG	3 cut(s)	5, 107, 157
HgaI	GACGC	1 cut(s)	449
Hin1I	GRCGYC	1 cut(s)	441
Hin1II	CATG	3 cut(s)	86, 225, 293
HinfI	GANTC	4 cut(s)	208, 266, 408, 417
HpaII	CCGG	3 cut(s)	5, 107, 157
HphI	GGTGA	2 cut(s)	312, 482
Hpy188III	TCNNGA	5 cut(s)	30, 59, 196, 212, 412
Hpy99I	CGWCG	1 cut(s)	449
HpyAV	CCTTC	1 cut(s)	386
HpyCH4III	ACNGT	1 cut(s)	175
HpyCH4IV	ACGT	1 cut(s)	190
HpyCH4V	TGCA	5 cut(s)	26, 77, 221, 272, 308
HpyF10VI	GCNNNNNNNGC	4 cut(s)	52, 61, 314, 369
HpySE526I	ACGT	1 cut(s)	190
Hsp92I	GRCGYC	1 cut(s)	441
Hsp92II	CATG	3 cut(s)	86, 225, 293
Kzo9I	GATC	3 cut(s)	32, 152, 325
LmnI	GCTCC	2 cut(s)	61, 291
LpnPI	CCDG	6 cut(s)	18, 120, 132, 170, 181, 197
Lsp1109I	GCAGC	1 cut(s)	352
LweI	GCATC	1 cut(s)	35
MaeI	CTAG	2 cut(s)	425, 437
MaeII	ACGT	1 cut(s)	190
MaeIII	GTNAC	1 cut(s)	100
MalI	GATC	3 cut(s)	34, 154, 327
MboI	GATC	3 cut(s)	32, 152, 325
MflI	RGATCY	1 cut(s)	152
MluCI	AATT	1 cut(s)	242
MlyI	GAGTC	1 cut(s)	417
MmeI	TCCRAC	1 cut(s)	333
MroXI	GAANNNNTTC	1 cut(s)	120
MspA1I	CMGCKG	1 cut(s)	343
MspI	CCGG	3 cut(s)	5, 107, 157
MspR9I	CCNGG	1 cut(s)	157
Mva1269I	GAATGC	1 cut(s)	46
MwoI	GCNNNNNNNGC	4 cut(s)	52, 61, 314, 369
NciI	CCSGG	1 cut(s)	157
NdeII	GATC	3 cut(s)	32, 152, 325
NlaIII	CATG	3 cut(s)	86, 225, 293
NlaIV	GGNNCC	2 cut(s)	63, 117
NspI	RCATGY	1 cut(s)	225
PceI	AGGCCT	1 cut(s)	55
PctI	GAATGC	1 cut(s)	46
PdmI	GAANNNNTTC	1 cut(s)	120
PfeI	GAWTC	3 cut(s)	208, 266, 417
PflFI	GACNNNGTC	1 cut(s)	443
PkrI	GCNGC	1 cut(s)	342
PleI	GAGTC	1 cut(s)	416
PpsI	GAGTC	1 cut(s)	416
PspN4I	GGNNCC	2 cut(s)	63, 117
PsuI	RGATCY	1 cut(s)	152
PsyI	GACNNNGTC	1 cut(s)	443
RsaI	GTAC	3 cut(s)	87, 127, 226
RsaNI	GTAC	3 cut(s)	86, 126, 225
SatI	GCNGC	1 cut(s)	341
Sau3AI	GATC	3 cut(s)	32, 152, 325
SchI	GAGTC	1 cut(s)	417
ScrFI	CCNGG	1 cut(s)	157
SfaNI	GCATC	1 cut(s)	35
Sse9I	AATT	1 cut(s)	242
SseBI	AGGCCT	1 cut(s)	55
SsiI	CCGC	4 cut(s)	343, 363, 450, 468
SspMI	CTAG	2 cut(s)	425, 437
StuI	AGGCCT	1 cut(s)	55
StyD4I	CCNGG	1 cut(s)	155
TaaI	ACNGT	1 cut(s)	175
TaiI	ACGT	1 cut(s)	193
TaqI	TCGA	1 cut(s)	130
TasI	AATT	1 cut(s)	242
TfiI	GAWTC	3 cut(s)	208, 266, 417
TseI	GCWGC	1 cut(s)	340
TspDTI	ATGAA	1 cut(s)	306
Tth111I	GACNNNGTC	1 cut(s)	443
XapI	RAATTY	1 cut(s)	242
XceI	RCATGY	1 cut(s)	225
XcmI	CCANNNNNNNNNTGG	1 cut(s)	296
XmnI	GAANNNNTTC	1 cut(s)	120
XspI	CTAG	2 cut(s)	425, 437

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.