Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007120.1

Orthogroup ID

OG0003502

Physical Location & Seq

Genomic Coordinates Forward (+)

24836 .. 32111

Gene Structure 7276 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007120.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

atgatggacgccatccatggagtcaaggatagggactacgccagccctaggctgatggtggacggaggcggtgccctaggcagcaacgatattcatggaaatgatgtaaagctaagtgagtacagtggcaaggttcttctgattgtgaatgttgcttcaaaatgtggtttaacacaatccaactacaaggaattgaatattttgtatgaaaagtacaaaaacaaaggttttgagatcttggcatttccttgcaaccagtttgcaggacaagagcctggaaacaatgaggagattcaggaagttgcatgcacgaggttgaaagctgaatttccaatatttgacaagatcgaggtgaatgggaagaatgaggctcccctttacaagttcttaaaactggagaaaggtggtctctttggaaatggcatcaaatggaactttaccaagtttttgcacctctcaaaattgagaaagacatccagaatctattggaatcttcttgagtatcaaggatggcagaaagggtttgctatagcaattgcagcaaataaaatgagtttgggagcatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0016020 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00480 ko00590 ko04918 map00480 map00590 map04918

Pfam Domains

Protein Families

GSHPx

Protein Analysis

188

Amino Acids

21.08

Weight (kDa)

8.99

Isoelectric Point (pI)

34.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003502)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G31570 AT2G43350 AT2G43350
fragaria_vesca	FvH4_6g25700
malus_domestica	MD04G1034400.v1.1 MD14G1027000.v1.1
prunus_persica	Prupe.1G186500_v2.0.a1 Prupe.1G186500_v2.0.a1
pyrus_communis	pycom14g02570
rosa_chinensis	RchiOBHm_Chr4g0400261 RchiOBHm_Chr4g0408201
rosa_laevigata	RLG00000008663 RLG00000015280
rosa_multiflora	Rmu_sc0001793.1_g000052 Rmu_sc0005466.1_g000001 Rmu_sc0007120.1_g000003
rosa_roxburghii	Rroxscaffold_1G00024180 Rroxscaffold_1G00051140 Rroxscaffold_4G00316840 Rroxscaffold_5G00352710 Rroxscaffold_5G00361080
rosa_rugosa	Rorug04G0084100 Rorug04G0184800
rosa_samantha	Rh1CG015500 Rh2AG152400 Rh2BG157900 Rh3BG160500 Rh4AG149100 Rh4BG145700 Rh4CG156100 Rh4DG142100 Rh5BG054800
rosa_wichuraiana	Rw1G001130 Rw3G028070 Rw4G012170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	71
AciI	CCGC	1 cut(s)	69
AcsI	RAATTY	1 cut(s)	326
AcyI	GRCGYC	1 cut(s)	9
AfaI	GTAC	2 cut(s)	122, 215
AfiI	CCNNNNNNNGG	1 cut(s)	48
AgsI	TTSAA	3 cut(s)	159, 196, 319
AjnI	CCWGG	1 cut(s)	274
AluBI	AGCT	2 cut(s)	112, 323
AluI	AGCT	2 cut(s)	112, 323
Alw26I	GTCTC	1 cut(s)	413
ApeKI	GCWGC	2 cut(s)	81, 539
ApoI	RAATTY	1 cut(s)	326
AspA2I	CCTAGG	2 cut(s)	47, 76
AsuHPI	GGTGA	1 cut(s)	364
AvrII	CCTAGG	2 cut(s)	47, 76
BaeGI	GKGCMC	1 cut(s)	76
BanI	GGYRCC	1 cut(s)	71
BauI	CACGAG	1 cut(s)	310
BbvI	GCAGC	2 cut(s)	93, 551
BccI	CCATC	3 cut(s)	20, 49, 504
BciT130I	CCWGG	1 cut(s)	276
BcoDI	GTCTC	1 cut(s)	413
BfaI	CTAG	2 cut(s)	48, 77
BfmI	CTRYAG	1 cut(s)	528
BglII	AGATCT	1 cut(s)	234
BisI	GCNGC	2 cut(s)	82, 540
BlnI	CCTAGG	2 cut(s)	47, 76
BlsI	GCNGC	2 cut(s)	83, 541
Bme1390I	CCNGG	1 cut(s)	276
BmiI	GGNNCC	2 cut(s)	73, 372
BmrFI	CCNGG	1 cut(s)	276
BmsI	GCATC	1 cut(s)	432
BpmI	CTGGAG	1 cut(s)	416
BpuEI	CTTGAG	1 cut(s)	518
BsaHI	GRCGYC	1 cut(s)	9
BsaI	GGTCTC	1 cut(s)	413
BsaJI	CCNNGG	3 cut(s)	16, 47, 76
Bsc4I	CCNNNNNNNGG	1 cut(s)	48
Bse1I	ACTGG	2 cut(s)	256, 399
BseBI	CCWGG	1 cut(s)	276
BseDI	CCNNGG	3 cut(s)	16, 47, 76
BseGI	GGATG	3 cut(s)	12, 473, 515
BseLI	CCNNNNNNNGG	1 cut(s)	48
BseNI	ACTGG	2 cut(s)	256, 399
BseRI	GAGGAG	1 cut(s)	302
BseSI	GKGCMC	1 cut(s)	76
BseXI	GCAGC	2 cut(s)	93, 551
BshNI	GGYRCC	1 cut(s)	71
BslFI	GGGAC	1 cut(s)	47
BslI	CCNNNNNNNGG	1 cut(s)	48
BsmAI	GTCTC	1 cut(s)	413
BsmFI	GGGAC	1 cut(s)	47
Bso31I	GGTCTC	1 cut(s)	413
Bsp1286I	GDGCHC	1 cut(s)	76
Bsp143I	GATC	2 cut(s)	234, 345
Bsp19I	CCATGG	1 cut(s)	16
BspACI	CCGC	1 cut(s)	69
BspLI	GGNNCC	2 cut(s)	73, 372
BspT107I	GGYRCC	1 cut(s)	71
BspTNI	GGTCTC	1 cut(s)	413
BsrI	ACTGG	2 cut(s)	256, 399
BssECI	CCNNGG	3 cut(s)	16, 47, 76
BssMI	GATC	2 cut(s)	234, 345
BssNI	GRCGYC	1 cut(s)	9
BssSI	CACGAG	1 cut(s)	310
BssT1I	CCWWGG	3 cut(s)	16, 47, 76
Bst2BI	CACGAG	1 cut(s)	310
Bst2UI	CCWGG	1 cut(s)	276
Bst4CI	ACNGT	1 cut(s)	125
BstACI	GRCGYC	1 cut(s)	9
BstC8I	GCNNGC	2 cut(s)	43, 307
BstDEI	CTNAG	1 cut(s)	113
BstDSI	CCRYGG	1 cut(s)	16
BstF5I	GGATG	3 cut(s)	12, 473, 515
BstKTI	GATC	2 cut(s)	237, 348
BstMAI	GTCTC	1 cut(s)	413
BstMBI	GATC	2 cut(s)	234, 345
BstMWI	GCNNNNNNNGC	1 cut(s)	539
BstNI	CCWGG	1 cut(s)	276
BstNSI	RCATGY	1 cut(s)	309
BstSCI	CCNGG	1 cut(s)	274
BstSFI	CTRYAG	1 cut(s)	528
BstSLI	GKGCMC	1 cut(s)	76
BstV1I	GCAGC	2 cut(s)	93, 551
BstX2I	RGATCY	1 cut(s)	234
BstYI	RGATCY	1 cut(s)	234
BtgI	CCRYGG	1 cut(s)	16
BtsCI	GGATG	3 cut(s)	12, 473, 515
BtsIMutI	CAGTG	1 cut(s)	130
Cac8I	GCNNGC	2 cut(s)	43, 307
CseI	GACGC	1 cut(s)	17
Csp6I	GTAC	2 cut(s)	121, 214
CviAII	CATG	4 cut(s)	17, 95, 306, 564
CviJI	RGCY	6 cut(s)	45, 52, 112, 274, 323, 371
CviKI_1	RGCY	6 cut(s)	45, 52, 112, 274, 323, 371
CviQI	GTAC	2 cut(s)	121, 214
DdeI	CTNAG	1 cut(s)	113
DpnI	GATC	2 cut(s)	236, 347
DpnII	GATC	2 cut(s)	234, 345
Eco130I	CCWWGG	3 cut(s)	16, 47, 76
Eco31I	GGTCTC	1 cut(s)	413
EcoRII	CCWGG	1 cut(s)	274
EcoT14I	CCWWGG	3 cut(s)	16, 47, 76
ErhI	CCWWGG	3 cut(s)	16, 47, 76
FaeI	CATG	4 cut(s)	20, 98, 309, 567
FaiI	YATR	6 cut(s)	18, 96, 207, 307, 530, 565
FaqI	GGGAC	1 cut(s)	47
FatI	CATG	4 cut(s)	16, 94, 305, 563
Fnu4HI	GCNGC	2 cut(s)	82, 540
FokI	GGATG	2 cut(s)	460, 522
Fsp4HI	GCNGC	2 cut(s)	82, 540
FspBI	CTAG	2 cut(s)	48, 77
GluI	GCNGC	2 cut(s)	82, 540
GsuI	CTGGAG	1 cut(s)	416
HgaI	GACGC	1 cut(s)	17
Hin1I	GRCGYC	1 cut(s)	9
Hin1II	CATG	4 cut(s)	20, 98, 309, 567
HinfI	GANTC	4 cut(s)	21, 292, 480, 490
HphI	GGTGA	1 cut(s)	364
Hpy166II	GTNNAC	1 cut(s)	61
Hpy188I	TCNGA	1 cut(s)	141
Hpy188III	TCNNGA	3 cut(s)	296, 477, 497
Hpy8I	GTNNAC	1 cut(s)	61
HpyCH4III	ACNGT	1 cut(s)	125
HpyCH4V	TGCA	6 cut(s)	252, 263, 305, 309, 451, 539
HpyF10VI	GCNNNNNNNGC	1 cut(s)	539
HpyF3I	CTNAG	1 cut(s)	113
Hsp92I	GRCGYC	1 cut(s)	9
Hsp92II	CATG	4 cut(s)	20, 98, 309, 567
Kzo9I	GATC	2 cut(s)	234, 345
LmnI	GCTCC	2 cut(s)	376, 560
LpnPI	CCDG	8 cut(s)	55, 249, 261, 269, 281, 288, 380, 490
Lsp1109I	GCAGC	2 cut(s)	93, 551
LweI	GCATC	1 cut(s)	432
MaeI	CTAG	2 cut(s)	48, 77
MalI	GATC	2 cut(s)	236, 347
MboI	GATC	2 cut(s)	234, 345
MboII	GAAGA	3 cut(s)	128, 373, 485
MfeI	CAATTG	1 cut(s)	534
MflI	RGATCY	1 cut(s)	234
MhlI	GDGCHC	1 cut(s)	76
MluCI	AATT	4 cut(s)	191, 326, 461, 534
MlyI	GAGTC	1 cut(s)	30
MmeI	TCCRAC	1 cut(s)	204
MnlI	CCTC	6 cut(s)	59, 280, 306, 343, 361, 464
MseI	TTAA	2 cut(s)	170, 389
MslI	CAYNNNNRTG	1 cut(s)	99
MspR9I	CCNGG	1 cut(s)	276
MunI	CAATTG	1 cut(s)	534
MvaI	CCWGG	1 cut(s)	276
MwoI	GCNNNNNNNGC	1 cut(s)	539
NcoI	CCATGG	1 cut(s)	16
NdeII	GATC	2 cut(s)	234, 345
NlaIII	CATG	4 cut(s)	20, 98, 309, 567
NlaIV	GGNNCC	2 cut(s)	73, 372
NspI	RCATGY	1 cut(s)	309
PaeI	GCATGC	1 cut(s)	309
PfeI	GAWTC	3 cut(s)	292, 480, 490
PkrI	GCNGC	2 cut(s)	83, 541
PleI	GAGTC	1 cut(s)	29
PpsI	GAGTC	1 cut(s)	29
Psp6I	CCWGG	1 cut(s)	274
PspGI	CCWGG	1 cut(s)	274
PspN4I	GGNNCC	2 cut(s)	73, 372
PsuI	RGATCY	1 cut(s)	234
RsaI	GTAC	2 cut(s)	122, 215
RsaNI	GTAC	2 cut(s)	121, 214
RseI	CAYNNNNRTG	1 cut(s)	99
SaqAI	TTAA	2 cut(s)	170, 389
SatI	GCNGC	2 cut(s)	82, 540
Sau3AI	GATC	2 cut(s)	234, 345
SchI	GAGTC	1 cut(s)	30
ScrFI	CCNGG	1 cut(s)	276
SduI	GDGCHC	1 cut(s)	76
SetI	ASST	8 cut(s)	114, 135, 229, 317, 325, 354, 406, 456
SfaNI	GCATC	1 cut(s)	432
SfcI	CTRYAG	1 cut(s)	528
SmiMI	CAYNNNNRTG	1 cut(s)	99
SmlI	CTYRAG	1 cut(s)	497
SmoI	CTYRAG	1 cut(s)	497
SphI	GCATGC	1 cut(s)	309
Sse9I	AATT	4 cut(s)	191, 326, 461, 534
SsiI	CCGC	1 cut(s)	69
SspI	AATATT	2 cut(s)	199, 336
SspMI	CTAG	2 cut(s)	48, 77
StyD4I	CCNGG	1 cut(s)	274
StyI	CCWWGG	3 cut(s)	16, 47, 76
TaaI	ACNGT	1 cut(s)	125
TaqI	TCGA	1 cut(s)	348
TasI	AATT	4 cut(s)	191, 326, 461, 534
TatI	WGTACW	2 cut(s)	120, 213
TfiI	GAWTC	3 cut(s)	292, 480, 490
Tru1I	TTAA	2 cut(s)	170, 389
Tru9I	TTAA	2 cut(s)	170, 389
TscAI	CASTG	1 cut(s)	130
TseI	GCWGC	2 cut(s)	81, 539
TspDTI	ATGAA	2 cut(s)	83, 222
TspGWI	ACGGA	1 cut(s)	78
TspRI	CASTG	1 cut(s)	130
XapI	RAATTY	1 cut(s)	326
XceI	RCATGY	1 cut(s)	309
XmaJI	CCTAGG	2 cut(s)	47, 76
XspI	CTAG	2 cut(s)	48, 77

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.